AT1G43720
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020199
Physical Location & Seq
Forward (+)
16495080 .. 16496078
999 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43720.1

Sequence Viewer

Length: 945 bp
ATGCAACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTCTGCTCGTCAAAGAAGAGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGACAGTGATAGTGGTAACATGCCAGAAGCCGAGGTTCCTGAAACGCAAGAAGAAGAAGAAGTGTATCGTGTTACCATTGATGATGATGAATCAACCGCTAGACGTGGAAGTAGTGCACAAAGATCTGGAGGAAGCTCACTAGTTTCTATAGGAAGTGGTTCACGAAGAAGTCATAGACGACAATCCTTTGAAACAACAATACAAGACAGCATCACTGGCTTCAGAGAATTCCAACGACAAAGTTTTCAACAACTTCGTCCTGGTGCTTTTGATCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTTCCTAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCGTAAGTATTTGATTGATATAACTGCAAGCACCGACGAGGATAAGGTCCAACTGTTAGAAGCTATGACTGGTGTTTCACGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCAAGCCATTCATTTGGGAGTCCACATTCAGGAGGTATATCATCTGGAAGTCCATCCTCTGTGGGTAATTGGGAGGCAAAATTCACCCAGTTTTTGGGGTCCCATTTATCCATAGTGGGAAACACCACCAAACGTTGCACAATGGAAAACACCACCAAATGCACAGTGGGACACGCCACCAAATGTTCCACAGTGGGGATCATCACCAAAGGCTCCACAATGGCGGCAAACAGAAAAATTTTAACAAGGTGGTTCAAGCGGAACGACTCCAACAAATGTTCAATATGGATTTTCAGTTGGAAGTCAAGGAGATTGTGTAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 vWA-TerF-like

Protein Analysis

314

Amino Acids

35.39

Weight (kDa)

7.17

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35820 AT1G43720 AT3G30520 AT3G32904 AT3G42870 AT5G36080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 712
AccII CGCG 1 cut(s) 437
AciI CCGC 4 cut(s) 213, 419, 842, 877
AclI AACGTT 1 cut(s) 751
AclWI GGATC 2 cut(s) 70, 824
AcsI RAATTY 4 cut(s) 344, 407, 698, 855
AcuI CTGAAG 1 cut(s) 322
AfiI CCNNNNNNNGG 3 cut(s) 647, 712, 813
AflII CTTAAG 1 cut(s) 488
AgsI TTSAA 6 cut(s) 32, 308, 365, 621, 874, 900
AhlI ACTAGT 1 cut(s) 256
AjiI CACGTC 1 cut(s) 221
AjnI CCWGG 1 cut(s) 376
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 3 cut(s) 252, 496, 569
AluI AGCT 3 cut(s) 252, 496, 569
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 17
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 2 cut(s) 70, 824
ApaLI GTGCAC 1 cut(s) 231
ApoI RAATTY 4 cut(s) 344, 407, 698, 855
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 274
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 2 cut(s) 553, 717
AsuHPI GGTGA 3 cut(s) 116, 694, 814
AvaII GGWCC 2 cut(s) 553, 717
BaeGI GKGCMC 1 cut(s) 235
BauI CACGAG 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 235
BccI CCATC 1 cut(s) 679
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 17
BcuI ACTAGT 1 cut(s) 256
BfaI CTAG 4 cut(s) 216, 257, 459, 497
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 488
BglII AGATCT 1 cut(s) 239
BisI GCNGC 1 cut(s) 843
BlsI GCNGC 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 2 cut(s) 553, 717
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 553, 717
BmiI GGNNCC 4 cut(s) 153, 718, 719, 832
BmrFI CCNGG 1 cut(s) 378
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 700
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 450
BsaAI YACGTR 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 1 cut(s) 919
Bsc4I CCNNNNNNNGG 3 cut(s) 647, 712, 813
Bse1I ACTGG 3 cut(s) 337, 580, 706
Bse8I GATNNNNATC 1 cut(s) 431
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 671
BseJI GATNNNNATC 1 cut(s) 431
BseLI CCNNNNNNNGG 3 cut(s) 647, 712, 813
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 3 cut(s) 337, 580, 706
BseSI GKGCMC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 235
BslFI GGGAC 2 cut(s) 703, 801
BslI CCNNNNNNNGG 3 cut(s) 647, 712, 813
BsmAI GTCTC 1 cut(s) 17
BsmFI GGGAC 2 cut(s) 703, 801
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 4 cut(s) 75, 239, 388, 816
BspACI CCGC 4 cut(s) 213, 419, 842, 877
BspCNI CTCAG 1 cut(s) 128
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 4 cut(s) 153, 718, 719, 832
BspPI GGATC 2 cut(s) 70, 824
BspTI CTTAAG 1 cut(s) 488
BsrI ACTGG 3 cut(s) 337, 580, 706
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 75, 239, 388, 816
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 5 cut(s) 122, 561, 612, 784, 811
Bst6I CTCTTC 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 488
BstBAI YACGTR 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 475, 535
BstDEI CTNAG 2 cut(s) 115, 450
BstF5I GGATG 1 cut(s) 671
BstFNI CGCG 1 cut(s) 437
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 4 cut(s) 78, 242, 391, 819
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 75, 239, 388, 816
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 2 cut(s) 139, 477
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 239
BstXI CCANNNNNNTGG 2 cut(s) 86, 632
BstYI RGATCY 1 cut(s) 239
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 671
BtsIMutI CAGTG 4 cut(s) 127, 330, 789, 816
Cac8I GCNNGC 2 cut(s) 475, 535
CfoI GCGC 1 cut(s) 439
Cfr13I GGNCC 2 cut(s) 553, 717
CviAII CATG 4 cut(s) 23, 86, 136, 474
CviJI RGCY 7 cut(s) 146, 252, 336, 496, 569, 624, 831
CviKI_1 RGCY 7 cut(s) 146, 252, 336, 496, 569, 624, 831
DdeI CTNAG 2 cut(s) 115, 450
DpnI GATC 4 cut(s) 77, 241, 390, 818
DpnII GATC 4 cut(s) 75, 239, 388, 816
DraI TTTAAA 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 553, 717
Eco57I CTGAAG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 717
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 479
FaeI CATG 4 cut(s) 26, 89, 139, 477
FaqI GGGAC 2 cut(s) 703, 801
FatI CATG 4 cut(s) 22, 85, 135, 473
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 843
FokI GGATG 1 cut(s) 658
Fsp4HI GCNGC 1 cut(s) 843
FspBI CTAG 4 cut(s) 216, 257, 459, 497
GlaI GCGC 1 cut(s) 438
GluI GCNGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 264
HhaI GCGC 1 cut(s) 439
Hin1II CATG 4 cut(s) 26, 89, 139, 477
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HinfI GANTC 3 cut(s) 206, 637, 884
HphI GGTGA 3 cut(s) 116, 694, 814
Hpy166II GTNNAC 3 cut(s) 233, 278, 641
Hpy188I TCNGA 2 cut(s) 118, 341
Hpy188III TCNNGA 6 cut(s) 155, 243, 279, 392, 648, 663
Hpy8I GTNNAC 3 cut(s) 233, 278, 641
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 5 cut(s) 122, 561, 612, 784, 811
HpyCH4IV ACGT 3 cut(s) 220, 586, 751
HpyCH4V TGCA 7 cut(s) 4, 233, 477, 485, 533, 756, 780
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 2 cut(s) 115, 450
HpySE526I ACGT 3 cut(s) 220, 586, 751
Hsp92II CATG 4 cut(s) 26, 89, 139, 477
HspAI GCGC 1 cut(s) 437
KflI GGGWCCC 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 4 cut(s) 75, 239, 388, 816
LmnI GCTCC 2 cut(s) 493, 836
LweI GCATC 1 cut(s) 336
MaeI CTAG 4 cut(s) 216, 257, 459, 497
MaeII ACGT 3 cut(s) 220, 586, 751
MaeIII GTNAC 4 cut(s) 131, 187, 587, 935
MalI GATC 4 cut(s) 77, 241, 390, 818
MboI GATC 4 cut(s) 75, 239, 388, 816
MboII GAAGA 8 cut(s) 75, 110, 119, 179, 182, 185, 294, 437
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 6 cut(s) 71, 344, 407, 685, 698, 855
MlyI GAGTC 2 cut(s) 646, 878
MmeI TCCRAC 4 cut(s) 373, 580, 896, 912
MnlI CCTC 6 cut(s) 142, 239, 538, 644, 685, 685
Mph1103I ATGCAT 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 4 cut(s) 411, 480, 489, 860
MslI CAYNNNNRTG 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 378
MunI CAATTG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 333
NdeII GATC 4 cut(s) 75, 239, 388, 816
NlaIII CATG 4 cut(s) 26, 89, 139, 477
NlaIV GGNNCC 4 cut(s) 153, 718, 719, 832
NmeAIII GCCGAG 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 479
NspI RCATGY 2 cut(s) 139, 477
PaeI GCATGC 1 cut(s) 477
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 206
PflMI CCANNNNNTGG 1 cut(s) 712
PkrI GCNGC 1 cut(s) 844
PleI GAGTC 2 cut(s) 645, 878
PpsI GAGTC 2 cut(s) 645, 878
Ppu21I YACGTR 1 cut(s) 587
PpuMI RGGWCCY 1 cut(s) 717
PshBI ATTAAT 1 cut(s) 480
Psp1406I AACGTT 1 cut(s) 751
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 4 cut(s) 153, 718, 719, 832
PspPI GGNCC 2 cut(s) 553, 717
PspPPI RGGWCCY 1 cut(s) 717
PsuI RGATCY 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 4 cut(s) 411, 480, 489, 860
SatI GCNGC 1 cut(s) 843
Sau3AI GATC 4 cut(s) 75, 239, 388, 816
Sau96I GGNCC 2 cut(s) 553, 717
SchI GAGTC 2 cut(s) 646, 878
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 2 cut(s) 553, 717
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SpeI ACTAGT 1 cut(s) 256
SphI GCATGC 1 cut(s) 477
Sse9I AATT 6 cut(s) 71, 344, 407, 685, 698, 855
SsiI CCGC 4 cut(s) 213, 419, 842, 877
SspMI CTAG 4 cut(s) 216, 257, 459, 497
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 5 cut(s) 122, 561, 612, 784, 811
TaiI ACGT 3 cut(s) 223, 589, 754
TasI AATT 6 cut(s) 71, 344, 407, 685, 698, 855
TauI GCSGC 1 cut(s) 845
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 4 cut(s) 411, 480, 489, 860
Tru9I TTAA 4 cut(s) 411, 480, 489, 860
TscAI CASTG 4 cut(s) 127, 337, 789, 816
TspDTI ATGAA 5 cut(s) 111, 219, 420, 455, 618
TspRI CASTG 4 cut(s) 127, 337, 789, 816
Van91I CCANNNNNTGG 1 cut(s) 712
Vha464I CTTAAG 1 cut(s) 488
VneI GTGCAC 1 cut(s) 231
VpaK11BI GGWCC 2 cut(s) 553, 717
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 4 cut(s) 344, 407, 698, 855
XceI RCATGY 2 cut(s) 139, 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 4 cut(s) 216, 257, 459, 497
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.