AT1G35210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014023
Physical Location & Seq
Reverse (-)
12896582 .. 12897675
1094 bp
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UTR
Exon/CDS
Intron
AT1G35210.1

Sequence Viewer

Length: 471 bp
ATGGCGAGCTTAAGCACGAGCTTGCTCGGAATAAGACGAGGGTCAAGTAACAAGAACAAGGCAGAAGATAAGACCAAAAACGCAGTGTTTTGCAAGAAGCATCCAAAGCATAGACAATCACCTGGTGTTTGTTCTCTTTGTCTTAACGAGAGGCTCTCTCTTTTTATCAAAGCAGCTTCTTCACGTAGACCAAGATCTCGTCAAATCTTGTCTACTTCTTCCTCAACTACTTCCTCTCTTTCATCTGACGGTTCTTCTTCTGTCTCTTCTTGTCCTTCTCCTATTGTTGATCGCCGACGATACTTGTTAATGTCCGGAGGCAGCGGTAGAGGAGAGAAAGTGATTTCGTGGATGACGAAAAGCCGATCCGTAGCTTATAAAGTGGATGATGAGAAAAGAAGGAAGAAGAAGACAAAGACGAATAGTGGTTTCTTTTTTGGTTTGGTAATGGGCACAAAGAAGAGACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

156

Amino Acids

17.2

Weight (kDa)

11.06

Isoelectric Point (pI)

73.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22470 AT1G35210 AT1G72240
fragaria_vesca FvH4_5g36590
prunus_persica Prupe.1G522800_v2.0.a1
pyrus_communis pycom08g16170 pycom15g33530
rosa_chinensis RchiOBHm_Chr7g0242321
rosa_laevigata RLG00000000899
rosa_multiflora Rmu_sc0000429.1_g000043
rosa_roxburghii Rroxscaffold_3G00222770
rosa_rugosa Rorug07G0314800
rosa_samantha Rh7AG470400 Rh7BG440400 Rh7CG487000 Rh7DG455400
rosa_wichuraiana Rw0G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AccI GTMKAC 2 cut(s) 187, 212
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 1 cut(s) 324
AclWI GGATC 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 125
AflII CTTAAG 1 cut(s) 10
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 4 cut(s) 9, 21, 176, 374
AluI AGCT 4 cut(s) 9, 21, 176, 374
Alw26I GTCTC 2 cut(s) 268, 457
AlwI GGATC 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 173, 321
AsuHPI GGTGA 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 455
BauI CACGAG 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 185, 333
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 268, 457
BfrI CTTAAG 1 cut(s) 10
BglII AGATCT 1 cut(s) 194
BisI GCNGC 2 cut(s) 174, 322
BlsI GCNGC 2 cut(s) 175, 323
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 109
BoxI GACNNNNGTC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 416
BplI GAGNNNNNCTC 4 cut(s) 140, 172, 142, 174
BsaAI YACGTR 1 cut(s) 185
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
BseAI TCCGGA 1 cut(s) 314
BseBI CCWGG 1 cut(s) 123
BseGI GGATG 3 cut(s) 100, 357, 391
BseRI GAGGAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 2 cut(s) 185, 333
BsiSI CCGG 1 cut(s) 315
BsmAI GTCTC 2 cut(s) 268, 457
Bsp1286I GDGCHC 1 cut(s) 455
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 3 cut(s) 194, 289, 365
BspACI CCGC 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 314
BspPI GGATC 1 cut(s) 360
BspTI CTTAAG 1 cut(s) 10
BssMI GATC 3 cut(s) 194, 289, 365
BssSI CACGAG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 271, 455
BstAFI CTTAAG 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 7, 23
BstF5I GGATG 3 cut(s) 100, 357, 391
BstKTI GATC 3 cut(s) 197, 292, 368
BstMAI GTCTC 2 cut(s) 268, 457
BstMBI GATC 3 cut(s) 194, 289, 365
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 123
BstPAI GACNNNNGTC 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 185, 333
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BtsCI GGATG 3 cut(s) 100, 357, 391
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 7, 23
CsiI ACCWGGT 1 cut(s) 121
CviJI RGCY 6 cut(s) 9, 21, 154, 176, 363, 374
CviKI_1 RGCY 6 cut(s) 9, 21, 154, 176, 363, 374
DpnI GATC 3 cut(s) 196, 291, 367
DpnII GATC 3 cut(s) 194, 289, 365
DraIII CACNNNGTG 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 271, 455
EarI CTCTTC 2 cut(s) 271, 455
EcoRII CCWGG 1 cut(s) 121
FaiI YATR 2 cut(s) 111, 378
FblI GTMKAC 2 cut(s) 187, 212
Fnu4HI GCNGC 2 cut(s) 174, 322
FokI GGATG 3 cut(s) 87, 364, 398
Fsp4HI GCNGC 2 cut(s) 174, 322
GluI GCNGC 2 cut(s) 174, 322
HapII CCGG 1 cut(s) 315
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 2 cut(s) 188, 213
Hpy188I TCNGA 2 cut(s) 29, 247
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 2 cut(s) 188, 213
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 285, 393
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpySE526I ACGT 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 314
Kzo9I GATC 3 cut(s) 194, 289, 365
LpnPI CCDG 3 cut(s) 108, 135, 328
Lsp1109I GCAGC 2 cut(s) 185, 333
LweI GCATC 1 cut(s) 109
MabI ACCWGGT 1 cut(s) 121
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 196, 291, 367
MboI GATC 3 cut(s) 194, 289, 365
MboII GAAGA 9 cut(s) 77, 171, 210, 246, 249, 258, 415, 418, 421
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 455
MnlI CCTC 6 cut(s) 32, 144, 232, 244, 311, 323
MroI TCCGGA 1 cut(s) 314
MseI TTAA 3 cut(s) 11, 144, 308
MspA1I CMGCKG 1 cut(s) 324
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 3 cut(s) 194, 289, 365
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PkrI GCNGC 2 cut(s) 175, 323
Ppu21I YACGTR 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 40
PsiI TTATAA 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 194
SaqAI TTAA 3 cut(s) 11, 144, 308
SatI GCNGC 2 cut(s) 174, 322
Sau3AI GATC 3 cut(s) 194, 289, 365
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 455
SetI ASST 6 cut(s) 11, 23, 124, 178, 187, 376
SexAI ACCWGGT 1 cut(s) 121
SfaNI GCATC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SsiI CCGC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 187
Tru1I TTAA 3 cut(s) 11, 144, 308
Tru9I TTAA 3 cut(s) 11, 144, 308
TscAI CASTG 1 cut(s) 90
TseI GCWGC 2 cut(s) 173, 321
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 1 cut(s) 90
Vha464I CTTAAG 1 cut(s) 10
XmiI GTMKAC 2 cut(s) 187, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.