AT1G35820
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020199
Physical Location & Seq
Reverse (-)
13308119 .. 13309257
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35820.1

Sequence Viewer

Length: 864 bp
ATGAATAATTATACTCTCAAGAATCCTACTGCTATCGGTAGAGAGTATATGCTCTTACGCACAAAAACAGGCATCACGGTTGATCCTGATACATCTTTCATAAATGCATCTGACGCATGGTGGACTGAACAAGAGTTTGGATGCAAATTAACAAAAAGCTTGAACCGAAAACCGCCTGTATTTTGGGACGTGATGCAACGATGTCTCGTAGTACATGATGTTCAATCACAATCTCAACATTCTGCTCGTCAAAGAAGAGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGATAGTGACAGTGGTAACATGCCACAAACCGAGGTTCCTGAAACGCAAGAAGAAGAAGAAGTGTATCGTGTTACCATTGATGATGATGAAATATTCCAAAATTCTGCTGCTAGAAGGCAACAACGAGGTAGGCCAAATTTTTGGTCAACCGCTAGACGTGGAAGTAGTGCACAAAGATCTGGAGGAAGCTCACGAGTTTCTATTGGAAGTGGTTCACGAGGAAGTCAGAGACGACAATCCTTTGAAACAACAATACAAGACATCATCACTGGCTTCAGAGAATTCCAACGACAAAGTTTTCAACAACTTCGTCCTGCTGCAAGCACTGACGAGGATAAGGTACAACTGTTAGAAGCTATGACTGGTGTTTCACGCAACAACCAAGATGTGCTAAAACAGTTGGGTTCAGACCATTCATTTGGGAGTCCACATTTAGGAGGTATATCATCTAGAAGTCCATCCTCCGTTGGTAATAATTTGGGAGGGCAAAATTCACCCGGTTTTTGGGGTCCCAATTATCCACAGTGGGGAACACCACCAAACGTTGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 vWA-TerF-like

Protein Analysis

287

Amino Acids

32.2

Weight (kDa)

5.74

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35820 AT1G43720 AT3G30520 AT3G32904 AT3G42870 AT5G36080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 173, 459
AclI AACGTT 1 cut(s) 852
AclWI GGATC 2 cut(s) 77, 262
AcsI RAATTY 4 cut(s) 409, 445, 590, 799
AcuI CTGAAG 1 cut(s) 568
AfaI GTAC 2 cut(s) 213, 651
AfiI CCNNNNNNNGG 3 cut(s) 743, 813, 836
AgsI TTSAA 4 cut(s) 163, 224, 554, 611
AjiI CACGTC 2 cut(s) 190, 467
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AloI GAACNNNNNNTCC 2 cut(s) 252, 284
AluBI AGCT 3 cut(s) 159, 498, 665
AluI AGCT 3 cut(s) 159, 498, 665
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 2 cut(s) 209, 532
Alw44I GTGCAC 1 cut(s) 477
AlwI GGATC 2 cut(s) 77, 262
AoxI GGCC 1 cut(s) 440
ApaLI GTGCAC 1 cut(s) 477
ApeKI GCWGC 2 cut(s) 416, 626
ApoI RAATTY 4 cut(s) 409, 445, 590, 799
ArsI GACNNNNNNTTYG 4 cut(s) 437, 469, 710, 742
Asp700I GAANNNNTTC 1 cut(s) 520
AspS9I GGNCC 1 cut(s) 818
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 2 cut(s) 308, 795
AvaII GGWCC 1 cut(s) 818
BaeGI GKGCMC 1 cut(s) 481
BaeI ACNNNNGTAYC 2 cut(s) 641, 674
BauI CACGAG 3 cut(s) 272, 501, 525
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 403, 613
BccI CCATC 1 cut(s) 775
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 2 cut(s) 209, 532
BfaI CTAG 3 cut(s) 420, 462, 759
BglII AGATCT 1 cut(s) 485
BisI GCNGC 2 cut(s) 417, 627
BlsI GCNGC 2 cut(s) 418, 628
Bme1390I CCNGG 1 cut(s) 807
Bme18I GGWCC 1 cut(s) 818
BmgBI CACGTC 2 cut(s) 190, 467
BmgT120I GGNCC 1 cut(s) 818
BmiI GGNNCC 3 cut(s) 345, 819, 820
BmrFI CCNGG 1 cut(s) 807
BmsI GCATC 4 cut(s) 81, 116, 131, 183
BpmI CTGGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 807
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 743, 813, 836
Bse1I ACTGG 2 cut(s) 583, 676
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 146, 767
BseLI CCNNNNNNNGG 3 cut(s) 743, 813, 836
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 583, 676
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 2 cut(s) 403, 613
BshFI GGCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 1 cut(s) 807
BslFI GGGAC 2 cut(s) 200, 804
BslI CCNNNNNNNGG 3 cut(s) 743, 813, 836
BsmAI GTCTC 2 cut(s) 209, 532
BsmBI CGTCTC 1 cut(s) 532
BsmFI GGGAC 2 cut(s) 200, 804
BsnI GGCC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 3 cut(s) 82, 267, 485
BspACI CCGC 2 cut(s) 173, 459
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 320
BspLI GGNNCC 3 cut(s) 345, 819, 820
BspPI GGATC 2 cut(s) 77, 262
BsrI ACTGG 2 cut(s) 583, 676
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 82, 267, 485
BssSI CACGAG 3 cut(s) 272, 501, 525
Bst2BI CACGAG 3 cut(s) 272, 501, 525
Bst4CI ACNGT 6 cut(s) 79, 320, 657, 708, 834, 861
Bst6I CTCTTC 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 1 cut(s) 307
BstF5I GGATG 2 cut(s) 146, 767
BstKTI GATC 3 cut(s) 85, 270, 488
BstMAI GTCTC 2 cut(s) 209, 532
BstMBI GATC 3 cut(s) 82, 267, 485
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 805
BstSLI GKGCMC 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 403, 613
BstX2I RGATCY 1 cut(s) 485
BstXI CCANNNNNNTGG 3 cut(s) 278, 450, 728
BstYI RGATCY 1 cut(s) 485
BsuRI GGCC 1 cut(s) 442
BtrI CACGTC 2 cut(s) 190, 467
BtsCI GGATG 2 cut(s) 146, 767
BtsIMutI CAGTG 4 cut(s) 325, 576, 633, 839
Cac8I GCNNGC 1 cut(s) 631
Cfr13I GGNCC 1 cut(s) 818
CseI GACGC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 212, 650
CviAII CATG 4 cut(s) 117, 215, 278, 328
CviJI RGCY 5 cut(s) 159, 442, 498, 582, 665
CviKI_1 RGCY 5 cut(s) 159, 442, 498, 582, 665
CviQI GTAC 2 cut(s) 212, 650
DdeI CTNAG 1 cut(s) 307
DpnI GATC 3 cut(s) 84, 269, 487
DpnII GATC 3 cut(s) 82, 267, 485
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 590
EcoT22I ATGCAT 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 4 cut(s) 120, 218, 281, 331
FaqI GGGAC 2 cut(s) 200, 804
FatI CATG 4 cut(s) 116, 214, 277, 327
Fnu4HI GCNGC 2 cut(s) 417, 627
FokI GGATG 2 cut(s) 153, 754
Fsp4HI GCNGC 2 cut(s) 417, 627
FspBI CTAG 3 cut(s) 420, 462, 759
GluI GCNGC 2 cut(s) 417, 627
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 807
HgaI GACGC 1 cut(s) 122
Hin1II CATG 4 cut(s) 120, 218, 281, 331
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 2 cut(s) 22, 733
HpaII CCGG 1 cut(s) 807
HphI GGTGA 2 cut(s) 308, 795
Hpy166II GTNNAC 5 cut(s) 123, 456, 479, 524, 737
Hpy188I TCNGA 5 cut(s) 112, 310, 537, 587, 718
Hpy188III TCNNGA 7 cut(s) 19, 86, 347, 489, 501, 525, 759
Hpy8I GTNNAC 5 cut(s) 123, 456, 479, 524, 737
HpyAV CCTTC 2 cut(s) 287, 417
HpyCH4III ACNGT 6 cut(s) 79, 320, 657, 708, 834, 861
HpyCH4IV ACGT 3 cut(s) 189, 466, 852
HpyCH4V TGCA 6 cut(s) 107, 144, 196, 479, 629, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 307
HpySE526I ACGT 3 cut(s) 189, 466, 852
Hsp92II CATG 4 cut(s) 120, 218, 281, 331
KflI GGGWCCC 1 cut(s) 818
Kzo9I GATC 3 cut(s) 82, 267, 485
LpnPI CCDG 9 cut(s) 54, 99, 189, 360, 474, 564, 636, 657, 820
Lsp1109I GCAGC 2 cut(s) 403, 613
LweI GCATC 4 cut(s) 81, 116, 131, 183
MaeI CTAG 3 cut(s) 420, 462, 759
MaeII ACGT 3 cut(s) 189, 466, 852
MaeIII GTNAC 3 cut(s) 314, 323, 379
MalI GATC 3 cut(s) 84, 269, 487
MboI GATC 3 cut(s) 82, 267, 485
MboII GAAGA 6 cut(s) 267, 302, 311, 371, 374, 377
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 9 cut(s) 7, 146, 263, 409, 445, 590, 784, 799, 823
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 8 cut(s) 334, 428, 485, 521, 634, 740, 781, 785
Mph1103I ATGCAT 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 520
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 1 cut(s) 807
MspR9I CCNGG 1 cut(s) 807
MunI CAATTG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 807
NdeII GATC 3 cut(s) 82, 267, 485
NlaIII CATG 4 cut(s) 120, 218, 281, 331
NlaIV GGNNCC 3 cut(s) 345, 819, 820
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 418, 628
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
PpuMI RGGWCCY 1 cut(s) 818
Psp1406I AACGTT 1 cut(s) 852
Psp5II RGGWCCY 1 cut(s) 818
PspN4I GGNNCC 3 cut(s) 345, 819, 820
PspPI GGNCC 1 cut(s) 818
PspPPI RGGWCCY 1 cut(s) 818
PsrI GAACNNNNNNTAC 2 cut(s) 204, 236
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 2 cut(s) 213, 651
RsaNI GTAC 2 cut(s) 212, 650
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 2 cut(s) 417, 627
Sau3AI GATC 3 cut(s) 82, 267, 485
Sau96I GGNCC 1 cut(s) 818
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 4 cut(s) 81, 116, 131, 183
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 9 cut(s) 7, 146, 263, 409, 445, 590, 784, 799, 823
SsiI CCGC 2 cut(s) 173, 459
SspI AATATT 1 cut(s) 402
SspMI CTAG 3 cut(s) 420, 462, 759
StyD4I CCNGG 1 cut(s) 805
TaaI ACNGT 6 cut(s) 79, 320, 657, 708, 834, 861
TaiI ACGT 3 cut(s) 192, 469, 855
TasI AATT 9 cut(s) 7, 146, 263, 409, 445, 590, 784, 799, 823
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 4 cut(s) 325, 583, 640, 839
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 416, 626
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 5 cut(s) 17, 88, 303, 411, 714
TspGWI ACGGA 1 cut(s) 763
TspRI CASTG 4 cut(s) 325, 583, 640, 839
VneI GTGCAC 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 818
XapI RAATTY 4 cut(s) 409, 445, 590, 799
XbaI TCTAGA 1 cut(s) 758
XceI RCATGY 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 3 cut(s) 420, 462, 759
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.