Rw0G009500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00371
OG0014023
Physical Location & Seq
Forward (+)
139977 .. 140827
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009500.1

Sequence Viewer

Length: 543 bp
ATGGAAAATCTCAGAATCCGATCGAAGAAAATCCGACCCGACAGTGGTGTGTGCAAGAAGCACCCGAAACACCAGCAACCACCGGGCGTTTGCTCCATTTGTTTGAAAGAGAAACTTACGAAGCTCTCAAACAGTTCCGGCAGCTCACGTAGAACCTCTAAAACAATGGGGTCGGCCACTCCTTCCACGACGTCTTCGTTATCGTCGTACTATTCTTCTACAGACGCTTCATCTTGCTCGTCTCCTCCGGCGGAGGCACGTAATTTCCGGTTTCCTGATCATGAAAGGGAGAAGGGTAGTTCGGTTGCGAATTGGTTGCTGGGCGAAGGTGGGGAGAGTGATTATGTGCTTAAGAAGAGCAGGTCGCTGGCCAATTACTTTCCGAGAAGACAGAGAAGTACTAAAGAGACTGGGGAAGAGAAGAAGAGTCGTCGGTTTTGGTCAAGGTTACTTCGTCCGATAAGTAAGAGGAAGGAAGATACGGCAACTTTGGTGCATTCTAGGACTGTTAGAGAGGTCAGGGTGCCTAATAGGGTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

180

Amino Acids

20.32

Weight (kDa)

10.46

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF740 PF05340 14 - 103 4.8e-06 Protein of unknown function (DUF740)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22470 AT1G35210 AT1G72240
fragaria_vesca FvH4_5g36590
prunus_persica Prupe.1G522800_v2.0.a1
pyrus_communis pycom08g16170 pycom15g33530
rosa_chinensis RchiOBHm_Chr7g0242321
rosa_laevigata RLG00000000899
rosa_multiflora Rmu_sc0000429.1_g000043
rosa_roxburghii Rroxscaffold_3G00222770
rosa_rugosa Rorug07G0314800
rosa_samantha Rh7AG470400 Rh7BG440400 Rh7CG487000 Rh7DG455400
rosa_wichuraiana Rw0G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 523
AciI CCGC 1 cut(s) 251
AcoI YGGCCR 2 cut(s) 174, 369
AcyI GRCGYC 1 cut(s) 191
AfaI GTAC 2 cut(s) 209, 400
AfiI CCNNNNNNNGG 1 cut(s) 44
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 2 cut(s) 124, 144
AluI AGCT 2 cut(s) 124, 144
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 2 cut(s) 246, 401
AoxI GGCC 2 cut(s) 174, 369
ApeKI GCWGC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 84
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 1 cut(s) 523
BbsI GAAGAC 2 cut(s) 186, 394
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 498
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 2 cut(s) 246, 401
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 351
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 2 cut(s) 186, 394
BpuMI CCSGG 1 cut(s) 84
BsaAI YACGTR 2 cut(s) 149, 260
BsaHI GRCGYC 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 153
BseYI CCCAGC 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 176, 371
BshNI GGYRCC 1 cut(s) 523
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 4 cut(s) 83, 138, 248, 268
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 246, 401
BsmBI CGTCTC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 2 cut(s) 176, 371
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 2 cut(s) 20, 277
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 176, 371
BspCNI CTCAG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 525
BspMI ACCTGC 1 cut(s) 351
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 523
BspTI CTTAAG 1 cut(s) 350
BsrI ACTGG 1 cut(s) 415
BssMI GATC 2 cut(s) 20, 277
BssNI GRCGYC 1 cut(s) 191
Bst4CI ACNGT 3 cut(s) 44, 134, 508
Bst6I CTCTTC 3 cut(s) 350, 411, 419
BstACI GRCGYC 1 cut(s) 191
BstAFI CTTAAG 1 cut(s) 350
BstBAI YACGTR 2 cut(s) 149, 260
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 11
BstKTI GATC 2 cut(s) 23, 280
BstMAI GTCTC 2 cut(s) 246, 401
BstMBI GATC 2 cut(s) 20, 277
BstMCI CGRYCG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 153
BstV2I GAAGAC 2 cut(s) 186, 394
BsuRI GGCC 2 cut(s) 176, 371
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 369
CciI TCATGA 1 cut(s) 280
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 208, 399
CviAII CATG 1 cut(s) 281
CviJI RGCY 4 cut(s) 124, 144, 176, 371
CviKI_1 RGCY 4 cut(s) 124, 144, 176, 371
CviQI GTAC 2 cut(s) 208, 399
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 22, 279
DpnII GATC 2 cut(s) 20, 277
EaeI YGGCCR 2 cut(s) 174, 369
Eam1104I CTCTTC 3 cut(s) 350, 411, 419
EarI CTCTTC 3 cut(s) 350, 411, 419
EciI GGCGGA 1 cut(s) 266
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 1 cut(s) 284
FaiI YATR 2 cut(s) 282, 345
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 501
GluI GCNGC 1 cut(s) 142
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 2 cut(s) 176, 371
HapII CCGG 4 cut(s) 83, 138, 248, 268
HgaI GACGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 1 cut(s) 284
HinfI GANTC 2 cut(s) 15, 427
HpaII CCGG 4 cut(s) 83, 138, 248, 268
Hpy188I TCNGA 6 cut(s) 14, 20, 35, 384, 459, 542
Hpy188III TCNNGA 2 cut(s) 275, 281
Hpy99I CGWCG 3 cut(s) 193, 208, 435
HpyAV CCTTC 4 cut(s) 192, 286, 320, 466
HpyCH4III ACNGT 3 cut(s) 44, 134, 508
HpyCH4IV ACGT 3 cut(s) 148, 191, 259
HpyCH4V TGCA 2 cut(s) 54, 496
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 3 cut(s) 148, 191, 259
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 1 cut(s) 284
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 20, 277
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 1 cut(s) 501
MaeII ACGT 3 cut(s) 148, 191, 259
MaeIII GTNAC 1 cut(s) 447
MalI GATC 2 cut(s) 22, 279
MboI GATC 2 cut(s) 20, 277
MboII GAAGA 9 cut(s) 37, 186, 207, 367, 399, 428, 433, 436, 488
MhlI GDGCHC 1 cut(s) 540
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 3 cut(s) 262, 310, 373
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 5 cut(s) 166, 247, 255, 462, 508
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 4 cut(s) 83, 138, 248, 268
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 496
NciI CCSGG 1 cut(s) 84
NdeII GATC 2 cut(s) 20, 277
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 525
PagI TCATGA 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 2 cut(s) 194, 203
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 143
Ple19I CGATCG 1 cut(s) 23
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
Ppu21I YACGTR 2 cut(s) 149, 260
PspFI CCCAGC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 525
PvuI CGATCG 1 cut(s) 23
RsaI GTAC 2 cut(s) 209, 400
RsaNI GTAC 2 cut(s) 208, 399
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 2 cut(s) 20, 277
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 3 cut(s) 262, 310, 373
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 3 cut(s) 44, 134, 508
TaiI ACGT 3 cut(s) 151, 194, 262
TaqI TCGA 1 cut(s) 23
TasI AATT 3 cut(s) 262, 310, 373
TatI WGTACW 1 cut(s) 398
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 141
TspDTI ATGAA 2 cut(s) 219, 297
TspRI CASTG 1 cut(s) 49
Vha464I CTTAAG 1 cut(s) 350
XspI CTAG 1 cut(s) 501
ZraI GACGTC 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.