RchiOBHm_Chr6g0272591

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014147
Physical Location & Seq
Forward (+)
32970461 .. 32971937
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24455

Sequence Viewer

Length: 795 bp
ATGTGGCATGTCAGAGCAGAGCTAGCCCCGGCAGTCCTCCTAGTTGTAGATTTTGGTGGGTGGTACAGGCTTGAATCCAAGTTGTCAAATGACAATTCATCAGACGTGATTCAGCAGACACAAGTTTCAATACTCAAAGATGTAATTGTGCCATACACCCATCTACTTCCTAGATTGCAATTATCAGAAAACAAGAAGCGTCAGACTCTACTTTATTTCAAAGGAGCTAAACATAGGCACCGGGGAGGCTTAATTCGAGAAAAATTGTGGGATTTGTTGGTTAATGTGCCCAATGTTGTAATGGAGGAAGGCTTCCCTAATGCCACTGGGAGGGAGCAATCGATAAAAGGGATGAGAACATCAGAGTTTTGCTTGCACCCAGCTGGGGACACTCCCACGTCATGCCGGCTTTTTGATGCCATTCAAAGTCTTTGTATACCTGTGATTGTCAGCGACAACATAGAGCTTCCTTTTGAAGGAATGATTGATTATTCAGAATTTTCAGTTTTTGTTGCAGTTAGTGATGCATTGAGACCAAACTGGCTTATGGGTCATCTTAAGAGCTTTTCAAAAGCGGAGAGGGATAGATTTCGTCAGAAAATGGCTCAGCTACAGCCTGTGTTTCAGTATGACAATGGCCATCCTGGAGCCATTGGGCCAGTTTCTCCTGATGGCGCAGTGAACCACATCTGGAGAAAGGTTTACCAAAAGCTGCCAATGATTAAGGAAGCAATCCTTCGTGAAAGGAGAAAACCTACTGGTGTATCAGTTCCACGCCGTTGTCATTGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

264

Amino Acids

30.09

Weight (kDa)

9.32

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 32 - 182 7.9e-44 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34270
fragaria_vesca FvH4_2g12430
malus_domestica MD05G1038500.v1.1 MD10G1044300.v1.1
prunus_persica Prupe.8G050800_v2.0.a1
pyrus_communis pycom05g03140 pycom10g03090
rosa_chinensis RchiOBHm_Chr6g0272591
rosa_laevigata RLG00000013663
rosa_multiflora Rmu_sc0003080.1_g000005
rosa_roxburghii Rroxscaffold_7G00196090
rosa_rugosa Rorug06G0070100
rosa_samantha Rh6AG186500 Rh6BG189800 Rh6CG187600 Rh6DG179500
rosa_wichuraiana Rw6G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 436
AciI CCGC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 1 cut(s) 497
AfaI GTAC 2 cut(s) 65, 790
AfiI CCNNNNNNNGG 3 cut(s) 330, 385, 476
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 6 cut(s) 74, 129, 220, 425, 476, 570
AjiI CACGTC 2 cut(s) 106, 399
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 7 cut(s) 22, 227, 383, 466, 564, 610, 712
AluI AGCT 7 cut(s) 22, 227, 383, 466, 564, 610, 712
Alw26I GTCTC 1 cut(s) 526
AoxI GGCC 2 cut(s) 637, 656
ApeKI GCWGC 1 cut(s) 712
ApoI RAATTY 1 cut(s) 497
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 1 cut(s) 656
AsuC2I CCSGG 2 cut(s) 29, 242
AsuNHI GCTAGC 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 291
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 699
BccI CCATC 3 cut(s) 168, 648, 665
BceAI ACGGC 1 cut(s) 762
BciT130I CCWGG 1 cut(s) 645
BcnI CCSGG 2 cut(s) 29, 242
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 3 cut(s) 23, 41, 171
BfmI CTRYAG 1 cut(s) 611
BfrI CTTAAG 1 cut(s) 557
BisI GCNGC 1 cut(s) 713
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 1 cut(s) 714
Bme1390I CCNGG 3 cut(s) 29, 242, 645
BmgBI CACGTC 2 cut(s) 106, 399
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 2 cut(s) 239, 649
BmrFI CCNGG 3 cut(s) 29, 242, 645
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 406, 514
BmtI GCTAGC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 336
BpmI CTGGAG 2 cut(s) 666, 712
Bpu1102I GCTNAGC 1 cut(s) 606
BpuMI CCSGG 2 cut(s) 29, 242
Bsa29I ATCGAT 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 2 cut(s) 27, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 330, 385, 476
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 4 cut(s) 331, 545, 659, 763
BseBI CCWGG 1 cut(s) 645
BseCI ATCGAT 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 27, 241
BseGI GGATG 2 cut(s) 357, 640
BseLI CCNNNNNNNGG 3 cut(s) 330, 385, 476
BseMII CTCAG 1 cut(s) 620
BseNI ACTGG 4 cut(s) 331, 545, 659, 763
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 699
BseYI CCCAGC 2 cut(s) 379, 383
BshFI GGCC 2 cut(s) 639, 658
BshNI GGYRCC 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 341
BsiSI CCGG 3 cut(s) 29, 241, 406
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 3 cut(s) 330, 385, 476
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 2 cut(s) 639, 658
Bso31I GGTCTC 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 788
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 1 cut(s) 575
BspANI GGCC 2 cut(s) 639, 658
BspCNI CTCAG 1 cut(s) 619
BspDI ATCGAT 1 cut(s) 341
BspLI GGNNCC 2 cut(s) 239, 649
BspOI GCTAGC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 237
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 405
BsrGI TGTACA 1 cut(s) 788
BsrI ACTGG 4 cut(s) 331, 545, 659, 763
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 27, 241
BssNAI GTATAC 1 cut(s) 437
Bst1107I GTATAC 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 645
BstAFI CTTAAG 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 788
BstC8I GCNNGC 3 cut(s) 24, 374, 407
BstDEI CTNAG 1 cut(s) 606
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 2 cut(s) 357, 640
BstHHI GCGC 1 cut(s) 677
BstMAI GTCTC 1 cut(s) 526
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 3 cut(s) 27, 240, 643
BstSFI CTRYAG 1 cut(s) 611
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 699
BstZ17I GTATAC 1 cut(s) 437
Bsu15I ATCGAT 1 cut(s) 341
BsuRI GGCC 2 cut(s) 639, 658
BsuTUI ATCGAT 1 cut(s) 341
BtrI CACGTC 2 cut(s) 106, 399
BtsCI GGATG 2 cut(s) 357, 640
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 324, 684
Cac8I GCNNGC 3 cut(s) 24, 374, 407
CfoI GCGC 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 656
ClaI ATCGAT 1 cut(s) 341
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 64, 789
CviAII CATG 3 cut(s) 8, 402, 792
CviQI GTAC 2 cut(s) 64, 789
DdeI CTNAG 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 637
Eco31I GGTCTC 1 cut(s) 526
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 529
FaeI CATG 3 cut(s) 11, 405, 795
FaiI YATR 9 cut(s) 9, 154, 234, 403, 437, 461, 548, 630, 793
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FaqI GGGAC 1 cut(s) 401
FatI CATG 3 cut(s) 7, 401, 791
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 713
FokI GGATG 2 cut(s) 364, 627
Fsp4HI GCNGC 1 cut(s) 713
FspBI CTAG 3 cut(s) 23, 41, 171
GlaI GCGC 1 cut(s) 676
GluI GCNGC 1 cut(s) 713
GsaI CCCAGC 2 cut(s) 383, 387
GsuI CTGGAG 2 cut(s) 666, 712
HaeIII GGCC 2 cut(s) 639, 658
HapII CCGG 3 cut(s) 29, 241, 406
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 677
Hin1II CATG 3 cut(s) 11, 405, 795
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HinfI GANTC 3 cut(s) 74, 109, 205
HpaII CCGG 3 cut(s) 29, 241, 406
Hpy166II GTNNAC 3 cut(s) 437, 682, 703
Hpy188I TCNGA 7 cut(s) 14, 103, 187, 204, 364, 496, 597
Hpy188III TCNNGA 4 cut(s) 257, 668, 691, 740
Hpy8I GTNNAC 3 cut(s) 437, 682, 703
HpyAV CCTTC 3 cut(s) 302, 470, 746
HpyCH4IV ACGT 2 cut(s) 105, 398
HpyCH4V TGCA 4 cut(s) 178, 376, 515, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 606
HpySE526I ACGT 2 cut(s) 105, 398
Hsp92II CATG 3 cut(s) 11, 405, 795
HspAI GCGC 1 cut(s) 675
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
LmnI GCTCC 3 cut(s) 224, 334, 647
Lsp1109I GCAGC 1 cut(s) 699
LweI GCATC 2 cut(s) 406, 514
MaeI CTAG 3 cut(s) 23, 41, 171
MaeII ACGT 2 cut(s) 105, 398
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 6 cut(s) 94, 144, 179, 252, 263, 497
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 5 cut(s) 47, 239, 298, 324, 573
Mox20I TGGCCA 1 cut(s) 639
Mph1103I ATGCAT 1 cut(s) 529
MroNI GCCGGC 1 cut(s) 405
MscI TGGCCA 1 cut(s) 639
MseI TTAA 4 cut(s) 251, 282, 558, 723
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 383
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 3 cut(s) 29, 241, 406
MspR9I CCNGG 3 cut(s) 29, 242, 645
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 23
NaeI GCCGGC 1 cut(s) 407
NciI CCSGG 2 cut(s) 29, 242
NgoMIV GCCGGC 1 cut(s) 405
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 3 cut(s) 11, 405, 795
NlaIV GGNNCC 2 cut(s) 239, 649
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 11
PdiI GCCGGC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 74, 109
PfoI TCCNGGA 1 cut(s) 643
PkrI GCNGC 1 cut(s) 714
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 643
PspFI CCCAGC 2 cut(s) 379, 383
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 2 cut(s) 239, 649
PspPI GGNCC 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 2 cut(s) 65, 790
RsaNI GTAC 2 cut(s) 64, 789
SaqAI TTAA 4 cut(s) 251, 282, 558, 723
SatI GCNGC 1 cut(s) 713
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 3 cut(s) 29, 242, 645
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 2 cut(s) 406, 514
SfcI CTRYAG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 6 cut(s) 94, 144, 179, 252, 263, 497
SsiI CCGC 1 cut(s) 575
SspMI CTAG 3 cut(s) 23, 41, 171
StyD4I CCNGG 3 cut(s) 27, 240, 643
TaiI ACGT 2 cut(s) 108, 401
TaqI TCGA 2 cut(s) 256, 341
TasI AATT 6 cut(s) 94, 144, 179, 252, 263, 497
TatI WGTACW 1 cut(s) 788
TfiI GAWTC 2 cut(s) 74, 109
Tru1I TTAA 4 cut(s) 251, 282, 558, 723
Tru9I TTAA 4 cut(s) 251, 282, 558, 723
TscAI CASTG 2 cut(s) 331, 684
TseI GCWGC 1 cut(s) 712
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 2 cut(s) 331, 684
Vha464I CTTAAG 1 cut(s) 557
XagI CCTNNNNNAGG 1 cut(s) 474
XapI RAATTY 1 cut(s) 497
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 436
XspI CTAG 3 cut(s) 23, 41, 171
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.