RLG00000000899

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014023
Physical Location & Seq
Reverse (-)
7732601 .. 7733146
546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000899

Sequence Viewer

Length: 546 bp
ATGGAAAATCTCAGAATCCGATCGAAGAAAATCCGACCCGACAGTGGTGTGTGCAAGAAGCACCCGAAACACCAGCAACCACCGGGCGTTTGCTCCATTTGTTTGAAAGAGAAACTTACGAAGCTCTCAAACAGTTCCGGCAGCTCACGTAGAACCTCTAAAAAAATGGGGTCGGCCACTCCTTCTACGACGTCTTCGTTATCGTCGTACTATTCTTCTACAGACACTTCATCTTGCTCGTCTCCTCCGGCGGAGGCACGTAATTTCCGGTTTGCTGATCCTGAAAGGGAGAAGGGTAGTTCGGTTGCGAACTGGTTGCTGGGCGAAGGTGGGGAGAGTGATTATGTGCTTAAGAAGAGCAGGTCTCTGGCGAATAATTACTTTCCGAGAAGACAGAGAAGTACTAAAGAGACTGGGGAAGAGAAGAAGAGTCGTCGGTTTTGGTCAAGGTTGCTTCGTCCGATAAGTAAGAGGAAGGAAGATACGGCAACTTTGGTGCATTCTAGGACTGTTAGAGAGGTCAGGGTTCCTAATAGGGTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

182

Amino Acids

20.42

Weight (kDa)

10.48

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22470 AT1G35210 AT1G72240
fragaria_vesca FvH4_5g36590
prunus_persica Prupe.1G522800_v2.0.a1
pyrus_communis pycom08g16170 pycom15g33530
rosa_chinensis RchiOBHm_Chr7g0242321
rosa_laevigata RLG00000000899
rosa_multiflora Rmu_sc0000429.1_g000043
rosa_roxburghii Rroxscaffold_3G00222770
rosa_rugosa Rorug07G0314800
rosa_samantha Rh7AG470400 Rh7BG440400 Rh7CG487000 Rh7DG455400
rosa_wichuraiana Rw0G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 351
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 191
AfaI GTAC 2 cut(s) 209, 403
AfiI CCNNNNNNNGG 1 cut(s) 44
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 2 cut(s) 124, 144
AluI AGCT 2 cut(s) 124, 144
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 3 cut(s) 246, 369, 404
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 186, 397
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 501
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 3 cut(s) 246, 369, 404
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 351
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 2 cut(s) 186, 397
BplI GAGNNNNNCTC 2 cut(s) 349, 381
BpuMI CCSGG 1 cut(s) 84
BsaAI YACGTR 2 cut(s) 149, 260
BsaHI GRCGYC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 317, 418
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 317, 418
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 153
BseYI CCCAGC 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 4 cut(s) 83, 138, 248, 268
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 3 cut(s) 246, 369, 404
BsmBI CGTCTC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 2 cut(s) 20, 277
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 350
BspTI CTTAAG 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 317, 418
BssMI GATC 2 cut(s) 20, 277
BssNI GRCGYC 1 cut(s) 191
Bst4CI ACNGT 3 cut(s) 44, 134, 511
Bst6I CTCTTC 3 cut(s) 350, 414, 422
BstACI GRCGYC 1 cut(s) 191
BstAFI CTTAAG 1 cut(s) 350
BstBAI YACGTR 2 cut(s) 149, 260
BstDEI CTNAG 1 cut(s) 11
BstKTI GATC 2 cut(s) 23, 280
BstMAI GTCTC 3 cut(s) 246, 369, 404
BstMBI GATC 2 cut(s) 20, 277
BstMCI CGRYCG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 153
BstV2I GAAGAC 2 cut(s) 186, 397
BsuRI GGCC 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 351
Csp6I GTAC 2 cut(s) 208, 402
CviJI RGCY 3 cut(s) 124, 144, 176
CviKI_1 RGCY 3 cut(s) 124, 144, 176
CviQI GTAC 2 cut(s) 208, 402
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 22, 279
DpnII GATC 2 cut(s) 20, 277
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 3 cut(s) 350, 414, 422
EarI CTCTTC 3 cut(s) 350, 414, 422
EciI GGCGGA 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 246
FaiI YATR 1 cut(s) 345
FalI AAGNNNNNCTT 2 cut(s) 99, 131
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 504
GluI GCNGC 1 cut(s) 142
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 176
HapII CCGG 4 cut(s) 83, 138, 248, 268
Hin1I GRCGYC 1 cut(s) 191
HinfI GANTC 2 cut(s) 15, 430
HpaII CCGG 4 cut(s) 83, 138, 248, 268
Hpy188I TCNGA 6 cut(s) 14, 20, 35, 387, 462, 545
Hpy188III TCNNGA 1 cut(s) 281
Hpy99I CGWCG 3 cut(s) 193, 208, 438
HpyAV CCTTC 4 cut(s) 192, 286, 320, 469
HpyCH4III ACNGT 3 cut(s) 44, 134, 511
HpyCH4IV ACGT 3 cut(s) 148, 191, 259
HpyCH4V TGCA 2 cut(s) 54, 499
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 3 cut(s) 148, 191, 259
Hsp92I GRCGYC 1 cut(s) 191
Kzo9I GATC 2 cut(s) 20, 277
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 1 cut(s) 504
MaeII ACGT 3 cut(s) 148, 191, 259
MalI GATC 2 cut(s) 22, 279
MboI GATC 2 cut(s) 20, 277
MboII GAAGA 9 cut(s) 37, 186, 207, 367, 402, 431, 436, 439, 491
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 2 cut(s) 262, 376
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 5 cut(s) 166, 247, 255, 465, 511
MseI TTAA 1 cut(s) 351
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 4 cut(s) 83, 138, 248, 268
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 499
NciI CCSGG 1 cut(s) 84
NdeII GATC 2 cut(s) 20, 277
NlaIV GGNNCC 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 2 cut(s) 194, 203
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 143
Ple19I CGATCG 1 cut(s) 23
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
Ppu21I YACGTR 2 cut(s) 149, 260
PspFI CCCAGC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 528
PvuI CGATCG 1 cut(s) 23
RsaI GTAC 2 cut(s) 209, 403
RsaNI GTAC 2 cut(s) 208, 402
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 2 cut(s) 20, 277
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 543
SfcI CTRYAG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 2 cut(s) 262, 376
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 3 cut(s) 44, 134, 511
TaiI ACGT 3 cut(s) 151, 194, 262
TaqI TCGA 1 cut(s) 23
TasI AATT 2 cut(s) 262, 376
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 1 cut(s) 49
Vha464I CTTAAG 1 cut(s) 350
XspI CTAG 1 cut(s) 504
ZraI GACGTC 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.