Prupe.1G522800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014023
Physical Location & Seq
Reverse (-)
42830935 .. 42831562
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G522800.1

Sequence Viewer

Length: 504 bp
ATGGAAAAGCTGAGGAGATCATCCAACAAAAGAAAGCCCGATATTGCCCGGTGCAAGAAGCACCCAAAGCACCAACAATCGCCCGGCGTTTGCAGCTTGTGCTTGAGACAAAAGCTAGAACGGCTTGCTCAAAAGCTGTCAACTTATTCTGGCTCGCCACTTCTACTACGTAGAACCTTGTCTACCACCTCTCCTTCGACGACGTCGTCTTTATCGTCGTATTACTCATCCTCTTCGGGTTCTTCTTTGTCGTCTCCGGCACCGGGATATGAGCAAAAGGGCCCCATTTCTTGGTTTCTGAGTGGTGAAAATAATGTGCTCACTAAAAGTAGGTCGCTGGTTAATTATTTTCCAAGGAGAATGAGAGGGAAAGAGGGCAGCGAGGAGAAGAAGAAAAGTAGGTTTTGGTCGAAGTTGCTTCGTCCCAGAAGTAAGCGGAGGGAAGAGAGTTTGGTGCATTCTAGGACTGTGAGAGAGATCAGGGTGCCTAATCGGGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

11.13

Isoelectric Point (pI)

79.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22470 AT1G35210 AT1G72240
fragaria_vesca FvH4_5g36590
prunus_persica Prupe.1G522800_v2.0.a1
pyrus_communis pycom08g16170 pycom15g33530
rosa_chinensis RchiOBHm_Chr7g0242321
rosa_laevigata RLG00000000899
rosa_multiflora Rmu_sc0000429.1_g000043
rosa_roxburghii Rroxscaffold_3G00222770
rosa_rugosa Rorug07G0314800
rosa_samantha Rh7AG470400 Rh7BG440400 Rh7CG487000 Rh7DG455400
rosa_wichuraiana Rw0G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 205
AatII GACGTC 1 cut(s) 206
AccB1I GGYRCC 2 cut(s) 259, 484
AccB7I CCANNNNNTGG 1 cut(s) 291
AccI GTMKAC 1 cut(s) 182
AciI CCGC 1 cut(s) 436
AcyI GRCGYC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 263, 291
AluBI AGCT 4 cut(s) 10, 96, 115, 136
AluI AGCT 4 cut(s) 10, 96, 115, 136
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 100, 258
AoxI GGCC 1 cut(s) 280
ApaI GGGCCC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 93, 378
AspS9I GGNCC 2 cut(s) 280, 281
AsuC2I CCSGG 3 cut(s) 49, 84, 264
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 284
BanI GGYRCC 2 cut(s) 259, 484
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 105, 390
BceAI ACGGC 1 cut(s) 137
BcnI CCSGG 3 cut(s) 49, 84, 264
BcoDI GTCTC 2 cut(s) 100, 258
BfaI CTAG 2 cut(s) 116, 462
BisI GCNGC 2 cut(s) 94, 379
BlsI GCNGC 2 cut(s) 95, 380
Bme1390I CCNGG 3 cut(s) 49, 84, 264
BmgT120I GGNCC 2 cut(s) 280, 281
BmiI GGNNCC 4 cut(s) 261, 282, 283, 486
BmrFI CCNGG 3 cut(s) 49, 84, 264
Bpu10I CCTNAGC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 124
BpuMI CCSGG 3 cut(s) 49, 84, 264
BsaAI YACGTR 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 291
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 20, 227
BseLI CCNNNNNNNGG 2 cut(s) 263, 291
BseMII CTCAG 1 cut(s) 290
BseRI GAGGAG 2 cut(s) 28, 398
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 2 cut(s) 105, 390
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 259, 484
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 4 cut(s) 49, 84, 257, 263
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 263, 291
BsmAI GTCTC 2 cut(s) 100, 258
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 408
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 1 cut(s) 282
Bsp120I GGGCCC 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 284, 321
Bsp143I GATC 2 cut(s) 17, 477
BspACI CCGC 1 cut(s) 436
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 291
BspLI GGNNCC 4 cut(s) 261, 282, 283, 486
BspT107I GGYRCC 2 cut(s) 259, 484
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 17, 477
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 238, 438
BstACI GRCGYC 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 126, 155
BstDEI CTNAG 2 cut(s) 11, 299
BstF5I GGATG 2 cut(s) 20, 227
BstKTI GATC 2 cut(s) 20, 480
BstMAI GTCTC 2 cut(s) 100, 258
BstMBI GATC 2 cut(s) 17, 477
BstMWI GCNNNNNNNGC 4 cut(s) 67, 93, 99, 121
BstSCI CCNGG 3 cut(s) 47, 82, 262
BstSLI GKGCMC 1 cut(s) 284
BstSNI TACGTA 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 105, 390
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 2 cut(s) 20, 227
Cac8I GCNNGC 2 cut(s) 126, 155
Cfr13I GGNCC 2 cut(s) 280, 281
CviJI RGCY 8 cut(s) 10, 37, 96, 115, 124, 136, 153, 282
CviKI_1 RGCY 8 cut(s) 10, 37, 96, 115, 124, 136, 153, 282
DdeI CTNAG 2 cut(s) 11, 299
DpnI GATC 2 cut(s) 19, 479
DpnII GATC 2 cut(s) 17, 477
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 238, 438
EarI CTCTTC 2 cut(s) 238, 438
Eco105I TACGTA 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 284
EcoO109I RGGNCCY 2 cut(s) 280, 281
EcoT14I CCWWGG 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 353
Esp3I CGTCTC 1 cut(s) 258
FaiI YATR 1 cut(s) 270
FaqI GGGAC 1 cut(s) 408
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 94, 379
FokI GGATG 2 cut(s) 7, 214
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 94, 379
FspBI CTAG 2 cut(s) 116, 462
GluI GCNGC 2 cut(s) 94, 379
HaeIII GGCC 1 cut(s) 282
HapII CCGG 4 cut(s) 49, 84, 257, 263
Hin1I GRCGYC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HpaII CCGG 4 cut(s) 49, 84, 257, 263
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 141, 183
Hpy188I TCNGA 1 cut(s) 300
Hpy8I GTNNAC 2 cut(s) 141, 183
Hpy99I CGWCG 4 cut(s) 202, 205, 208, 220
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 2 cut(s) 169, 203
HpyCH4V TGCA 3 cut(s) 54, 93, 457
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 93, 99, 121
HpyF3I CTNAG 2 cut(s) 11, 299
HpySE526I ACGT 2 cut(s) 169, 203
Hsp92I GRCGYC 1 cut(s) 203
Kzo9I GATC 2 cut(s) 17, 477
LpnPI CCDG 8 cut(s) 62, 97, 135, 270, 276, 323, 439, 466
Lsp1109I GCAGC 2 cut(s) 105, 390
MaeI CTAG 2 cut(s) 116, 462
MaeII ACGT 2 cut(s) 169, 203
MalI GATC 2 cut(s) 19, 479
MboI GATC 2 cut(s) 17, 477
MboII GAAGA 5 cut(s) 225, 234, 400, 403, 455
MhlI GDGCHC 2 cut(s) 284, 321
MluCI AATT 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 7 cut(s) 6, 199, 241, 359, 367, 376, 432
MseI TTAA 1 cut(s) 342
MspI CCGG 4 cut(s) 49, 84, 257, 263
MspR9I CCNGG 3 cut(s) 49, 84, 264
Mva1269I GAATGC 1 cut(s) 457
MwoI GCNNNNNNNGC 4 cut(s) 67, 93, 99, 121
NciI CCSGG 3 cut(s) 49, 84, 264
NdeII GATC 2 cut(s) 17, 477
NlaIV GGNNCC 4 cut(s) 261, 282, 283, 486
PcsI WCGNNNNNNNCGW 2 cut(s) 203, 212
PctI GAATGC 1 cut(s) 457
PflFI GACNNNGTC 2 cut(s) 202, 205
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 2 cut(s) 95, 380
Ppu21I YACGTR 1 cut(s) 170
PspN4I GGNNCC 4 cut(s) 261, 282, 283, 486
PspOMI GGGCCC 1 cut(s) 280
PspPI GGNCC 2 cut(s) 280, 281
PsrI GAACNNNNNNTAC 2 cut(s) 166, 198
PsyI GACNNNGTC 2 cut(s) 202, 205
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 94, 379
Sau3AI GATC 2 cut(s) 17, 477
Sau96I GGNCC 2 cut(s) 280, 281
ScrFI CCNGG 3 cut(s) 49, 84, 264
SduI GDGCHC 2 cut(s) 284, 321
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SnaBI TACGTA 1 cut(s) 170
Sse9I AATT 1 cut(s) 343
SsiI CCGC 1 cut(s) 436
SspMI CTAG 2 cut(s) 116, 462
StyD4I CCNGG 3 cut(s) 47, 82, 262
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 2 cut(s) 172, 206
TaqI TCGA 2 cut(s) 197, 410
TasI AATT 1 cut(s) 343
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 2 cut(s) 93, 378
Tth111I GACNNNGTC 2 cut(s) 202, 205
Van91I CCANNNNNTGG 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 182
XspI CTAG 2 cut(s) 116, 462
ZraI GACGTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.