AT1G46264

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013469
Physical Location & Seq
Forward (+)
17224720 .. 17226541
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G46264.1

Sequence Viewer

Length: 1047 bp
ATGGCGATGATGGTCGAGAATAGCTACGGTGGTTACGGTGGTGGCGGCGGAGAGAGGATACAACTTATGGTCGAAGGTCAAGGCAAAGCTGTTCCGGCTCCGTTTTTGACAAAGACTTATCAACTTGTTGATGATCCTGCGACGGATCATGTCGTTTCTTGGGGTGATGATGATACTACTTTTGTCGTTTGGCGTCCACCGGAGTTTGCTCGTGATCTTCTTCCTAATTACTTTAAACATAACAACTTCTCTAGCTTCGTTCGTCAGCTCAATACTTATGGTTTCAGAAAGATTGTACCAGATCGATGGGAGTTCGCGAACGAGTTTTTCAAGAGAGGAGAGAAACATTTACTCTGCGAAATCCACCGCCGTAAAACATCTCAAATGATACCACAACAACACTCTCCGTTCATGTCACACCACCACGCTCCGCCGCAGATTCCATTCTCCGGCGGTTCTTTCTTCCCATTACCACCACCACGTGTCACCACTCCAGAAGAAGACCATTACTGGTGCGACGACTCACCACCGTCAAGACCACGAGTCATACCACAACAAATTGACACGGCGGCGCAAGTAACGGCATTGAGTGAAGACAACGAGAGATTACGACGAAGCAACACAGTGTTAATGTCGGAACTAGCTCACATGAAGAAACTCTACAACGACATTATCTACTTTGTTCAAAACCATGTCAAGCCTGTTGCTCCAAGTAACAACTCTAGTTATCTCTCTTCATTTCTCCAGAAGCAACAACAACAACAACCTCCAACACTTGATTATTACAATACTGCCACTGTCAATGCCACTAATCTCAATGCTTTGAACTCATCTCCACCAACTTCACAAAGCTCTATTACAGTTCTTGAAGATGATCACACTAATCATCATGATCAGAGTAATATGAGAAAGACAAAGCTTTTTGGAGTTTCGTTGCCTTCTTCTAAGAAGAGATCACATCATTTCTCAGACCAAACAAGCAAAACGAGACTTGTGTTGGATCAGTCTGATCTTGCTTTGAATCTCATGACTGCTTCTACACGTTAA

Protein Analysis

348

Amino Acids

39.61

Weight (kDa)

7.3

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 35 - 124 8.6e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46264
fragaria_vesca FvH4_2g34260
malus_domestica MD08G1098200.v1.1 MD15G1080700.v1.1
prunus_persica Prupe.1G433500_v2.0.a1
pyrus_communis pycom08g08000 pycom15g07520
rosa_chinensis RchiOBHm_Chr6g0308161
rosa_laevigata RLG00000010664
rosa_multiflora Rmu_sc0005706.1_g000009
rosa_roxburghii Rroxscaffold_7G00160400 Rroxscaffold_7G00160490
rosa_rugosa Rorug06G0364300
rosa_samantha Rh6AG473500 Rh6BG484300 Rh6CG489300 Rh6DG475500
rosa_wichuraiana Rw6G041280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 317
AciI CCGC 7 cut(s) 45, 48, 367, 431, 434, 453, 569
AclWI GGATC 3 cut(s) 128, 153, 1008
AcvI CACGTG 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 193
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 449
AflIII ACRYGT 2 cut(s) 481, 1040
AgsI TTSAA 5 cut(s) 331, 686, 826, 869, 1021
AhdI GACNNNNNGTC 1 cut(s) 542
AluBI AGCT 7 cut(s) 24, 89, 255, 268, 644, 852, 919
AluI AGCT 7 cut(s) 24, 89, 255, 268, 644, 852, 919
Alw26I GTCTC 1 cut(s) 982
AlwI GGATC 3 cut(s) 128, 153, 1008
AspLEI GCGC 1 cut(s) 574
AsuHPI GGTGA 3 cut(s) 176, 478, 516
BarI GAAGNNNNNNTAC 2 cut(s) 644, 676
BauI CACGAG 2 cut(s) 210, 540
BbrPI CACGTG 1 cut(s) 482
BbsI GAAGAC 2 cut(s) 507, 600
BccI CCATC 2 cut(s) 4, 300
BceAI ACGGC 3 cut(s) 354, 582, 597
BciVI GTATCC 1 cut(s) 51
BclI TGATCA 2 cut(s) 874, 892
BcoDI GTCTC 1 cut(s) 982
BfaI CTAG 3 cut(s) 252, 641, 723
BfuI GTATCC 1 cut(s) 51
BisI GCNGC 3 cut(s) 46, 434, 570
BlsI GCNGC 3 cut(s) 47, 435, 571
BmeRI GACNNNNNGTC 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 507, 600
BpmI CTGGAG 2 cut(s) 477, 728
Bsa29I ATCGAT 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 1 cut(s) 515
BseCI ATCGAT 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 317
BshVI ATCGAT 1 cut(s) 304
BsiSI CCGG 3 cut(s) 95, 200, 450
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 982
Bsp143I GATC 9 cut(s) 133, 145, 214, 301, 874, 892, 953, 1000, 1009
Bsp68I TCGCGA 1 cut(s) 317
BspACI CCGC 7 cut(s) 45, 48, 367, 431, 434, 453, 569
BspCNI CTCAG 1 cut(s) 980
BspDI ATCGAT 1 cut(s) 304
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 2 cut(s) 889, 1026
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 3 cut(s) 128, 153, 1008
BsrI ACTGG 1 cut(s) 515
BssMI GATC 9 cut(s) 133, 145, 214, 301, 874, 892, 953, 1000, 1009
BssNI GRCGYC 1 cut(s) 193
BssSI CACGAG 2 cut(s) 210, 540
Bst2BI CACGAG 2 cut(s) 210, 540
Bst4CI ACNGT 6 cut(s) 29, 38, 531, 625, 799, 862
Bst6I CTCTTC 2 cut(s) 739, 944
BstACI GRCGYC 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 482
BstDEI CTNAG 2 cut(s) 945, 967
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 9 cut(s) 136, 148, 217, 304, 877, 895, 956, 1003, 1012
BstMAI GTCTC 1 cut(s) 982
BstMBI GATC 9 cut(s) 133, 145, 214, 301, 874, 892, 953, 1000, 1009
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstUI CGCG 1 cut(s) 317
BstV2I GAAGAC 2 cut(s) 507, 600
BstXI CCANNNNNNTGG 1 cut(s) 306
Bsu15I ATCGAT 1 cut(s) 304
BsuI GTATCC 1 cut(s) 51
BsuTUI ATCGAT 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 630, 795
BtuMI TCGCGA 1 cut(s) 317
CciI TCATGA 2 cut(s) 889, 1026
CfoI GCGC 1 cut(s) 574
ClaI ATCGAT 1 cut(s) 304
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 296
CviAII CATG 6 cut(s) 149, 412, 649, 692, 890, 1027
CviJI RGCY 9 cut(s) 24, 89, 98, 255, 268, 644, 700, 852, 919
CviKI_1 RGCY 9 cut(s) 24, 89, 98, 255, 268, 644, 700, 852, 919
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 2 cut(s) 945, 967
DpnI GATC 9 cut(s) 135, 147, 216, 303, 876, 894, 955, 1002, 1011
DpnII GATC 9 cut(s) 133, 145, 214, 301, 874, 892, 953, 1000, 1009
DraI TTTAAA 1 cut(s) 235
DraIII CACNNNGTG 1 cut(s) 482
DriI GACNNNNNGTC 1 cut(s) 542
Eam1104I CTCTTC 2 cut(s) 739, 944
Eam1105I GACNNNNNGTC 1 cut(s) 542
EarI CTCTTC 2 cut(s) 739, 944
EciI GGCGGA 2 cut(s) 63, 420
Eco72I CACGTG 1 cut(s) 482
FaeI CATG 6 cut(s) 152, 415, 652, 695, 893, 1030
FatI CATG 6 cut(s) 148, 411, 648, 691, 889, 1026
FbaI TGATCA 2 cut(s) 874, 892
Fnu4HI GCNGC 3 cut(s) 46, 434, 570
Fsp4HI GCNGC 3 cut(s) 46, 434, 570
FspBI CTAG 3 cut(s) 252, 641, 723
GlaI GCGC 1 cut(s) 573
GluI GCNGC 3 cut(s) 46, 434, 570
GsuI CTGGAG 2 cut(s) 477, 728
HapII CCGG 3 cut(s) 95, 200, 450
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 574
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 6 cut(s) 152, 415, 652, 695, 893, 1030
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 4 cut(s) 439, 521, 543, 1021
HpaII CCGG 3 cut(s) 95, 200, 450
HphI GGTGA 3 cut(s) 176, 478, 516
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 5 cut(s) 287, 637, 897, 970, 1009
Hpy8I GTNNAC 1 cut(s) 197
Hpy99I CGWCG 3 cut(s) 145, 521, 615
HpyAV CCTTC 2 cut(s) 68, 948
HpyCH4III ACNGT 6 cut(s) 29, 38, 531, 625, 799, 862
HpyCH4IV ACGT 2 cut(s) 481, 1042
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 945, 967
HpySE526I ACGT 2 cut(s) 481, 1042
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 6 cut(s) 152, 415, 652, 695, 893, 1030
HspAI GCGC 1 cut(s) 572
Ksp22I TGATCA 2 cut(s) 874, 892
Kzo9I GATC 9 cut(s) 133, 145, 214, 301, 874, 892, 953, 1000, 1009
LmnI GCTCC 3 cut(s) 103, 433, 712
LpnPI CCDG 9 cut(s) 108, 150, 213, 312, 463, 496, 507, 714, 758
MaeI CTAG 3 cut(s) 252, 641, 723
MaeII ACGT 2 cut(s) 481, 1042
MaeIII GTNAC 5 cut(s) 32, 414, 484, 577, 713
MalI GATC 9 cut(s) 135, 147, 216, 303, 876, 894, 955, 1002, 1011
MboI GATC 9 cut(s) 133, 145, 214, 301, 874, 892, 953, 1000, 1009
MluCI AATT 2 cut(s) 226, 558
MlyI GAGTC 2 cut(s) 515, 552
MmeI TCCRAC 3 cut(s) 615, 794, 978
MnlI CCTC 3 cut(s) 48, 329, 777
MseI TTAA 3 cut(s) 234, 629, 1045
MspI CCGG 3 cut(s) 95, 200, 450
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 9 cut(s) 133, 145, 214, 301, 874, 892, 953, 1000, 1009
NlaIII CATG 6 cut(s) 152, 415, 652, 695, 893, 1030
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 2 cut(s) 414, 484
NruI TCGCGA 1 cut(s) 317
PagI TCATGA 2 cut(s) 889, 1026
PfeI GAWTC 2 cut(s) 439, 1021
PkrI GCNGC 3 cut(s) 47, 435, 571
PleI GAGTC 2 cut(s) 515, 551
PmaCI CACGTG 1 cut(s) 482
PmlI CACGTG 1 cut(s) 482
PpsI GAGTC 2 cut(s) 515, 551
Ppu21I YACGTR 1 cut(s) 482
PspCI CACGTG 1 cut(s) 482
PspN4I GGNNCC 1 cut(s) 99
RruI TCGCGA 1 cut(s) 317
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 234, 629, 1045
SatI GCNGC 3 cut(s) 46, 434, 570
Sau3AI GATC 9 cut(s) 133, 145, 214, 301, 874, 892, 953, 1000, 1009
SchI GAGTC 2 cut(s) 515, 552
Sse9I AATT 2 cut(s) 226, 558
SsiI CCGC 7 cut(s) 45, 48, 367, 431, 434, 453, 569
SspMI CTAG 3 cut(s) 252, 641, 723
TaaI ACNGT 6 cut(s) 29, 38, 531, 625, 799, 862
TaiI ACGT 2 cut(s) 484, 1045
TaqI TCGA 3 cut(s) 15, 72, 304
TasI AATT 2 cut(s) 226, 558
TauI GCSGC 3 cut(s) 48, 436, 572
TfiI GAWTC 2 cut(s) 439, 1021
Tru1I TTAA 3 cut(s) 234, 629, 1045
Tru9I TTAA 3 cut(s) 234, 629, 1045
TscAI CASTG 2 cut(s) 630, 802
TseFI GTSAC 2 cut(s) 414, 484
Tsp45I GTSAC 2 cut(s) 414, 484
TspDTI ATGAA 3 cut(s) 400, 665, 726
TspGWI ACGGA 3 cut(s) 90, 158, 396
TspRI CASTG 2 cut(s) 630, 802
XspI CTAG 3 cut(s) 252, 641, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.