Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015475

Physical Location & Seq

Genomic Coordinates Reverse (-)

17569256 .. 17570249

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTACGAAAGCTCCAGAGAAAATCACCAAACCAAAAGACAGAGATTTCCTAAATCATCTCGAAACATATCTCTCCAAAAGAGATGGTGTAGACAAACTCCTGAAAATCTCTCGTTACGCAACAAAAATCATCCTCGCATCATCACTAATCCCAGAAACCAGATCCATAATCCCCCGACTCAAAAGCTTCGAATCAAGCGTCGGAGTCAGTCGCAAAGCCTTCCGTCTCGGAAAATTCGTACAAGACATCAACGCATTAAGATCCTCACGATGGGATTCAAATCACGAGCTCGTCTTACTCATAATCGCGTACGGTGGTGAAGGATTATACTATTTCGTTGAACAATTCATATGGTTAACGAAATCAGGACTGATCGATGCGAAACATTCGAAATGGCTTCAGAAGATTAGTGCTTGGGCTGAATTGGTTGGTTATGTAGGAAGTGTTTCGATTAAGATTAGGGATTTGAGGAAATTGAATGATGAAGAGAGTTGTGTTGCTTCGACGATCGAGATCTCGGTTTCGAGAGGATTAGCTTGTGATGGTGAAGATGAGAAGATGAAGATGATTAAGGAGAAGAAGACATTGAAGGTTTTATCTATTTTGCAGGATCTTGCTGATGGTTTGATGACGATTGCTGATATTCGTGATGGTAAGGGAGTGTTATCGGCTCCTAATGTGATATCTTCTGCAGGTTTGTTTTCTGCTATTGTTAGTACTCATAAGAACTGGATCTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEX11

Protein Analysis

248

Amino Acids

27.68

Weight (kDa)

9.37

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	18 - 245	2.6e-49	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47750
fragaria_vesca	FvH4_2g40140
malus_domestica	MD02G1189800.v1.1 MD08G1032200.v1.1 MD15G1028900.v1.1
prunus_persica	Prupe.1G382600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0300611
rosa_laevigata	RLG00000011319
rosa_multiflora	Rmu_co8435417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167590
rosa_rugosa	Rorug06G0298100
rosa_samantha	Rh6AG410500 Rh6BG417600 Rh6CG425200 Rh6DG410700
rosa_wichuraiana	Rw6G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	311
AclWI	GGATC	4 cut(s)	159, 258, 621, 743
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	243, 314, 721
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	4 cut(s)	282, 344, 481, 592
AluBI	AGCT	4 cut(s)	14, 189, 292, 539
AluI	AGCT	4 cut(s)	14, 189, 292, 539
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	4 cut(s)	159, 258, 621, 743
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp700I	GAANNNNTTC	1 cut(s)	448
AsuHPI	GGTGA	3 cut(s)	19, 332, 560
AsuII	TTCGAA	2 cut(s)	192, 392
BanII	GRGCYC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	5 cut(s)	80, 267, 539, 617, 647
BcoDI	GTCTC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	693
BfuAI	ACCTGC	1 cut(s)	686
BglII	AGATCT	1 cut(s)	516
BmcAI	AGTACT	1 cut(s)	721
BmiI	GGNNCC	1 cut(s)	675
BmsI	GCATC	2 cut(s)	149, 370
BpiI	GAAGAC	1 cut(s)	590
Bpu14I	TTCGAA	2 cut(s)	192, 392
Bsa29I	ATCGAT	1 cut(s)	378
BsaBI	GATNNNNATC	2 cut(s)	282, 515
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	737
Bse8I	GATNNNNATC	2 cut(s)	282, 515
BseCI	ATCGAT	1 cut(s)	378
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	2 cut(s)	282, 515
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	737
Bsh1236I	CGCG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	513
BshVI	ATCGAT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	294
BsiWI	CGTACG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
Bsp119I	TTCGAA	2 cut(s)	192, 392
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	7 cut(s)	164, 263, 375, 510, 516, 613, 735
BspDI	ATCGAT	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	675
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	686
BspPI	GGATC	4 cut(s)	159, 258, 621, 743
BspT104I	TTCGAA	2 cut(s)	192, 392
BsrI	ACTGG	1 cut(s)	737
BssMI	GATC	7 cut(s)	164, 263, 375, 510, 516, 613, 735
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	483
BstBI	TTCGAA	2 cut(s)	192, 392
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	7 cut(s)	167, 266, 378, 513, 519, 616, 738
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	7 cut(s)	164, 263, 375, 510, 516, 613, 735
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	5 cut(s)	164, 263, 516, 613, 735
BstYI	RGATCY	5 cut(s)	164, 263, 516, 613, 735
Bsu15I	ATCGAT	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	686
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	242, 313, 720
CviJI	RGCY	9 cut(s)	5, 14, 189, 221, 292, 400, 422, 539, 674
CviKI_1	RGCY	9 cut(s)	5, 14, 189, 221, 292, 400, 422, 539, 674
CviQI	GTAC	3 cut(s)	242, 313, 720
DpnI	GATC	7 cut(s)	166, 265, 377, 512, 518, 615, 737
DpnII	GATC	7 cut(s)	164, 263, 375, 510, 516, 613, 735
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	687
EcoT38I	GRGCYC	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	233
FaiI	YATR	8 cut(s)	70, 170, 305, 331, 353, 355, 438, 726
FauNDI	CATATG	1 cut(s)	353
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	294
HgaI	GACGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	4 cut(s)	180, 194, 207, 278
HpaI	GTTAAC	1 cut(s)	360
HphI	GGTGA	3 cut(s)	19, 332, 560
Hpy166II	GTNNAC	2 cut(s)	94, 360
Hpy188I	TCNGA	3 cut(s)	206, 233, 405
Hpy188III	TCNNGA	9 cut(s)	17, 62, 103, 270, 287, 369, 514, 528, 650
Hpy8I	GTNNAC	2 cut(s)	94, 360
Hpy99I	CGWCG	2 cut(s)	206, 511
HpyAV	CCTTC	3 cut(s)	232, 317, 586
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	610, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	7 cut(s)	164, 263, 375, 510, 516, 613, 735
LmnI	GCTCC	2 cut(s)	19, 679
LpnPI	CCDG	8 cut(s)	30, 116, 168, 175, 354, 596, 681, 718
LweI	GCATC	2 cut(s)	149, 370
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	7 cut(s)	166, 265, 377, 512, 518, 615, 737
MboI	GATC	7 cut(s)	164, 263, 375, 510, 516, 613, 735
MboII	GAAGA	8 cut(s)	418, 500, 563, 571, 577, 592, 595, 681
MflI	RGATCY	5 cut(s)	164, 263, 516, 613, 735
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	4 cut(s)	236, 347, 425, 476
MlyI	GAGTC	2 cut(s)	174, 216
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	4 cut(s)	146, 277, 465, 524
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	4 cut(s)	260, 359, 456, 573
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	7 cut(s)	164, 263, 375, 510, 516, 613, 735
NlaIV	GGNNCC	1 cut(s)	675
NspV	TTCGAA	2 cut(s)	192, 392
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 237
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	194, 278
Pfl23II	CGTACG	1 cut(s)	312
Ple19I	CGATCG	1 cut(s)	513
PleI	GAGTC	2 cut(s)	174, 215
PpsI	GAGTC	2 cut(s)	174, 215
Psp124BI	GAGCTC	1 cut(s)	294
PspLI	CGTACG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	675
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	5 cut(s)	164, 263, 516, 613, 735
PvuI	CGATCG	1 cut(s)	513
RsaI	GTAC	3 cut(s)	243, 314, 721
RsaNI	GTAC	3 cut(s)	242, 313, 720
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	4 cut(s)	260, 359, 456, 573
Sau3AI	GATC	7 cut(s)	164, 263, 375, 510, 516, 613, 735
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	2 cut(s)	174, 216
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	6 cut(s)	16, 191, 294, 541, 597, 700
SfaNI	GCATC	2 cut(s)	149, 370
SfcI	CTRYAG	1 cut(s)	693
SfuI	TTCGAA	2 cut(s)	192, 392
Sse9I	AATT	4 cut(s)	236, 347, 425, 476
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	8 cut(s)	63, 192, 378, 392, 452, 506, 513, 527
TasI	AATT	4 cut(s)	236, 347, 425, 476
TatI	WGTACW	1 cut(s)	719
TfiI	GAWTC	2 cut(s)	194, 278
Tru1I	TTAA	4 cut(s)	260, 359, 456, 573
Tru9I	TTAA	4 cut(s)	260, 359, 456, 573
TspDTI	ATGAA	3 cut(s)	340, 501, 578
TspGWI	ACGGA	1 cut(s)	215
XapI	RAATTY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	448
ZrmI	AGTACT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.