AT3G32904
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020199
Physical Location & Seq
Reverse (-)
13451438 .. 13452807
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G32904.1

Sequence Viewer

Length: 993 bp
ATGGGAAATTACCGTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAGTTTAACAAGGAGTTTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAACTAAAAAGAAAGTACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTTGATACTACTACATCTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAACCTCAATTCTCTGTGAACCAAAGAAGAGAACAGTTGGTGAATGATGGTTTGGACAATGATGAAGGTCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCTTGAGACACAAGAAAACGAAGAGATTCCCACGTCTAGAATTCAACAACGAGGTGGACTAAGGCGTGGAAGTAGTTCGCAAAGAGGTGCAGGAAACTTCCAAATTTCTACCAGGATTGGTTCACGAGGAAGTCGTAGAAAACAATCATTTGAGACAACTCTAACAGATACAATAACTGGCTTAAGAGAGTTTCAGCGCCAAAGTTTACAACAGATGCGCCCGAATTGTTTTGACAAAGATGATTACAACAAATTCGATATGGCTATGAAGTTATTTGAATCAATGAACCTTCCGAATGACACTGATTTTTATTGGGCTTGCATTCATGCATTTAAGGCAGAAATTTTTTGGCGTAAGTACTTCATTAATAGAGCTGAAAGAACCGTCGAAGATAATCTGAAATTTTTACAAGCTCTTACTAGAGATACACGAGATAATGAATATGTGGGAAAACGTCAATGGGGTCATGGTTTTCAACAATGGGGAACACCTCCTACTGCTCCGCAATGGAATTCACCTTCAAATGTTCCACAATGGACAATTCCACCAACTACACCACAATGGGGTACACCTTCTAGTATGCCGCAATGGAGTTCATCTCCAACTGCTCCGCAATTGAGTTCACCTCCAACTGCTCCGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 vWA-TerF-like

Protein Analysis

330

Amino Acids

38.57

Weight (kDa)

8.69

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 76 2.2e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35820 AT1G43720 AT3G30520 AT3G32904 AT3G42870 AT5G36080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 4 cut(s) 851, 932, 959, 986
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 7 cut(s) 44, 387, 450, 599, 690, 749, 859
AfaI GTAC 4 cut(s) 134, 143, 707, 916
AfiI CCNNNNNNNGG 1 cut(s) 911
AflII CTTAAG 1 cut(s) 529
AgsI TTSAA 6 cut(s) 19, 314, 392, 626, 824, 870
AjiI CACGTC 1 cut(s) 381
AjnI CCWGG 1 cut(s) 458
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 3 cut(s) 151, 722, 761
AluI AGCT 3 cut(s) 151, 722, 761
Alw26I GTCTC 2 cut(s) 347, 494
AlwI GGATC 1 cut(s) 17
ApoI RAATTY 7 cut(s) 44, 387, 450, 599, 690, 749, 859
AseI ATTAAT 1 cut(s) 714
Asp700I GAANNNNTTC 2 cut(s) 372, 421
AspLEI GCGC 2 cut(s) 546, 567
AsuHPI GGTGA 4 cut(s) 283, 338, 855, 963
BauI CACGAG 2 cut(s) 471, 777
BccI CCATC 2 cut(s) 272, 317
BciT130I CCWGG 1 cut(s) 460
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 347, 494
BfaI CTAG 3 cut(s) 384, 768, 924
BfoI RGCGCY 1 cut(s) 547
BfrI CTTAAG 1 cut(s) 529
BisI GCNGC 1 cut(s) 932
BlsI GCNGC 1 cut(s) 933
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 1 cut(s) 460
BmgBI CACGTC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 460
BmsI GCATC 1 cut(s) 552
BplI GAGNNNNNCTC 4 cut(s) 931, 963, 958, 990
BpuEI CTTGAG 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 911
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 2 cut(s) 860, 941
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 911
BseMI GCAATG 2 cut(s) 860, 941
BseNI ACTGG 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 911
BsmAI GTCTC 2 cut(s) 347, 494
BsmI GAATGC 1 cut(s) 669
Bsp143I GATC 2 cut(s) 22, 115
BspACI CCGC 4 cut(s) 851, 932, 959, 986
BspPI GGATC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 529
BsrDI GCAATG 2 cut(s) 860, 941
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 22, 115
BssNAI GTATAC 1 cut(s) 307
BssSI CACGAG 2 cut(s) 471, 777
Bst1107I GTATAC 1 cut(s) 307
Bst2BI CACGAG 2 cut(s) 471, 777
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 4 cut(s) 14, 267, 341, 733
Bst6I CTCTTC 2 cut(s) 253, 363
BstAFI CTTAAG 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 667
BstDEI CTNAG 1 cut(s) 407
BstDSI CCRYGG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 547
BstHHI GCGC 2 cut(s) 546, 567
BstKTI GATC 2 cut(s) 25, 118
BstMAI GTCTC 2 cut(s) 347, 494
BstMBI GATC 2 cut(s) 22, 115
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstNI CCWGG 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 458
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BstZ17I GTATAC 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 667
CfoI GCGC 2 cut(s) 546, 567
Csp6I GTAC 4 cut(s) 133, 142, 706, 915
CviAII CATG 4 cut(s) 216, 302, 674, 815
CviJI RGCY 6 cut(s) 151, 528, 611, 665, 722, 761
CviKI_1 RGCY 6 cut(s) 151, 528, 611, 665, 722, 761
CviQI GTAC 4 cut(s) 133, 142, 706, 915
DdeI CTNAG 1 cut(s) 407
DpnI GATC 2 cut(s) 24, 117
DpnII GATC 2 cut(s) 22, 115
Eam1104I CTCTTC 2 cut(s) 253, 363
EarI CTCTTC 2 cut(s) 253, 363
Eco32I GATATC 1 cut(s) 201
EcoRI GAATTC 2 cut(s) 387, 859
EcoRII CCWGG 1 cut(s) 458
EcoRV GATATC 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 679
FaeI CATG 4 cut(s) 219, 305, 677, 818
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 4 cut(s) 215, 301, 673, 814
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 932
Fsp4HI GCNGC 1 cut(s) 932
FspBI CTAG 3 cut(s) 384, 768, 924
GlaI GCGC 2 cut(s) 545, 566
GluI GCNGC 1 cut(s) 932
HaeII RGCGCY 1 cut(s) 547
HhaI GCGC 2 cut(s) 546, 567
Hin1II CATG 4 cut(s) 219, 305, 677, 818
Hin6I GCGC 2 cut(s) 544, 565
HinP1I GCGC 2 cut(s) 544, 565
HinfI GANTC 2 cut(s) 373, 626
HphI GGTGA 4 cut(s) 283, 338, 855, 963
Hpy166II GTNNAC 8 cut(s) 233, 250, 307, 404, 470, 554, 917, 971
Hpy188I TCNGA 2 cut(s) 642, 747
Hpy188III TCNNGA 3 cut(s) 350, 384, 471
Hpy8I GTNNAC 8 cut(s) 233, 250, 307, 404, 470, 554, 917, 971
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 4 cut(s) 290, 647, 876, 930
HpyCH4III ACNGT 4 cut(s) 14, 267, 341, 733
HpyCH4IV ACGT 2 cut(s) 380, 802
HpyCH4V TGCA 4 cut(s) 334, 437, 669, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpyF3I CTNAG 1 cut(s) 407
HpySE526I ACGT 2 cut(s) 380, 802
Hsp92II CATG 4 cut(s) 219, 305, 677, 818
HspAI GCGC 2 cut(s) 544, 565
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 22, 115
LmnI GCTCC 4 cut(s) 148, 853, 961, 988
LpnPI CCDG 4 cut(s) 423, 445, 472, 510
LweI GCATC 1 cut(s) 552
MaeI CTAG 3 cut(s) 384, 768, 924
MaeII ACGT 2 cut(s) 380, 802
MalI GATC 2 cut(s) 24, 117
MboI GATC 2 cut(s) 22, 115
MboII GAAGA 3 cut(s) 270, 380, 749
MfeI CAATTG 1 cut(s) 962
MflI RGATCY 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 974
MnlI CCTC 6 cut(s) 246, 392, 425, 467, 849, 984
Mph1103I ATGCAT 1 cut(s) 679
MroXI GAANNNNTTC 2 cut(s) 372, 421
MseI TTAA 6 cut(s) 63, 75, 81, 530, 681, 714
MslI CAYNNNNRTG 1 cut(s) 907
MspCI CTTAAG 1 cut(s) 529
MspR9I CCNGG 1 cut(s) 460
MunI CAATTG 1 cut(s) 962
Mva1269I GAATGC 1 cut(s) 669
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 1 cut(s) 683
NdeI CATATG 1 cut(s) 319
NdeII GATC 2 cut(s) 22, 115
NlaIII CATG 4 cut(s) 219, 305, 677, 818
NsiI ATGCAT 1 cut(s) 679
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PctI GAATGC 1 cut(s) 669
PdmI GAANNNNTTC 2 cut(s) 372, 421
PfeI GAWTC 2 cut(s) 373, 626
PkrI GCNGC 1 cut(s) 933
PshBI ATTAAT 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PsrI GAACNNNNNNTAC 2 cut(s) 826, 858
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 4 cut(s) 134, 143, 707, 916
RsaNI GTAC 4 cut(s) 133, 142, 706, 915
RseI CAYNNNNRTG 1 cut(s) 907
SaqAI TTAA 6 cut(s) 63, 75, 81, 530, 681, 714
SatI GCNGC 1 cut(s) 932
Sau3AI GATC 2 cut(s) 22, 115
ScaI AGTACT 1 cut(s) 707
ScrFI CCNGG 1 cut(s) 460
SfaNI GCATC 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 907
SmlI CTYRAG 2 cut(s) 350, 529
SmoI CTYRAG 2 cut(s) 350, 529
SsiI CCGC 4 cut(s) 851, 932, 959, 986
SspMI CTAG 3 cut(s) 384, 768, 924
StyD4I CCNGG 1 cut(s) 458
TaaI ACNGT 4 cut(s) 14, 267, 341, 733
TaiI ACGT 2 cut(s) 383, 805
TaqI TCGA 2 cut(s) 603, 735
TatI WGTACW 3 cut(s) 132, 141, 705
TauI GCSGC 1 cut(s) 934
TfiI GAWTC 2 cut(s) 373, 626
Tru1I TTAA 6 cut(s) 63, 75, 81, 530, 681, 714
Tru9I TTAA 6 cut(s) 63, 75, 81, 530, 681, 714
TscAI CASTG 1 cut(s) 655
TspDTI ATGAA 8 cut(s) 170, 309, 629, 647, 662, 700, 801, 933
TspRI CASTG 1 cut(s) 655
Vha464I CTTAAG 1 cut(s) 529
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 7 cut(s) 44, 387, 450, 599, 690, 749, 859
XbaI TCTAGA 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 2 cut(s) 372, 421
XspI CTAG 3 cut(s) 384, 768, 924
ZrmI AGTACT 1 cut(s) 707
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.