AT3G42870
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020199
Physical Location & Seq
Forward (+)
14949456 .. 14951279
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G42870.1

Sequence Viewer

Length: 939 bp
ATGGCTAAGATGTTCGGGTTCAAGCGCTTAAGCGGTCAGATGGCATTTGTTGCAATTCTAAGGCATGAAGATTACTCAGACACTGATAGTGGTAACATGCCACAAACCGAGGTTCCTGAAATGCAAGAAGAAGAAGAAGTGTATCGTGTTACCATTGATGATGATGAAATATTCCAACATTGTGCTGCTAGAAGGCAACAACGAGGTAGGCCAAATTTGCAGTCAACCGCTAAACGTGAAAGTAGTGCACAAAGATCTGGAGGAAGCTCACGAGTTTCTATTAGAAGTGGTTCACGAGGAAGTCGAAAACGACAATCATTTGAAACAACAATAGAAGACAATATCACTAGCTTCAGAGAATTCCAACGACAAAGTTTTCATCCTGGTGCTTTTGACCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCCCACTAGATCTTCCCAAGCACACTAGATTTTATTGGGCATGCATTAATGCACTTGAGGAGCTAGTATATTGGCGTAAGTATTTCATTGATATAGCTGCAAGCACCGACGAGGATAAGGTACAACTGTTAGAAGCTATGACTGGTGTTTCCCCCAACAACCAAGATGTGCCAAAACAGTTAGGTTCAGGTCATTCATTTGGGCACATTCAGGAGTGGGGAACACCACCCAATGCTCCACACTGGGGAACACCACTAATTGCTCCACAATGGCGGCAAATATTTGGAAAATTTCAGCAAGTTGGAAGTCAAGGAGATGGTGCAACAATGGAAACTCCACCGATCATACAACAAACATCATCATCCGGTGTCGGTTTCACAAATTATTTTGAAACTGGACAAATACCACAAACACCTAGACCAGGAGGTCTCTTTAATATTTATGGAACTCCGCAAGGATCCAATGCAAATCATCACAGTAATGTAGGAGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 vWA-TerF-like

Protein Analysis

312

Amino Acids

35.19

Weight (kDa)

5.44

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35820 AT1G43720 AT3G30520 AT3G32904 AT3G42870 AT5G36080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 864
AciI CCGC 5 cut(s) 33, 228, 425, 712, 890
AclWI GGATC 2 cut(s) 891, 904
AcsI RAATTY 4 cut(s) 214, 359, 413, 728
AcuI CTGAAG 1 cut(s) 337
AfaI GTAC 1 cut(s) 561
AfeI AGCGCT 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 683, 860
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 3 cut(s) 22, 323, 830
AjnI CCWGG 2 cut(s) 382, 859
AluBI AGCT 5 cut(s) 267, 351, 502, 536, 575
AluI AGCT 5 cut(s) 267, 351, 502, 536, 575
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 872
Alw44I GTGCAC 1 cut(s) 246
AlwI GGATC 2 cut(s) 891, 904
AlwNI CAGNNNCTG 1 cut(s) 83
Aor51HI AGCGCT 1 cut(s) 26
AoxI GGCC 1 cut(s) 209
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 185, 536
ApoI RAATTY 4 cut(s) 214, 359, 413, 728
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 27
BaeGI GKGCMC 2 cut(s) 250, 645
BaeI ACNNNNGTAYC 2 cut(s) 551, 584
BamHI GGATCC 1 cut(s) 896
BauI CACGAG 2 cut(s) 270, 294
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 172, 523
BccI CCATC 2 cut(s) 34, 749
BciT130I CCWGG 2 cut(s) 384, 861
BcoDI GTCTC 1 cut(s) 872
BfaI CTAG 6 cut(s) 189, 348, 446, 465, 503, 855
BfoI RGCGCY 1 cut(s) 28
BfrI CTTAAG 1 cut(s) 28
BglII AGATCT 2 cut(s) 254, 448
BisI GCNGC 3 cut(s) 186, 537, 713
BlsI GCNGC 3 cut(s) 187, 538, 714
Bme1390I CCNGG 2 cut(s) 384, 861
BmiI GGNNCC 2 cut(s) 114, 898
BmrFI CCNGG 2 cut(s) 384, 861
BmrI ACTGGG 1 cut(s) 691
BmuI ACTGGG 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 515
BsaBI GATNNNNATC 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 803
Bsc4I CCNNNNNNNGG 2 cut(s) 683, 860
Bse1I ACTGG 3 cut(s) 586, 686, 838
Bse8I GATNNNNATC 1 cut(s) 437
BseBI CCWGG 2 cut(s) 384, 861
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 379, 800
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 2 cut(s) 683, 860
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 3 cut(s) 586, 686, 838
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 2 cut(s) 250, 645
BseXI GCAGC 2 cut(s) 172, 523
BshFI GGCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 804
BslI CCNNNNNNNGG 2 cut(s) 683, 860
BsmAI GTCTC 1 cut(s) 872
BsnI GGCC 1 cut(s) 211
Bso31I GGTCTC 1 cut(s) 872
Bsp1286I GDGCHC 2 cut(s) 250, 645
Bsp143I GATC 4 cut(s) 254, 448, 780, 896
BspACI CCGC 5 cut(s) 33, 228, 425, 712, 890
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 114, 898
BspPI GGATC 2 cut(s) 891, 904
BspTI CTTAAG 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 872
BsrI ACTGG 3 cut(s) 586, 686, 838
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 4 cut(s) 254, 448, 780, 896
BssSI CACGAG 2 cut(s) 270, 294
Bst2BI CACGAG 2 cut(s) 270, 294
Bst2UI CCWGG 2 cut(s) 384, 861
Bst4CI ACNGT 3 cut(s) 567, 618, 917
BstAFI CTTAAG 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 481, 541
BstDEI CTNAG 3 cut(s) 6, 59, 76
BstENI CCTNNNNNAGG 1 cut(s) 858
BstF5I GGATG 2 cut(s) 379, 800
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 4 cut(s) 257, 451, 783, 899
BstMAI GTCTC 1 cut(s) 872
BstMBI GATC 4 cut(s) 254, 448, 780, 896
BstMWI GCNNNNNNNGC 2 cut(s) 50, 217
BstNI CCWGG 2 cut(s) 384, 861
BstNSI RCATGY 2 cut(s) 100, 483
BstSCI CCNGG 2 cut(s) 382, 859
BstSLI GKGCMC 2 cut(s) 250, 645
BstV1I GCAGC 2 cut(s) 172, 523
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 3 cut(s) 254, 448, 896
BstYI RGATCY 3 cut(s) 254, 448, 896
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 379, 800
BtsIMutI CAGTG 2 cut(s) 81, 679
Cac8I GCNNGC 2 cut(s) 481, 541
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 560
CviAII CATG 3 cut(s) 65, 97, 480
CviJI RGCY 7 cut(s) 5, 211, 267, 351, 502, 536, 575
CviKI_1 RGCY 7 cut(s) 5, 211, 267, 351, 502, 536, 575
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 3 cut(s) 6, 59, 76
DpnI GATC 4 cut(s) 256, 450, 782, 898
DpnII GATC 4 cut(s) 254, 448, 780, 896
DraI TTTAAA 1 cut(s) 418
DrdI GACNNNNNNGTC 1 cut(s) 864
DseDI GACNNNNNNGTC 1 cut(s) 864
EciI GGCGGA 1 cut(s) 440
Eco31I GGTCTC 1 cut(s) 872
Eco47III AGCGCT 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoRI GAATTC 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 382, 859
EcoT22I ATGCAT 1 cut(s) 485
FaeI CATG 3 cut(s) 68, 100, 483
FaiI YATR 8 cut(s) 66, 98, 481, 508, 533, 578, 785, 882
FatI CATG 3 cut(s) 64, 96, 479
Fnu4HI GCNGC 3 cut(s) 186, 537, 713
FokI GGATG 2 cut(s) 366, 787
Fsp4HI GCNGC 3 cut(s) 186, 537, 713
FspBI CTAG 6 cut(s) 189, 348, 446, 465, 503, 855
GlaI GCGC 1 cut(s) 26
GluI GCNGC 3 cut(s) 186, 537, 713
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 804
HhaI GCGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 68, 100, 483
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HpaII CCGG 1 cut(s) 804
Hpy166II GTNNAC 3 cut(s) 225, 248, 293
Hpy188I TCNGA 3 cut(s) 39, 79, 356
Hpy188III TCNNGA 5 cut(s) 116, 258, 270, 294, 650
Hpy8I GTNNAC 3 cut(s) 225, 248, 293
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 3 cut(s) 567, 618, 917
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 9 cut(s) 53, 124, 220, 248, 483, 491, 539, 761, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 217
HpyF3I CTNAG 3 cut(s) 6, 59, 76
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 3 cut(s) 68, 100, 483
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 4 cut(s) 254, 448, 780, 896
LmnI GCTCC 3 cut(s) 499, 679, 706
Lsp1109I GCAGC 2 cut(s) 172, 523
MaeI CTAG 6 cut(s) 189, 348, 446, 465, 503, 855
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 2 cut(s) 92, 148
MalI GATC 4 cut(s) 256, 450, 782, 898
MboI GATC 4 cut(s) 254, 448, 780, 896
MboII GAAGA 6 cut(s) 80, 140, 143, 146, 347, 443
MflI RGATCY 3 cut(s) 254, 448, 896
MhlI GDGCHC 2 cut(s) 250, 645
MluCI AATT 7 cut(s) 54, 214, 359, 413, 696, 728, 820
MmeI TCCRAC 3 cut(s) 199, 388, 721
MnlI CCTC 7 cut(s) 103, 197, 254, 290, 490, 544, 857
Mph1103I ATGCAT 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 4 cut(s) 29, 417, 486, 873
MslI CAYNNNNRTG 2 cut(s) 384, 918
MspCI CTTAAG 1 cut(s) 28
MspI CCGG 1 cut(s) 804
MspR9I CCNGG 2 cut(s) 384, 861
MvaI CCWGG 2 cut(s) 384, 861
MwoI GCNNNNNNNGC 2 cut(s) 50, 217
NdeII GATC 4 cut(s) 254, 448, 780, 896
NlaIII CATG 3 cut(s) 68, 100, 483
NlaIV GGNNCC 2 cut(s) 114, 898
NsiI ATGCAT 1 cut(s) 485
NspI RCATGY 2 cut(s) 100, 483
PaeI GCATGC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 289
PkrI GCNGC 3 cut(s) 187, 538, 714
PshBI ATTAAT 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 382, 859
PspGI CCWGG 2 cut(s) 382, 859
PspN4I GGNNCC 2 cut(s) 114, 898
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 3 cut(s) 254, 448, 896
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
RseI CAYNNNNRTG 2 cut(s) 384, 918
SaqAI TTAA 4 cut(s) 29, 417, 486, 873
SatI GCNGC 3 cut(s) 186, 537, 713
Sau3AI GATC 4 cut(s) 254, 448, 780, 896
ScrFI CCNGG 2 cut(s) 384, 861
SduI GDGCHC 2 cut(s) 250, 645
SmiMI CAYNNNNRTG 2 cut(s) 384, 918
SmlI CTYRAG 2 cut(s) 28, 494
SmoI CTYRAG 2 cut(s) 28, 494
SphI GCATGC 1 cut(s) 483
Sse9I AATT 7 cut(s) 54, 214, 359, 413, 696, 728, 820
SsiI CCGC 5 cut(s) 33, 228, 425, 712, 890
SspI AATATT 3 cut(s) 171, 720, 877
SspMI CTAG 6 cut(s) 189, 348, 446, 465, 503, 855
StyD4I CCNGG 2 cut(s) 382, 859
TaaI ACNGT 3 cut(s) 567, 618, 917
TaiI ACGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 304
TasI AATT 7 cut(s) 54, 214, 359, 413, 696, 728, 820
TauI GCSGC 1 cut(s) 715
Tru1I TTAA 4 cut(s) 29, 417, 486, 873
Tru9I TTAA 4 cut(s) 29, 417, 486, 873
TscAI CASTG 2 cut(s) 88, 686
TseI GCWGC 2 cut(s) 185, 536
TspDTI ATGAA 6 cut(s) 81, 180, 368, 426, 514, 624
TspRI CASTG 2 cut(s) 88, 686
Vha464I CTTAAG 1 cut(s) 28
VneI GTGCAC 1 cut(s) 246
VspI ATTAAT 1 cut(s) 486
XagI CCTNNNNNAGG 1 cut(s) 858
XapI RAATTY 4 cut(s) 214, 359, 413, 728
XceI RCATGY 2 cut(s) 100, 483
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 6 cut(s) 189, 348, 446, 465, 503, 855
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.