Rorug06G0364300

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013469
Physical Location & Seq
Reverse (-)
51181978 .. 51185376
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0364300.1

Sequence Viewer

Length: 1323 bp
ATGGGGGATTGCTGGAGGTTCTTTAGGGTGTCTGGACTACGACCACCTCAAATTTCAAATGAGTACTTCACCATGGAGATACACCATGGAGGTTATTTCGACAAGATGCCCGATGGGACAAAGAAGTATAAAATAGCTAAGTTCAATAAGTTGGGTGGAGTCTTGTATTATGATGGATTGGATCCTGAGAAGCTTACATGGGTAGAGCTCGACAACATTGCATGGGAATTAGGATACAGAGAGAAACCAATATCCTATTGCTACAAGCTGCCGGGGACATTAAGCTGTGAGGGATGGATTCCTGTGAAGAATGATGCCGATGCTGCAGAGATGACAAAGCAAATATCAAATAAGAAAAGACAAATCAGCTTGTATATCACTGGCGGTGGCAGAAGGAAGAAAAAGGAGGCTGAGTTGGATGATGTAGTGCCAAGGCCTTCTAATTGGCATAATCCTTTGAATAATGTGCTGCCAGCAGAGAAAATAAATATTGATGTGTCTGCTAATTTGGTGGCTAGCCAAATAAATAGGTTATACATGGAAAAGGTTGTAGGGGTTGGTGTAAGAAGTAGTGTAAATGGCAGGAGGGATGATTTGATAATTAATGACAATGGTGTAAATGAGGGTGTGCTTGGTGAAGGGTTGAATGTAGTAAAGAATGATAGTGAGGTGGGTAGAGATTTGTCTGAAGTAGTAAATGAAGGTAGTGTGGTGGAGAATGCAGTCAAAGTTGGAAATGAAGATGAAGAAGGGCATGAAGGTAACTTAAATACATTTAATGTTGCTGTGAGAAGGCCTACATTCAAAAAGAGTGCAACCAGACAAGAAAAAGGCAAAGCTGCAATCATTGAAGCACCATTGGAGGCTAGTGGATTTAAGAAGAAAGGTAGACAAGTTAAGGGTTCAAAGTATAAAACAAGAAACGAAGGAAAAAAGAAGTATGACAAGGTAGATTCTGATTATGGTAGTGGGGGTTCAGATTTTTTTATCGATAGTGATTATGAGCAAGACCAAAAAGATGATGATGTTGATTTTGAAGAGAATGTTGCAAACCCAGAAAGAGTGGAGGAGTATGATGAGATGGGCTACAATGGTTTGTGTTCTGATGATGAAAGAGAATCCCATGTGTTCATGCTATATGTGCAATTTTTAAGAAGAAAGAGAATCCTGCATTATATGTTGACGAATTCCTTCACCCATAAAAGTATTTGGATTCCTACAATCCAATCATTTTTCCCATTGCTGGTGATGATGACTGGGAGCAAGTTGATTATCCAATTGCTCCTCCACTTTATAGGAGGCAAGCAGGTCGACCTAAGATGA

Protein Analysis

440

Amino Acids

49.96

Weight (kDa)

6.15

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 21 - 127 2.3e-12 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46264
fragaria_vesca FvH4_2g34260
malus_domestica MD08G1098200.v1.1 MD15G1080700.v1.1
prunus_persica Prupe.1G433500_v2.0.a1
pyrus_communis pycom08g08000 pycom15g07520
rosa_chinensis RchiOBHm_Chr6g0308161
rosa_laevigata RLG00000010664
rosa_multiflora Rmu_sc0005706.1_g000009
rosa_roxburghii Rroxscaffold_7G00160400 Rroxscaffold_7G00160490
rosa_rugosa Rorug06G0364300
rosa_samantha Rh6AG473500 Rh6BG484300 Rh6CG489300 Rh6DG475500
rosa_wichuraiana Rw6G041280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1297
AccI GTMKAC 2 cut(s) 889, 1311
AciI CCGC 1 cut(s) 384
AclWI GGATC 2 cut(s) 176, 189
AcsI RAATTY 2 cut(s) 51, 1186
AcuI CTGAAG 1 cut(s) 708
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 1243
AgsI TTSAA 8 cut(s) 57, 145, 460, 646, 805, 851, 906, 1037
AluBI AGCT 7 cut(s) 137, 193, 208, 268, 285, 369, 839
AluI AGCT 7 cut(s) 137, 193, 208, 268, 285, 369, 839
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 2 cut(s) 176, 189
AoxI GGCC 2 cut(s) 434, 794
ApeKI GCWGC 4 cut(s) 268, 323, 469, 839
ApoI RAATTY 2 cut(s) 51, 1186
AseI ATTAAT 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 1190
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 4 cut(s) 61, 647, 1186, 1258
AsuNHI GCTAGC 1 cut(s) 515
BamHI GGATCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 4 cut(s) 255, 310, 456, 826
BccI CCATC 4 cut(s) 107, 167, 288, 1075
BcgI CGANNNNNNTGC 3 cut(s) 200, 234, 1291
BciVI GTATCC 1 cut(s) 227
BcnI CCSGG 1 cut(s) 273
BfaI CTAG 2 cut(s) 516, 867
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 1297
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 4 cut(s) 269, 324, 470, 840
BlsI GCNGC 4 cut(s) 270, 325, 471, 841
BmcAI AGTACT 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 273
BmrI ACTGGG 1 cut(s) 1266
BmsI GCATC 3 cut(s) 96, 304, 310
BmtI GCTAGC 1 cut(s) 519
BmuI ACTGGG 1 cut(s) 1266
BpmI CTGGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 990
BsaJI CCNNGG 4 cut(s) 72, 85, 272, 431
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 1243
Bse1I ACTGG 2 cut(s) 385, 1261
Bse3DI GCAATG 2 cut(s) 216, 1238
BseCI ATCGAT 1 cut(s) 990
BseDI CCNNGG 4 cut(s) 72, 85, 272, 431
BseGI GGATG 3 cut(s) 299, 424, 595
BseLI CCNNNNNNNGG 1 cut(s) 1243
BseMI GCAATG 2 cut(s) 216, 1238
BseMII CTCAG 2 cut(s) 177, 402
BseNI ACTGG 2 cut(s) 385, 1261
BseRI GAGGAG 2 cut(s) 1082, 1274
BseXI GCAGC 4 cut(s) 255, 310, 456, 826
BshFI GGCC 2 cut(s) 436, 796
BshVI ATCGAT 1 cut(s) 990
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 2 cut(s) 130, 289
BslI CCNNNNNNNGG 1 cut(s) 1243
BsmFI GGGAC 2 cut(s) 130, 289
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 2 cut(s) 436, 796
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 181
Bsp19I CCATGG 2 cut(s) 72, 85
BspACI CCGC 1 cut(s) 384
BspANI GGCC 2 cut(s) 436, 796
BspCNI CTCAG 2 cut(s) 178, 403
BspDI ATCGAT 1 cut(s) 990
BspLI GGNNCC 1 cut(s) 183
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 1297
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 2 cut(s) 176, 189
BsrDI GCAATG 2 cut(s) 216, 1238
BsrI ACTGG 2 cut(s) 385, 1261
BssECI CCNNGG 4 cut(s) 72, 85, 272, 431
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 3 cut(s) 72, 85, 431
Bst6I CTCTTC 1 cut(s) 1032
BstC8I GCNNGC 3 cut(s) 474, 517, 1304
BstDEI CTNAG 4 cut(s) 138, 186, 411, 1316
BstDSI CCRYGG 2 cut(s) 72, 85
BstF5I GGATG 3 cut(s) 299, 424, 595
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 323, 1141
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 255, 310, 456, 826
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 990
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 2 cut(s) 436, 796
BsuTUI ATCGAT 1 cut(s) 990
BtgI CCRYGG 2 cut(s) 72, 85
BtsCI GGATG 3 cut(s) 299, 424, 595
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 1297
Cac8I GCNNGC 3 cut(s) 474, 517, 1304
ClaI ATCGAT 1 cut(s) 990
Csp6I GTAC 1 cut(s) 64
CviAII CATG 8 cut(s) 73, 86, 198, 222, 538, 755, 1124, 1132
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 4 cut(s) 138, 186, 411, 1316
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 1032
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 3 cut(s) 72, 85, 431
Eco147I AGGCCT 2 cut(s) 436, 796
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 708
EcoICRI GAGCTC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 1186
EcoT14I CCWWGG 3 cut(s) 72, 85, 431
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 3 cut(s) 72, 85, 431
FaeI CATG 8 cut(s) 76, 89, 201, 225, 541, 758, 1127, 1135
FaqI GGGAC 2 cut(s) 130, 289
FatI CATG 8 cut(s) 72, 85, 197, 221, 537, 754, 1123, 1131
FblI GTMKAC 2 cut(s) 889, 1311
Fnu4HI GCNGC 4 cut(s) 269, 324, 470, 840
FokI GGATG 3 cut(s) 306, 431, 602
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 4 cut(s) 269, 324, 470, 840
FspBI CTAG 2 cut(s) 516, 867
GluI GCNGC 4 cut(s) 269, 324, 470, 840
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 2 cut(s) 436, 796
HapII CCGG 1 cut(s) 272
Hin1II CATG 8 cut(s) 76, 89, 201, 225, 541, 758, 1127, 1135
HincII GTYRAC 2 cut(s) 1182, 1312
HindII GTYRAC 2 cut(s) 1182, 1312
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 6 cut(s) 159, 298, 953, 1118, 1164, 1213
HpaII CCGG 1 cut(s) 272
HphI GGTGA 4 cut(s) 61, 647, 1186, 1258
Hpy166II GTNNAC 3 cut(s) 890, 1182, 1312
Hpy188I TCNGA 4 cut(s) 688, 958, 979, 1105
Hpy188III TCNNGA 2 cut(s) 33, 185
Hpy8I GTNNAC 3 cut(s) 890, 1182, 1312
HpyAV CCTTC 9 cut(s) 387, 447, 632, 695, 743, 752, 786, 920, 1201
HpyCH4V TGCA 8 cut(s) 221, 326, 722, 815, 842, 1049, 1144, 1171
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 1141
HpyF3I CTNAG 4 cut(s) 138, 186, 411, 1316
Hsp92II CATG 8 cut(s) 76, 89, 201, 225, 541, 758, 1127, 1135
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 1260, 1287
Lsp1109I GCAGC 4 cut(s) 255, 310, 456, 826
LweI GCATC 3 cut(s) 96, 304, 310
MaeI CTAG 2 cut(s) 516, 867
MaeIII GTNAC 1 cut(s) 761
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 7 cut(s) 319, 409, 752, 758, 892, 1049, 1167
MfeI CAATTG 1 cut(s) 1277
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 8 cut(s) 51, 227, 442, 505, 600, 1145, 1186, 1277
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 2 cut(s) 396, 712
MroXI GAANNNNTTC 1 cut(s) 1190
MseI TTAA 7 cut(s) 281, 603, 767, 777, 876, 897, 1151
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 1277
Mva1269I GAATGC 1 cut(s) 724
MwoI GCNNNNNNNGC 2 cut(s) 323, 1141
NciI CCSGG 1 cut(s) 273
NcoI CCATGG 2 cut(s) 72, 85
NdeII GATC 1 cut(s) 181
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 8 cut(s) 76, 89, 201, 225, 541, 758, 1127, 1135
NlaIV GGNNCC 1 cut(s) 183
PceI AGGCCT 2 cut(s) 436, 796
PctI GAATGC 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 1190
PfeI GAWTC 5 cut(s) 298, 953, 1118, 1164, 1213
PkrI GCNGC 4 cut(s) 270, 325, 471, 841
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 183
PsrI GAACNNNNNNTAC 2 cut(s) 958, 990
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 210
SalI GTCGAC 1 cut(s) 1310
SaqAI TTAA 7 cut(s) 281, 603, 767, 777, 876, 897, 1151
SatI GCNGC 4 cut(s) 269, 324, 470, 840
Sau3AI GATC 1 cut(s) 181
ScaI AGTACT 1 cut(s) 65
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 3 cut(s) 96, 304, 310
SfcI CTRYAG 1 cut(s) 324
Sse9I AATT 8 cut(s) 51, 227, 442, 505, 600, 1145, 1186, 1277
SseBI AGGCCT 2 cut(s) 436, 796
SsiI CCGC 1 cut(s) 384
SspI AATATT 1 cut(s) 490
SspMI CTAG 2 cut(s) 516, 867
SstI GAGCTC 1 cut(s) 210
StuI AGGCCT 2 cut(s) 436, 796
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 3 cut(s) 72, 85, 431
TaqI TCGA 4 cut(s) 99, 210, 990, 1311
TasI AATT 8 cut(s) 51, 227, 442, 505, 600, 1145, 1186, 1277
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 5 cut(s) 298, 953, 1118, 1164, 1213
Tru1I TTAA 7 cut(s) 281, 603, 767, 777, 876, 897, 1151
Tru9I TTAA 7 cut(s) 281, 603, 767, 777, 876, 897, 1151
TscAI CASTG 1 cut(s) 385
TseI GCWGC 4 cut(s) 268, 323, 469, 839
TspDTI ATGAA 6 cut(s) 714, 753, 759, 771, 1120, 1125
TspRI CASTG 1 cut(s) 385
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 2 cut(s) 51, 1186
XmiI GTMKAC 2 cut(s) 889, 1311
XmnI GAANNNNTTC 1 cut(s) 1190
XspI CTAG 2 cut(s) 516, 867
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.