Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0015475

Physical Location & Seq

Genomic Coordinates Reverse (-)

17461940 .. 17462326

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1189800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGACTCGAAACCTTCAACAACCACCGCTCCTCTACTGAACCAGAAAAACCCTAACAATCCTCCATCGAAGCTGAAGCCAAGGGACTTCCTGAATCACCTCGAAGCCTACCTCGCGAAGCAAGATGGCGTTGACAAGCTCATCAAGATATCTCGGTACGTCACCAAGATCGTTTTCGCCTCCCCCGCCCTTCCGGAAACCCTGCCCCTAACACAGCGGCTCAAGAGCTTCGAGTCGAGTGTCAGCGTTAGTCGCAAGGCCTTCCGGTTAGGTAAGTTCGTCCAGAACGTCAACGCTCTGAGGAGCTCGAACTTCGATTCGAATCAGGAGCGCGTACTCACAGTAATCGCCTACGGCGGCGAGGGACTGTATCTTTTCATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEX11

Protein Analysis

129

Amino Acids

14.33

Weight (kDa)

9.82

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	31 - 128	9.4e-19	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47750
fragaria_vesca	FvH4_2g40140
malus_domestica	MD02G1189800.v1.1 MD08G1032200.v1.1 MD15G1028900.v1.1
prunus_persica	Prupe.1G382600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0300611
rosa_laevigata	RLG00000011319
rosa_multiflora	Rmu_co8435417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167590
rosa_rugosa	Rorug06G0298100
rosa_samantha	Rh6AG410500 Rh6BG417600 Rh6CG425200 Rh6DG410700
rosa_wichuraiana	Rw6G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	2 cut(s)	116, 333
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	27, 186, 217, 357
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	158, 336
AgsI	TTSAA	2 cut(s)	18, 383
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	4 cut(s)	73, 139, 228, 306
AluI	AGCT	4 cut(s)	73, 139, 228, 306
Alw21I	GWGCWC	1 cut(s)	308
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	89, 154
AsuII	TTCGAA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	308
BccI	CCATC	2 cut(s)	73, 119
BceAI	ACGGC	1 cut(s)	370
BisI	GCNGC	2 cut(s)	218, 358
BlsI	GCNGC	2 cut(s)	219, 359
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	2 cut(s)	193, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bse8I	GATNNNNATC	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	80
BseJI	GATNNNNATC	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	21, 316
Bsh1236I	CGCG	2 cut(s)	116, 333
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	194, 265
BslFI	GGGAC	2 cut(s)	98, 378
BsmFI	GGGAC	2 cut(s)	98, 378
BsnI	GGCC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	168
Bsp68I	TCGCGA	1 cut(s)	116
BspACI	CCGC	4 cut(s)	27, 186, 217, 357
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	291
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	116, 333
BspT104I	TTCGAA	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	343, 369
BstBI	TTCGAA	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	299
BstFNI	CGCG	2 cut(s)	116, 333
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 185, 252
BstUI	CGCG	2 cut(s)	116, 333
BsuRI	GGCC	1 cut(s)	260
BtuMI	TCGCGA	1 cut(s)	116
CfoI	GCGC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	157, 335
CviJI	RGCY	8 cut(s)	73, 79, 107, 139, 220, 228, 260, 306
CviKI_1	RGCY	8 cut(s)	73, 79, 107, 139, 220, 228, 260, 306
CviQI	GTAC	2 cut(s)	157, 335
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	306
EcoRV	GATATC	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	80
FaqI	GGGAC	2 cut(s)	98, 378
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	218, 358
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	218, 358
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	218, 358
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	2 cut(s)	194, 265
HhaI	GCGC	1 cut(s)	333
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	2 cut(s)	133, 292
HindII	GTYRAC	2 cut(s)	133, 292
HinfI	GANTC	5 cut(s)	5, 94, 233, 317, 322
HpaII	CCGG	2 cut(s)	194, 265
HphI	GGTGA	2 cut(s)	89, 154
Hpy166II	GTNNAC	2 cut(s)	133, 292
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	7 cut(s)	91, 115, 145, 194, 223, 283, 326
Hpy8I	GTNNAC	2 cut(s)	133, 292
HpyAV	CCTTC	3 cut(s)	24, 200, 271
HpyCH4III	ACNGT	2 cut(s)	343, 369
HpyCH4IV	ACGT	2 cut(s)	159, 288
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 185, 252
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	2 cut(s)	159, 288
HspAI	GCGC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	34, 303, 328
LpnPI	CCDG	7 cut(s)	56, 104, 207, 215, 278, 296, 311
MaeII	ACGT	2 cut(s)	159, 288
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	170
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	7 cut(s)	42, 72, 110, 122, 190, 294, 355
MroI	TCCGGA	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	2 cut(s)	194, 265
MvnI	CGCG	2 cut(s)	116, 333
MwoI	GCNNNNNNNGC	3 cut(s)	113, 185, 252
NdeII	GATC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	94, 317, 322
PkrI	GCNGC	2 cut(s)	219, 359
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	308
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	2 cut(s)	158, 336
RsaNI	GTAC	2 cut(s)	157, 335
SacI	GAGCTC	1 cut(s)	308
SatI	GCNGC	2 cut(s)	218, 358
Sau3AI	GATC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	4 cut(s)	27, 186, 217, 357
SstI	GAGCTC	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	343, 369
TaiI	ACGT	2 cut(s)	162, 291
TaqI	TCGA	8 cut(s)	8, 68, 102, 231, 236, 308, 315, 320
TauI	GCSGC	2 cut(s)	220, 360
TfiI	GAWTC	3 cut(s)	94, 317, 322
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.