FvH4_5g36590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014023
Physical Location & Seq
Forward (+)
26830610 .. 26831805
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36590.t1

Sequence Viewer

Length: 543 bp
ATGGAGAAGCTCAGAATCCGATCGAAGAAAACCCGACCTGACGGTGTCTGCAAGAAGCACCCGAAACACGAGCAGTCGCCGGGAGTTTGCTCCGTCTGCTTGAAAGAAAAACTCACTAAGCTCTCAAACAGCTCACGTAGAATCTCTCCAACAATGGGGTCGGGCACTCCTTCTACGACGTCTTCGATATCCTCGTACTATTCCTCTACAGATTCTTCTTCATGCTCGTCTCCTCCGGCGGAGCAGCAGGCACGTAATAATTATCGGTTTGCTGATCATGAAAAGGAGAAGGGTAGCTCGGTTGCGAATTGGTTGCTGGGGGAAGGTGGGGATCAGAGTACATATGTGCTTAAGAAGAGTAGGTCTCTGGCGAATTACTTTCCGAGAAGACAGAGAAGTACTAAGGAGACTGTGGAAGAGAAGAAGGGTCGTCGGTTTTGGGCAAGGTTGCTTCGTCCGATAAGTAAGAGGAAGGAAGATACAGCAACTTTGGTGCATTCTAGGACTGTTAGAGAGGTCAGGGTGCCTAATAGGGTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

181

Amino Acids

20.39

Weight (kDa)

10.34

Isoelectric Point (pI)

67.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF740 PF05340 9 - 79 3.8e-06 Protein of unknown function (DUF740)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22470 AT1G35210 AT1G72240
fragaria_vesca FvH4_5g36590
prunus_persica Prupe.1G522800_v2.0.a1
pyrus_communis pycom08g16170 pycom15g33530
rosa_chinensis RchiOBHm_Chr7g0242321
rosa_laevigata RLG00000000899
rosa_multiflora Rmu_sc0000429.1_g000043
rosa_roxburghii Rroxscaffold_3G00222770
rosa_rugosa Rorug07G0314800
rosa_samantha Rh7AG470400 Rh7BG440400 Rh7CG487000 Rh7DG455400
rosa_wichuraiana Rw0G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 523
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 3 cut(s) 197, 340, 400
AfiI CCNNNNNNNGG 1 cut(s) 155
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 4 cut(s) 10, 121, 132, 297
AluI AGCT 4 cut(s) 10, 121, 132, 297
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 3 cut(s) 234, 369, 401
AlwI GGATC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 523
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 174, 394
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 234, 369, 401
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 207
BfrI CTTAAG 1 cut(s) 350
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 81
BpiI GAAGAC 2 cut(s) 174, 394
BplI GAGNNNNNCTC 2 cut(s) 349, 381
BpuMI CCSGG 1 cut(s) 81
BsaAI YACGTR 2 cut(s) 137, 254
BsaHI GRCGYC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 523
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 2 cut(s) 80, 236
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 3 cut(s) 234, 369, 401
BsmBI CGTCTC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 496
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 167, 540
Bsp143I GATC 3 cut(s) 20, 274, 331
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 525
BspPI GGATC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 523
BspTI CTTAAG 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 369
BssMI GATC 3 cut(s) 20, 274, 331
BssNI GRCGYC 1 cut(s) 179
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
Bst4CI ACNGT 3 cut(s) 44, 412, 508
Bst6I CTCTTC 2 cut(s) 350, 411
BstACI GRCGYC 1 cut(s) 179
BstAFI CTTAAG 1 cut(s) 350
BstBAI YACGTR 2 cut(s) 137, 254
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 11, 117, 402
BstKTI GATC 3 cut(s) 23, 277, 334
BstMAI GTCTC 3 cut(s) 234, 369, 401
BstMBI GATC 3 cut(s) 20, 274, 331
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 174, 394
Cac8I GCNNGC 1 cut(s) 249
CciI TCATGA 1 cut(s) 277
Csp6I GTAC 3 cut(s) 196, 339, 399
CviAII CATG 2 cut(s) 222, 278
CviJI RGCY 4 cut(s) 10, 121, 132, 297
CviKI_1 RGCY 4 cut(s) 10, 121, 132, 297
CviQI GTAC 3 cut(s) 196, 339, 399
DdeI CTNAG 3 cut(s) 11, 117, 402
DpnI GATC 3 cut(s) 22, 276, 333
DpnII GATC 3 cut(s) 20, 274, 331
Eam1104I CTCTTC 2 cut(s) 350, 411
EarI CTCTTC 2 cut(s) 350, 411
EciI GGCGGA 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 189
EcoRV GATATC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 2 cut(s) 225, 281
FaiI YATR 4 cut(s) 223, 279, 343, 345
FatI CATG 2 cut(s) 221, 277
FauNDI CATATG 1 cut(s) 343
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 1 cut(s) 501
GluI GCNGC 1 cut(s) 245
GsaI CCCAGC 1 cut(s) 320
HapII CCGG 2 cut(s) 80, 236
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 2 cut(s) 225, 281
HinfI GANTC 3 cut(s) 15, 141, 212
HpaII CCGG 2 cut(s) 80, 236
Hpy188I TCNGA 6 cut(s) 14, 20, 336, 384, 459, 542
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 2 cut(s) 181, 435
HpyAV CCTTC 5 cut(s) 180, 283, 317, 418, 466
HpyCH4III ACNGT 3 cut(s) 44, 412, 508
HpyCH4IV ACGT 3 cut(s) 136, 179, 253
HpyCH4V TGCA 2 cut(s) 51, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 3 cut(s) 11, 117, 402
HpySE526I ACGT 3 cut(s) 136, 179, 253
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 2 cut(s) 225, 281
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 20, 274, 331
LmnI GCTCC 2 cut(s) 95, 241
LpnPI CCDG 7 cut(s) 51, 93, 233, 249, 302, 353, 505
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 1 cut(s) 501
MaeII ACGT 3 cut(s) 136, 179, 253
MalI GATC 3 cut(s) 22, 276, 333
MboI GATC 3 cut(s) 20, 274, 331
MboII GAAGA 9 cut(s) 37, 174, 207, 210, 367, 399, 428, 433, 488
MhlI GDGCHC 2 cut(s) 167, 540
MluCI AATT 3 cut(s) 259, 307, 373
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 5 cut(s) 202, 214, 243, 462, 508
MseI TTAA 1 cut(s) 351
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 2 cut(s) 80, 236
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 496
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 343
NdeII GATC 3 cut(s) 20, 274, 331
NlaIII CATG 2 cut(s) 225, 281
NlaIV GGNNCC 1 cut(s) 525
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 2 cut(s) 182, 191
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 3 cut(s) 15, 141, 212
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 246
Ple19I CGATCG 1 cut(s) 23
Ppu21I YACGTR 2 cut(s) 137, 254
PspFI CCCAGC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 525
PsyI GACNNNGTC 1 cut(s) 44
PvuI CGATCG 1 cut(s) 23
RsaI GTAC 3 cut(s) 197, 340, 400
RsaNI GTAC 3 cut(s) 196, 339, 399
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 3 cut(s) 20, 274, 331
ScaI AGTACT 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 167, 540
SfcI CTRYAG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 3 cut(s) 259, 307, 373
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 3 cut(s) 44, 412, 508
TaiI ACGT 3 cut(s) 139, 182, 256
TaqI TCGA 2 cut(s) 23, 185
TasI AATT 3 cut(s) 259, 307, 373
TatI WGTACW 2 cut(s) 338, 398
TfiI GAWTC 3 cut(s) 15, 141, 212
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 210, 294
TspGWI ACGGA 1 cut(s) 82
Tth111I GACNNNGTC 1 cut(s) 44
Vha464I CTTAAG 1 cut(s) 350
XspI CTAG 1 cut(s) 501
ZraI GACGTC 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.