FvH4_2g34260

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
25496619 .. 25498536
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34260.t1

Sequence Viewer

Length: 1161 bp
ATGGCTTTGATGATAGACAACTGCGGCGAAGGCATACTCCTCTCTCTCGACTCCCACAAATCTGTCCCGGCTCCGTTTCTCACCAAAACGTACCAGCTCGTCGACGATCCCGTCACCGACCACATCGTCTCTTGGGGCGAAGACGACACCACCTTCGTCGTCTGGCGTCCTCCGGAGTTCGCCCGCGACCTCCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTATGGTTTCAGAAAGATCGTGCCGGACAGGTGGGAGTTCGCCAACGAGTTTTTCAAGAAAGGTGAGAAGCATTTGCTCTGCGAGATCCACCGCCGCAAGACGGCTCAGCCGACACAGCTCCCCATCAACCACCATCAGTACCACCCGCATTCGCCGCTCGGCAGCCACCACGTCGTCACCGGTCCCGGATTCTTCCCCTTCCCACGTGGCAGCAACTCGCCTTCCGACTCCGACGACTTTCCCAACTGGTGTGACGACTCGCCGCCGCCACTCGTGTCATCTCCACCTTCCGGCTGCGGTGGTGGTCCCCTCAACACTGGCTACTGCAGTAACGTTGCGACCACTACCACCGTGACAGCTCTGTCGGAGGACAACGAGAGGCTGAGGCGGAGCAACACCATGCTGATGTCGGAGCTCAACCATATGAGGAAGCTTTACAACGATATCATCTACTTCGTTCAGAACCATGTCAAGCCTGTCGCTCCCAGCAATTCTTACCCAGGTTCTCTACTTCTCTGCAACCCAACACAAAACACACTCAACCCCAACAACTCATCCGCCGCCATCCACAAGCCTCTCAACCAGGTTTTTGGGTACCACAATAACCCTAAGCAAACCCAACCACATCATCAGCCAATGGCCCATGTCATGATGAACAACAACGTTAACGTCTCGTCTCCGACCACCGCCAAGAGTACTAGCTCGGTGACGATTATCGAAGACCGGCCCGGCAACAACAATGGGTGCAAGACCAAACTGTTTGGGGTTCCACTGCTGCATTCGAAGAAGAGACTGCACCCGGAGTACAACAACGGCTCGAACCACACAGCCATGGAAGCAACTAAAGCTCGCTTGATTTTGGAGAAGGATCATGATTTAGGTCTTCACCTTATGCCCCCATCCACATGTTAG

Protein Analysis

387

Amino Acids

43.21

Weight (kDa)

7.73

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 26 - 115 3.1e-29 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013469)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 110, 125, 610
Acc65I GGTACC 1 cut(s) 843
AccB1I GGYRCC 1 cut(s) 843
AccBSI CCGCTC 1 cut(s) 406
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 172
AclI AACGTT 2 cut(s) 582, 912
AclWI GGATC 3 cut(s) 101, 328, 1125
AcvI CACGTG 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 5 cut(s) 92, 389, 845, 946, 1055
AfiI CCNNNNNNNGG 2 cut(s) 349, 539
AflIII ACRYGT 1 cut(s) 1154
AgeI ACCGGT 1 cut(s) 428
AgsI TTSAA 2 cut(s) 208, 304
AjiI CACGTC 1 cut(s) 421
AjnI CCWGG 2 cut(s) 748, 831
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 9 cut(s) 97, 228, 241, 367, 608, 664, 682, 951, 1097
AluI AGCT 9 cut(s) 97, 228, 241, 367, 608, 664, 682, 951, 1097
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 4 cut(s) 133, 925, 930, 1033
AlwI GGATC 3 cut(s) 101, 328, 1125
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 2 cut(s) 888, 974
ApeKI GCWGC 4 cut(s) 411, 459, 543, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AsiGI ACCGGT 1 cut(s) 428
Asp718I GGTACC 1 cut(s) 843
AspS9I GGNCC 4 cut(s) 431, 554, 889, 975
AsuC2I CCSGG 4 cut(s) 68, 435, 978, 1049
AsuHPI GGTGA 6 cut(s) 73, 106, 323, 418, 967, 1127
AsuII TTCGAA 1 cut(s) 1031
AvaII GGWCC 2 cut(s) 431, 554
BanI GGYRCC 1 cut(s) 843
BanII GRGCYC 1 cut(s) 666
BauI CACGAG 1 cut(s) 521
BbrPI CACGTG 1 cut(s) 455
BbsI GAAGAC 3 cut(s) 147, 975, 1124
Bbv12I GWGCWC 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 4 cut(s) 423, 471, 530, 1011
BccI CCATC 4 cut(s) 380, 390, 821, 1156
BceAI ACGGC 2 cut(s) 366, 1078
BciT130I CCWGG 2 cut(s) 750, 833
BcnI CCSGG 4 cut(s) 68, 435, 978, 1049
BcoDI GTCTC 4 cut(s) 133, 925, 930, 1033
BfaI CTAG 1 cut(s) 948
BfmI CTRYAG 1 cut(s) 574
BlpI GCTNAGC 1 cut(s) 354
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 6 cut(s) 68, 435, 750, 833, 978, 1049
Bme18I GGWCC 2 cut(s) 431, 554
BmgBI CACGTC 1 cut(s) 421
BmgT120I GGNCC 4 cut(s) 431, 554, 889, 975
BmiI GGNNCC 5 cut(s) 72, 433, 556, 845, 1017
BmrFI CCNGG 6 cut(s) 68, 435, 750, 833, 978, 1049
BpiI GAAGAC 3 cut(s) 147, 975, 1124
BpmI CTGGAG 1 cut(s) 208
Bpu10I CCTNAGC 2 cut(s) 632, 858
Bpu1102I GCTNAGC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 1031
BpuMI CCSGG 4 cut(s) 68, 435, 978, 1049
BsaAI YACGTR 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 748, 1080
BsaWI WCCGGW 2 cut(s) 172, 428
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 539
Bse118I RCCGGY 2 cut(s) 428, 972
Bse1I ACTGG 2 cut(s) 500, 571
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 2 cut(s) 750, 833
BseDI CCNNGG 2 cut(s) 748, 1080
BseGI GGATG 3 cut(s) 803, 813, 1148
BseLI CCNNNNNNNGG 2 cut(s) 349, 539
BseMII CTCAG 2 cut(s) 368, 623
BseNI ACTGG 2 cut(s) 500, 571
BseRI GAGGAG 2 cut(s) 29, 182
BseXI GCAGC 4 cut(s) 423, 471, 530, 1011
BseYI CCCAGC 1 cut(s) 734
BsgI GTGCAG 1 cut(s) 1028
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 890, 976
BshNI GGYRCC 1 cut(s) 843
BshTI ACCGGT 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 666
BsiSI CCGG 9 cut(s) 68, 173, 272, 429, 435, 540, 973, 978, 1049
BslFI GGGAC 3 cut(s) 50, 417, 540
BslI CCNNNNNNNGG 2 cut(s) 349, 539
BsmAI GTCTC 4 cut(s) 133, 925, 930, 1033
BsmBI CGTCTC 3 cut(s) 133, 925, 930
BsmFI GGGAC 3 cut(s) 50, 417, 540
BsmI GAATGC 2 cut(s) 397, 1027
BsnI GGCC 2 cut(s) 890, 976
Bsp119I TTCGAA 1 cut(s) 1031
Bsp1286I GDGCHC 1 cut(s) 666
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 4 cut(s) 106, 264, 333, 1117
Bsp1720I GCTNAGC 1 cut(s) 354
Bsp19I CCATGG 1 cut(s) 1080
BspANI GGCC 2 cut(s) 890, 976
BspCNI CTCAG 2 cut(s) 367, 624
BspEI TCCGGA 1 cut(s) 172
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 2 cut(s) 897, 1120
BspLI GGNNCC 5 cut(s) 72, 433, 556, 845, 1017
BspMAI CTGCAG 1 cut(s) 578
BspPI GGATC 3 cut(s) 101, 328, 1125
BspT104I TTCGAA 1 cut(s) 1031
BspT107I GGYRCC 1 cut(s) 843
BsrBI CCGCTC 1 cut(s) 406
BsrFI RCCGGY 2 cut(s) 428, 972
BsrI ACTGG 2 cut(s) 500, 571
BssAI RCCGGY 2 cut(s) 428, 972
BssECI CCNNGG 2 cut(s) 748, 1080
BssMI GATC 4 cut(s) 106, 264, 333, 1117
BssNI GRCGYC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 521
BssT1I CCWWGG 1 cut(s) 1080
Bst2BI CACGAG 1 cut(s) 521
Bst2UI CCWGG 2 cut(s) 750, 833
Bst4CI ACNGT 2 cut(s) 601, 1008
Bst6I CTCTTC 1 cut(s) 1031
BstACI GRCGYC 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 1031
BstC8I GCNNGC 3 cut(s) 184, 239, 1099
BstDEI CTNAG 3 cut(s) 354, 632, 858
BstDSI CCRYGG 1 cut(s) 1080
BstF5I GGATG 3 cut(s) 803, 813, 1148
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 4 cut(s) 109, 267, 336, 1120
BstMAI GTCTC 4 cut(s) 133, 925, 930, 1033
BstMBI GATC 4 cut(s) 106, 264, 333, 1117
BstMWI GCNNNNNNNGC 6 cut(s) 30, 234, 364, 403, 1085, 1094
BstNI CCWGG 2 cut(s) 750, 833
BstNSI RCATGY 1 cut(s) 1158
BstSCI CCNGG 6 cut(s) 66, 433, 748, 831, 976, 1047
BstSFI CTRYAG 1 cut(s) 574
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 4 cut(s) 423, 471, 530, 1011
BstV2I GAAGAC 3 cut(s) 147, 975, 1124
BstX2I RGATCY 1 cut(s) 333
BstXI CCANNNNNNTGG 1 cut(s) 839
BstYI RGATCY 1 cut(s) 333
BsuRI GGCC 2 cut(s) 890, 976
BtgI CCRYGG 1 cut(s) 1080
BtrI CACGTC 1 cut(s) 421
BtsCI GGATG 3 cut(s) 803, 813, 1148
BtsI GCAGTG 1 cut(s) 1019
BtsIMutI CAGTG 2 cut(s) 564, 1019
Cac8I GCNNGC 3 cut(s) 184, 239, 1099
CciI TCATGA 2 cut(s) 897, 1120
Cfr10I RCCGGY 2 cut(s) 428, 972
Cfr13I GGNCC 4 cut(s) 431, 554, 889, 975
CseI GACGC 1 cut(s) 155
CsiI ACCWGGT 1 cut(s) 831
Csp6I GTAC 5 cut(s) 91, 388, 844, 945, 1054
CspAI ACCGGT 1 cut(s) 428
CviAII CATG 7 cut(s) 649, 716, 893, 898, 1081, 1121, 1155
CviQI GTAC 5 cut(s) 91, 388, 844, 945, 1054
DdeI CTNAG 3 cut(s) 354, 632, 858
DpnI GATC 4 cut(s) 108, 266, 335, 1119
DpnII GATC 4 cut(s) 106, 264, 333, 1117
DrdI GACNNNNNNGTC 3 cut(s) 110, 125, 610
DseDI GACNNNNNNGTC 3 cut(s) 110, 125, 610
Eam1104I CTCTTC 1 cut(s) 1031
EarI CTCTTC 1 cut(s) 1031
EciI GGCGGA 3 cut(s) 224, 652, 796
Ecl136II GAGCTC 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 1080
Eco24I GRGCYC 1 cut(s) 666
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 2 cut(s) 431, 554
Eco53kI GAGCTC 1 cut(s) 664
Eco72I CACGTG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 664
EcoRII CCWGG 2 cut(s) 748, 831
EcoRV GATATC 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 1080
EcoT38I GRGCYC 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 1080
Esp3I CGTCTC 3 cut(s) 133, 925, 930
FaeI CATG 7 cut(s) 652, 719, 896, 901, 1084, 1124, 1158
FaqI GGGAC 3 cut(s) 50, 417, 540
FatI CATG 7 cut(s) 648, 715, 892, 897, 1080, 1120, 1154
FauI CCCGC 2 cut(s) 191, 402
FauNDI CATATG 1 cut(s) 672
FblI GTMKAC 1 cut(s) 102
FokI GGATG 3 cut(s) 790, 800, 1135
FriOI GRGCYC 1 cut(s) 666
FspBI CTAG 1 cut(s) 948
GsaI CCCAGC 1 cut(s) 738
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 2 cut(s) 890, 976
HapII CCGG 9 cut(s) 68, 173, 272, 429, 435, 540, 973, 978, 1049
HgaI GACGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 7 cut(s) 652, 719, 896, 901, 1084, 1124, 1158
HincII GTYRAC 2 cut(s) 103, 916
HindII GTYRAC 2 cut(s) 103, 916
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 4 cut(s) 50, 438, 476, 506
HpaI GTTAAC 1 cut(s) 916
HpaII CCGG 9 cut(s) 68, 173, 272, 429, 435, 540, 973, 978, 1049
HphI GGTGA 6 cut(s) 73, 106, 323, 418, 967, 1127
Hpy166II GTNNAC 2 cut(s) 103, 916
Hpy188I TCNGA 7 cut(s) 260, 475, 481, 616, 661, 711, 930
Hpy188III TCNNGA 5 cut(s) 47, 173, 304, 898, 1121
Hpy8I GTNNAC 2 cut(s) 103, 916
Hpy99I CGWCG 5 cut(s) 104, 107, 161, 425, 485
HpyAV CCTTC 6 cut(s) 23, 163, 457, 480, 546, 1108
HpyCH4III ACNGT 2 cut(s) 601, 1008
HpyCH4IV ACGT 6 cut(s) 89, 420, 454, 582, 912, 918
HpyCH4V TGCA 5 cut(s) 576, 768, 996, 1027, 1045
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 234, 364, 403, 1085, 1094
HpyF3I CTNAG 3 cut(s) 354, 632, 858
HpySE526I ACGT 6 cut(s) 89, 420, 454, 582, 912, 918
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 7 cut(s) 652, 719, 896, 901, 1084, 1124, 1158
Kpn2I TCCGGA 1 cut(s) 172
KpnI GGTACC 1 cut(s) 847
KspAI GTTAAC 1 cut(s) 916
Kzo9I GATC 4 cut(s) 106, 264, 333, 1117
LmnI GCTCC 5 cut(s) 76, 372, 639, 661, 736
Lsp1109I GCAGC 4 cut(s) 423, 471, 530, 1011
MabI ACCWGGT 1 cut(s) 831
MaeI CTAG 1 cut(s) 948
MaeII ACGT 6 cut(s) 89, 420, 454, 582, 912, 918
MaeIII GTNAC 6 cut(s) 112, 424, 500, 578, 601, 955
MalI GATC 4 cut(s) 108, 266, 335, 1119
MbiI CCGCTC 1 cut(s) 406
MboI GATC 4 cut(s) 106, 264, 333, 1117
MboII GAAGA 6 cut(s) 152, 433, 980, 1045, 1048, 1124
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 666
MluCI AATT 1 cut(s) 739
MlyI GAGTC 3 cut(s) 44, 470, 500
MmeI TCCRAC 5 cut(s) 498, 504, 594, 639, 953
MroI TCCGGA 1 cut(s) 172
MseI TTAA 1 cut(s) 915
MslI CAYNNNNRTG 3 cut(s) 653, 1079, 1153
MspI CCGG 9 cut(s) 68, 173, 272, 429, 435, 540, 973, 978, 1049
MspR9I CCNGG 6 cut(s) 68, 435, 750, 833, 978, 1049
Mva1269I GAATGC 2 cut(s) 397, 1027
MvaI CCWGG 2 cut(s) 750, 833
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 6 cut(s) 30, 234, 364, 403, 1085, 1094
NciI CCSGG 4 cut(s) 68, 435, 978, 1049
NcoI CCATGG 1 cut(s) 1080
NdeI CATATG 1 cut(s) 672
NdeII GATC 4 cut(s) 106, 264, 333, 1117
NlaIII CATG 7 cut(s) 652, 719, 896, 901, 1084, 1124, 1158
NlaIV GGNNCC 5 cut(s) 72, 433, 556, 845, 1017
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 5 cut(s) 112, 424, 500, 601, 955
NspI RCATGY 1 cut(s) 1158
NspV TTCGAA 1 cut(s) 1031
PagI TCATGA 2 cut(s) 897, 1120
PciI ACATGT 1 cut(s) 1154
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 356
PctI GAATGC 2 cut(s) 397, 1027
PfeI GAWTC 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 428
PleI GAGTC 3 cut(s) 44, 470, 500
PmaCI CACGTG 1 cut(s) 455
PmlI CACGTG 1 cut(s) 455
PpsI GAGTC 3 cut(s) 44, 470, 500
Ppu21I YACGTR 1 cut(s) 455
PscI ACATGT 1 cut(s) 1154
Psp124BI GAGCTC 1 cut(s) 666
Psp1406I AACGTT 2 cut(s) 582, 912
Psp6I CCWGG 2 cut(s) 748, 831
PspCI CACGTG 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 734
PspGI CCWGG 2 cut(s) 748, 831
PspN4I GGNNCC 5 cut(s) 72, 433, 556, 845, 1017
PspPI GGNCC 4 cut(s) 431, 554, 889, 975
PstI CTGCAG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 5 cut(s) 92, 389, 845, 946, 1055
RsaNI GTAC 5 cut(s) 91, 388, 844, 945, 1054
RseI CAYNNNNRTG 3 cut(s) 653, 1079, 1153
SacI GAGCTC 1 cut(s) 666
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 915
Sau3AI GATC 4 cut(s) 106, 264, 333, 1117
Sau96I GGNCC 4 cut(s) 431, 554, 889, 975
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 3 cut(s) 44, 470, 500
ScrFI CCNGG 6 cut(s) 68, 435, 750, 833, 978, 1049
SduI GDGCHC 1 cut(s) 666
SexAI ACCWGGT 1 cut(s) 831
SfcI CTRYAG 1 cut(s) 574
SfuI TTCGAA 1 cut(s) 1031
SgrDI CGTCGACG 1 cut(s) 101
SinI GGWCC 2 cut(s) 431, 554
SmiMI CAYNNNNRTG 3 cut(s) 653, 1079, 1153
Sse9I AATT 1 cut(s) 739
SspMI CTAG 1 cut(s) 948
SstI GAGCTC 1 cut(s) 666
StyD4I CCNGG 6 cut(s) 66, 433, 748, 831, 976, 1047
StyI CCWWGG 1 cut(s) 1080
TaaI ACNGT 2 cut(s) 601, 1008
TaiI ACGT 6 cut(s) 92, 423, 457, 585, 915, 921
TaqI TCGA 5 cut(s) 48, 102, 966, 1031, 1067
TasI AATT 1 cut(s) 739
TatI WGTACW 2 cut(s) 944, 1053
TauI GCSGC 6 cut(s) 27, 345, 406, 514, 517, 812
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 1 cut(s) 915
Tru9I TTAA 1 cut(s) 915
TscAI CASTG 2 cut(s) 571, 1026
TseFI GTSAC 5 cut(s) 112, 424, 500, 601, 955
TseI GCWGC 4 cut(s) 411, 459, 543, 1024
Tsp45I GTSAC 5 cut(s) 112, 424, 500, 601, 955
TspDTI ATGAA 1 cut(s) 917
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 2 cut(s) 571, 1026
VpaK11BI GGWCC 2 cut(s) 431, 554
XceI RCATGY 1 cut(s) 1158
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 948
ZrmI AGTACT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.