AT3G30520
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020199
Physical Location & Seq
Forward (+)
12130340 .. 12132173
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G30520.1

Sequence Viewer

Length: 1194 bp
ATGGAGTCCAATCGTCGACGGAACACAAACCCTTCCAGAGGAACAGTTTCAACTCATCCCACTGAAATTTTAACTCCTCCTACAGAAACAACAATACGGCTTGATGAATTCAGAAAAAGTTACAAGAAGTGGAAAGCTCTTACGCACAAAACAGGCATCACGGTTGATCCTGATACATCTTTCATAAATGCATCTGATGCATGGTGGACAGAACAAGAGTTTGGATGCAAATTAACAAAAAACTTGAACCGAAAACCGCCTGTATTTTGGGACGTGATGCAACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTTTGCTTGTCAAAGAAGAGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGATAGTGACAGTGGTAACATGCCACAAACCGAGGTTCCTGAAACGCAAGAAGAAGAAGAAGTGTATCGTGTTACCATTGATGATGATGAAATATTCCAAAATTCTGCTGCTAGAAGGCAACAACGAGGTAGGCCAAATTTTCAGTCAACCGCTAGACGTGGAAGTAGTGCACAAAGATCTGGAGGAACCTCACGAGTTTCTATTGGAAGTGGTTCAGGAGGAAGTCGGAGACGACAATCCTTTGAAACAACAATACAAGACAGCATCACTAGCTTCGGAGAATTCCAACGACAAAGTTTTCAACAACTTCGTCCTCGTGCTTTTGACCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTACCGCCCTAGATCTTCCCAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCCTAAGTATTTCATTGATATAGCTGCAAGCCCTGACAAGGATAAGTGGAGAACACCACCAAACGTTGCACAGTGGGGAACACCACCAAACGTTGCACAGTGCAGAACACCACCAAATGCTCCACATTGGGGAACACCACCAAATGCACACGGAACGACTCCAACAAATGTTCAATATGGATTTTCAGTTGGATGTCAAGAAGATGGTGCAACAACTGAAACTCCACCAATCATTCAACAAACATCATCATCTGGTCTCGGTTTCACAAATTATTTTGAAACTGGACAAATGCCACAAACACCTAGACCGCAAGGATCCAATGCAAGTCATCACAGTGATGTAGGAGATGAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 vWA-TerF-like

Protein Analysis

397

Amino Acids

44.99

Weight (kDa)

5.87

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35820 AT1G43720 AT3G30520 AT3G32904 AT3G42870 AT5G36080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 16
AciI CCGC 5 cut(s) 257, 543, 749, 765, 1145
AclI AACGTT 2 cut(s) 900, 927
AclWI GGATC 4 cut(s) 161, 346, 1146, 1159
AcsI RAATTY 6 cut(s) 66, 107, 493, 529, 674, 737
AfiI CCNNNNNNNGG 3 cut(s) 38, 874, 965
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 8 cut(s) 51, 247, 308, 638, 695, 1010, 1073, 1115
AjiI CACGTC 2 cut(s) 274, 551
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AloI GAACNNNNNNTCC 2 cut(s) 336, 368
AluBI AGCT 4 cut(s) 137, 666, 826, 860
AluI AGCT 4 cut(s) 137, 666, 826, 860
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 3 cut(s) 293, 616, 1097
Alw44I GTGCAC 1 cut(s) 561
AlwI GGATC 4 cut(s) 161, 346, 1146, 1159
AoxI GGCC 2 cut(s) 524, 836
ApaLI GTGCAC 1 cut(s) 561
ApeKI GCWGC 2 cut(s) 500, 860
ApoI RAATTY 6 cut(s) 66, 107, 493, 529, 674, 737
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AseI ATTAAT 1 cut(s) 810
Asp700I GAANNNNTTC 2 cut(s) 46, 604
AsuHPI GGTGA 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 565
BamHI GGATCC 1 cut(s) 1151
BauI CACGAG 3 cut(s) 356, 585, 708
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 2 cut(s) 487, 847
BccI CCATC 1 cut(s) 1034
BceAI ACGGC 1 cut(s) 113
BcoDI GTCTC 3 cut(s) 293, 616, 1097
BfaI CTAG 7 cut(s) 504, 546, 663, 770, 789, 827, 1140
BfmI CTRYAG 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 818
BglII AGATCT 2 cut(s) 569, 772
BisI GCNGC 2 cut(s) 501, 861
BlsI GCNGC 2 cut(s) 502, 862
BmgBI CACGTC 2 cut(s) 274, 551
BmiI GGNNCC 3 cut(s) 429, 580, 1153
BmsI GCATC 6 cut(s) 165, 187, 200, 215, 267, 666
BpmI CTGGAG 1 cut(s) 594
BsaI GGTCTC 1 cut(s) 1097
BsaJI CCNNGG 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 874, 965
Bse1I ACTGG 1 cut(s) 1123
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 3 cut(s) 55, 230, 1034
BseLI CCNNNNNNNGG 3 cut(s) 38, 874, 965
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 1123
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 2 cut(s) 487, 847
BsgI GTGCAG 1 cut(s) 958
BshFI GGCC 2 cut(s) 526, 838
BsiHKAI GWGCWC 1 cut(s) 565
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 38, 874, 965
BsmAI GTCTC 3 cut(s) 293, 616, 1097
BsmBI CGTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 526, 838
Bso31I GGTCTC 1 cut(s) 1097
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 5 cut(s) 166, 351, 569, 772, 1151
BspACI CCGC 5 cut(s) 257, 543, 749, 765, 1145
BspANI GGCC 2 cut(s) 526, 838
BspCNI CTCAG 1 cut(s) 404
BspLI GGNNCC 3 cut(s) 429, 580, 1153
BspPI GGATC 4 cut(s) 161, 346, 1146, 1159
BspTI CTTAAG 1 cut(s) 818
BspTNI GGTCTC 1 cut(s) 1097
BsrI ACTGG 1 cut(s) 1123
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 5 cut(s) 166, 351, 569, 772, 1151
BssSI CACGAG 3 cut(s) 356, 585, 708
Bst2BI CACGAG 3 cut(s) 356, 585, 708
Bst4CI ACNGT 6 cut(s) 46, 163, 404, 909, 936, 1172
Bst6I CTCTTC 1 cut(s) 334
BstAFI CTTAAG 1 cut(s) 818
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 805, 865
BstDEI CTNAG 2 cut(s) 391, 840
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 55, 230, 1034
BstKTI GATC 5 cut(s) 169, 354, 572, 775, 1154
BstMAI GTCTC 3 cut(s) 293, 616, 1097
BstMBI GATC 5 cut(s) 166, 351, 569, 772, 1151
BstMWI GCNNNNNNNGC 2 cut(s) 197, 663
BstNSI RCATGY 2 cut(s) 415, 807
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 2 cut(s) 487, 847
BstX2I RGATCY 3 cut(s) 569, 772, 1151
BstXI CCANNNNNNTGG 1 cut(s) 362
BstYI RGATCY 3 cut(s) 569, 772, 1151
BsuRI GGCC 2 cut(s) 526, 838
BtrI CACGTC 2 cut(s) 274, 551
BtsCI GGATG 3 cut(s) 55, 230, 1034
BtsIMutI CAGTG 5 cut(s) 60, 409, 914, 941, 1177
Cac8I GCNNGC 2 cut(s) 805, 865
CviAII CATG 5 cut(s) 201, 299, 362, 412, 804
CviJI RGCY 8 cut(s) 100, 137, 526, 666, 826, 838, 860, 867
CviKI_1 RGCY 8 cut(s) 100, 137, 526, 666, 826, 838, 860, 867
DdeI CTNAG 2 cut(s) 391, 840
DpnI GATC 5 cut(s) 168, 353, 571, 774, 1153
DpnII GATC 5 cut(s) 166, 351, 569, 772, 1151
DraI TTTAAA 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
EciI GGCGGA 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 1097
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoRI GAATTC 2 cut(s) 107, 674
EcoT22I ATGCAT 3 cut(s) 193, 202, 809
Esp3I CGTCTC 1 cut(s) 616
FaeI CATG 5 cut(s) 204, 302, 365, 415, 807
FaiI YATR 8 cut(s) 185, 202, 300, 363, 413, 805, 857, 1014
FaqI GGGAC 1 cut(s) 284
FatI CATG 5 cut(s) 200, 298, 361, 411, 803
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 501, 861
FokI GGATG 3 cut(s) 42, 237, 1041
Fsp4HI GCNGC 2 cut(s) 501, 861
FspBI CTAG 7 cut(s) 504, 546, 663, 770, 789, 827, 1140
GluI GCNGC 2 cut(s) 501, 861
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 2 cut(s) 526, 838
Hin1II CATG 5 cut(s) 204, 302, 365, 415, 807
HincII GTYRAC 2 cut(s) 17, 540
HindII GTYRAC 2 cut(s) 17, 540
HinfI GANTC 2 cut(s) 5, 994
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 4 cut(s) 17, 207, 540, 563
Hpy188I TCNGA 5 cut(s) 113, 196, 394, 621, 671
Hpy188III TCNNGA 7 cut(s) 36, 170, 431, 573, 585, 609, 1034
Hpy8I GTNNAC 4 cut(s) 17, 207, 540, 563
Hpy99I CGWCG 2 cut(s) 18, 21
HpyAV CCTTC 3 cut(s) 42, 371, 501
HpyCH4III ACNGT 6 cut(s) 46, 163, 404, 909, 936, 1172
HpyCH4IV ACGT 4 cut(s) 273, 550, 900, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 663
HpyF3I CTNAG 2 cut(s) 391, 840
HpySE526I ACGT 4 cut(s) 273, 550, 900, 927
Hsp92II CATG 5 cut(s) 204, 302, 365, 415, 807
Kzo9I GATC 5 cut(s) 166, 351, 569, 772, 1151
LmnI GCTCC 2 cut(s) 823, 961
Lsp1109I GCAGC 2 cut(s) 487, 847
LweI GCATC 6 cut(s) 165, 187, 200, 215, 267, 666
MaeI CTAG 7 cut(s) 504, 546, 663, 770, 789, 827, 1140
MaeII ACGT 4 cut(s) 273, 550, 900, 927
MaeIII GTNAC 4 cut(s) 119, 398, 407, 463
MalI GATC 5 cut(s) 168, 353, 571, 774, 1153
MboI GATC 5 cut(s) 166, 351, 569, 772, 1151
MboII GAAGA 8 cut(s) 351, 386, 395, 455, 458, 461, 767, 1049
MfeI CAATTG 1 cut(s) 347
MflI RGATCY 3 cut(s) 569, 772, 1151
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 9 cut(s) 66, 107, 230, 347, 493, 529, 674, 737, 1105
MlyI GAGTC 2 cut(s) 14, 988
MmeI TCCRAC 4 cut(s) 599, 703, 1006, 1022
MnlI CCTC 8 cut(s) 32, 87, 418, 512, 569, 592, 605, 717
Mph1103I ATGCAT 3 cut(s) 193, 202, 809
MroXI GAANNNNTTC 2 cut(s) 46, 604
MseI TTAA 5 cut(s) 71, 233, 741, 810, 819
MslI CAYNNNNRTG 3 cut(s) 360, 1170, 1173
MspCI CTTAAG 1 cut(s) 818
MunI CAATTG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 197, 663
NdeII GATC 5 cut(s) 166, 351, 569, 772, 1151
NlaIII CATG 5 cut(s) 204, 302, 365, 415, 807
NlaIV GGNNCC 3 cut(s) 429, 580, 1153
NmuCI GTSAC 1 cut(s) 398
NsiI ATGCAT 3 cut(s) 193, 202, 809
NspI RCATGY 2 cut(s) 415, 807
PaeI GCATGC 1 cut(s) 807
PdmI GAANNNNTTC 2 cut(s) 46, 604
PkrI GCNGC 2 cut(s) 502, 862
PleI GAGTC 2 cut(s) 13, 988
PpsI GAGTC 2 cut(s) 13, 988
PshBI ATTAAT 1 cut(s) 810
Psp1406I AACGTT 2 cut(s) 900, 927
PspN4I GGNNCC 3 cut(s) 429, 580, 1153
PsuI RGATCY 3 cut(s) 569, 772, 1151
RseI CAYNNNNRTG 3 cut(s) 360, 1170, 1173
SalI GTCGAC 1 cut(s) 15
SaqAI TTAA 5 cut(s) 71, 233, 741, 810, 819
SatI GCNGC 2 cut(s) 501, 861
Sau3AI GATC 5 cut(s) 166, 351, 569, 772, 1151
SchI GAGTC 2 cut(s) 14, 988
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 6 cut(s) 165, 187, 200, 215, 267, 666
SfcI CTRYAG 1 cut(s) 81
SgrDI CGTCGACG 1 cut(s) 15
SmiMI CAYNNNNRTG 3 cut(s) 360, 1170, 1173
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SphI GCATGC 1 cut(s) 807
Sse9I AATT 9 cut(s) 66, 107, 230, 347, 493, 529, 674, 737, 1105
SsiI CCGC 5 cut(s) 257, 543, 749, 765, 1145
SspI AATATT 2 cut(s) 486, 1190
SspMI CTAG 7 cut(s) 504, 546, 663, 770, 789, 827, 1140
TaaI ACNGT 6 cut(s) 46, 163, 404, 909, 936, 1172
TaiI ACGT 4 cut(s) 276, 553, 903, 930
TaqI TCGA 1 cut(s) 16
TasI AATT 9 cut(s) 66, 107, 230, 347, 493, 529, 674, 737, 1105
Tru1I TTAA 5 cut(s) 71, 233, 741, 810, 819
Tru9I TTAA 5 cut(s) 71, 233, 741, 810, 819
TscAI CASTG 5 cut(s) 67, 409, 914, 941, 1177
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 2 cut(s) 500, 860
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 7 cut(s) 120, 172, 387, 495, 750, 785, 838
TspGWI ACGGA 2 cut(s) 34, 1002
TspRI CASTG 5 cut(s) 67, 409, 914, 941, 1177
Vha464I CTTAAG 1 cut(s) 818
VneI GTGCAC 1 cut(s) 561
VspI ATTAAT 1 cut(s) 810
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 6 cut(s) 66, 107, 493, 529, 674, 737
XceI RCATGY 2 cut(s) 415, 807
XmiI GTMKAC 1 cut(s) 16
XmnI GAANNNNTTC 2 cut(s) 46, 604
XspI CTAG 7 cut(s) 504, 546, 663, 770, 789, 827, 1140
Zsp2I ATGCAT 3 cut(s) 193, 202, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.