AT5G36080
MYB Family

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
14184423 .. 14185277
855 bp
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UTR
Exon/CDS
Intron
AT5G36080.1

Sequence Viewer

Length: 462 bp
ATGAATAATTATACTATTAAGCATCCTACTTCTATCGGTAGAGACTATATGGTTGAAAAGTTCAATCAAGTGTTCAACATGAATAGAACTTATGTTTTCTTCAAAAACAAGCATGATGAATTAAAAAAGAGTTACAAGGGATGGAAGTTTCTTACGCATAAAACTGGCATCTCTGTTGATCCTAAGACATCAATGATATTTGCATATGACGTATGGTGGAGAGAACGAGAGTTTGTAGGCGTGGAAGTAGTTCACAAAGATCTGGGAGAAGCGCATAAGTTTTTGTTGGAAGTGGTTCACGAGGAAATCGTAGAAGACAATCTTTTGAAACAACTATACAAGACACTATTGCTGGTTATAGAGAATTTCAACGACAAAGTTTTCAACAACTTCGTCCCGATGCTTTTGACCAAGATGATTACAATGAATTTAAAAAGGCAGAAGCGATATTTGTTGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

18.53

Weight (kDa)

9.5

Isoelectric Point (pI)

26.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 15 - 75 2.9e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35820 AT1G43720 AT3G30520 AT3G32904 AT3G42870 AT5G36080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 2 cut(s) 364, 427
AgsI TTSAA 7 cut(s) 56, 64, 76, 103, 328, 370, 385
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 1 cut(s) 173
ApoI RAATTY 2 cut(s) 364, 427
Asp700I GAANNNNTTC 2 cut(s) 249, 294
AspLEI GCGC 2 cut(s) 274, 459
BauI CACGAG 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 321
BccI CCATC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 460
BglII AGATCT 1 cut(s) 259
BmsI GCATC 3 cut(s) 31, 177, 390
BpiI GAAGAC 1 cut(s) 321
Bse1I ACTGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 22, 146
BseNI ACTGG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 380
Bsp143I GATC 2 cut(s) 178, 259
BspPI GGATC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 169
BssMI GATC 2 cut(s) 178, 259
BssSI CACGAG 1 cut(s) 299
Bst2BI CACGAG 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 22, 146
BstHHI GCGC 2 cut(s) 274, 459
BstKTI GATC 2 cut(s) 181, 262
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 2 cut(s) 178, 259
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtsCI GGATG 2 cut(s) 22, 146
CfoI GCGC 2 cut(s) 274, 459
CviAII CATG 2 cut(s) 79, 113
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 180, 261
DpnII GATC 2 cut(s) 178, 259
DraI TTTAAA 1 cut(s) 432
FaeI CATG 2 cut(s) 82, 116
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 380
FatI CATG 2 cut(s) 78, 112
FauNDI CATATG 1 cut(s) 205
FokI GGATG 2 cut(s) 9, 153
FspBI CTAG 1 cut(s) 460
GlaI GCGC 2 cut(s) 273, 458
HhaI GCGC 2 cut(s) 274, 459
Hin1II CATG 2 cut(s) 82, 116
Hin6I GCGC 2 cut(s) 272, 457
HinP1I GCGC 2 cut(s) 272, 457
Hpy166II GTNNAC 2 cut(s) 253, 298
Hpy188III TCNNGA 2 cut(s) 299, 397
Hpy8I GTNNAC 2 cut(s) 253, 298
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 2 cut(s) 82, 116
HspAI GCGC 2 cut(s) 272, 457
Kzo9I GATC 2 cut(s) 178, 259
LpnPI CCDG 3 cut(s) 150, 248, 338
LweI GCATC 3 cut(s) 31, 177, 390
MaeI CTAG 1 cut(s) 460
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 180, 261
MboI GATC 2 cut(s) 178, 259
MboII GAAGA 2 cut(s) 91, 326
MflI RGATCY 1 cut(s) 259
MluCI AATT 4 cut(s) 7, 119, 364, 427
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 1 cut(s) 295
MroXI GAANNNNTTC 2 cut(s) 249, 294
MseI TTAA 3 cut(s) 18, 122, 431
NdeI CATATG 1 cut(s) 205
NdeII GATC 2 cut(s) 178, 259
NlaIII CATG 2 cut(s) 82, 116
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PdmI GAANNNNTTC 2 cut(s) 249, 294
PsuI RGATCY 1 cut(s) 259
SaqAI TTAA 3 cut(s) 18, 122, 431
Sau3AI GATC 2 cut(s) 178, 259
SetI ASST 1 cut(s) 213
SfaNI GCATC 3 cut(s) 31, 177, 390
Sse9I AATT 4 cut(s) 7, 119, 364, 427
SspMI CTAG 1 cut(s) 460
TaiI ACGT 1 cut(s) 213
TasI AATT 4 cut(s) 7, 119, 364, 427
Tru1I TTAA 3 cut(s) 18, 122, 431
Tru9I TTAA 3 cut(s) 18, 122, 431
TspDTI ATGAA 4 cut(s) 17, 95, 132, 440
XapI RAATTY 2 cut(s) 364, 427
XmnI GAANNNNTTC 2 cut(s) 249, 294
XspI CTAG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.