Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015475

Physical Location & Seq

Genomic Coordinates Reverse (-)

28668441 .. 28670512

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAATCAGAAGCTTCATCACCCGCAGCTCCCTTGCTAAAAAAGGAAACCCCAATAATCCAATCGAACCCGAAGAAGAAAGACTTCCTGAACCACCTCGAAGCCTACCTAGCAAAGCGAGATGGAGTCGACAAGCTTCTCAAAATATCCAGATACGCCACCAAGATCATTCTCGCCTCGTCGGCGCTCCCCGAAACCCTAACCCTAAACCACCGCCTCAAGAGTTTCGAGTCGAGCGTGGGCGTCAGTCGCAAGGCCTTCCGGCTCGGCAAGTTCGTCCAAGACGTCAACGCCCTCAGAGCCTCTCATTTCGATTCCGCCGAAGAACTCGCCCTCTCGCTCGTGGCCTACGGCGGCGAGGGAGTCTACTTCTTCGTCGAGCAGTTTGTCTGGCTCGTCAAGTCGGGATTGATTGATAAGAGGCACGCGCGGAGGTTGGGGCTGATCAGCGCGTGGGCCGAGTTCGTCGGGTACGTGGGGAGTGTTTCGCTGAAGATTAGGGATTTGAGGCGGATTGCGGAGGACGAGAAGCGCGTGAAGATGAGCATCGAGGTTGCGATTACGAGGGGGATTAAGTGTGAGGAGGAGAAGGAGAGGCTGGGGAAGCTGATCGAGAAGAAGCTGATGAAGCGGCTTTCGGTTGTTCAGGATTCGGCTGATGCGTTGATGGCCTTGGCTGATATTCGTGACGGAAAAGGGCATTTTTTGGGGCCGCTTTCTGTGTCGATCGCAGGGCTATTATCGGCATTGATCAGCACTCATAAGAATTGGGTGTCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEX11

Protein Analysis

261

Amino Acids

28.88

Weight (kDa)

9.59

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	30 - 257	6e-44	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47750
fragaria_vesca	FvH4_2g40140
malus_domestica	MD02G1189800.v1.1 MD08G1032200.v1.1 MD15G1028900.v1.1
prunus_persica	Prupe.1G382600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0300611
rosa_laevigata	RLG00000011319
rosa_multiflora	Rmu_co8435417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167590
rosa_rugosa	Rorug06G0298100
rosa_samantha	Rh6AG410500 Rh6BG417600 Rh6CG425200 Rh6DG410700
rosa_wichuraiana	Rw6G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccI	GTMKAC	2 cut(s)	129, 366
AccII	CGCG	4 cut(s)	428, 430, 452, 534
AciI	CCGC	9 cut(s)	24, 214, 318, 354, 430, 511, 518, 631, 713
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	2 cut(s)	243, 285
AfaI	GTAC	1 cut(s)	473
AluBI	AGCT	5 cut(s)	14, 29, 136, 607, 622
AluI	AGCT	5 cut(s)	14, 29, 136, 607, 622
AoxI	GGCC	5 cut(s)	255, 345, 456, 669, 710
ApeKI	GCWGC	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	4 cut(s)	187, 430, 452, 534
AspS9I	GGNCC	2 cut(s)	456, 710
AsuHPI	GGTGA	1 cut(s)	12
BauI	CACGAG	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	116, 661
BceAI	ACGGC	1 cut(s)	367
BclI	TGATCA	2 cut(s)	444, 750
BfaI	CTAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	4 cut(s)	27, 355, 632, 713
BlsI	GCNGC	4 cut(s)	28, 356, 633, 714
BmgT120I	GGNCC	2 cut(s)	456, 710
BmiI	GGNNCC	1 cut(s)	711
BmsI	GCATC	2 cut(s)	555, 649
BpuEI	CTTGAG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	475
BsaBI	GATNNNNATC	1 cut(s)	545
BsaHI	GRCGYC	2 cut(s)	243, 285
BsaJI	CCNNGG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	545
BseDI	CCNNGG	1 cut(s)	672
BseJI	GATNNNNATC	1 cut(s)	545
BseMII	CTCAG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	596, 599
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	598
Bsh1236I	CGCG	4 cut(s)	428, 430, 452, 534
Bsh1285I	CGRYCG	1 cut(s)	729
BshFI	GGCC	5 cut(s)	257, 347, 458, 671, 712
BsiEI	CGRYCG	1 cut(s)	729
BsiSI	CCGG	1 cut(s)	262
BsnI	GGCC	5 cut(s)	257, 347, 458, 671, 712
Bsp143I	GATC	5 cut(s)	165, 444, 609, 726, 750
BspACI	CCGC	9 cut(s)	24, 214, 318, 354, 430, 511, 518, 631, 713
BspANI	GGCC	5 cut(s)	257, 347, 458, 671, 712
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	4 cut(s)	428, 430, 452, 534
BspLI	GGNNCC	1 cut(s)	711
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	5 cut(s)	165, 444, 609, 726, 750
BssNI	GRCGYC	2 cut(s)	243, 285
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	672
Bst2BI	CACGAG	1 cut(s)	341
BstACI	GRCGYC	2 cut(s)	243, 285
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	1 cut(s)	296
BstFNI	CGCG	4 cut(s)	428, 430, 452, 534
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	4 cut(s)	187, 430, 452, 534
BstKTI	GATC	5 cut(s)	168, 447, 612, 729, 753
BstMBI	GATC	5 cut(s)	165, 444, 609, 726, 750
BstMCI	CGRYCG	1 cut(s)	729
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 182, 249, 299, 604, 628, 668
BstUI	CGCG	4 cut(s)	428, 430, 452, 534
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	5 cut(s)	257, 347, 458, 671, 712
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	4 cut(s)	187, 430, 452, 534
Cfr13I	GGNCC	2 cut(s)	456, 710
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	472
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	5 cut(s)	167, 446, 611, 728, 752
DpnII	GATC	5 cut(s)	165, 444, 609, 726, 750
EciI	GGCGGA	2 cut(s)	307, 526
Eco130I	CCWWGG	1 cut(s)	672
Eco147I	AGGCCT	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	672
FaiI	YATR	1 cut(s)	762
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FauI	CCCGC	1 cut(s)	31
FbaI	TGATCA	2 cut(s)	444, 750
FblI	GTMKAC	2 cut(s)	129, 366
Fnu4HI	GCNGC	4 cut(s)	27, 355, 632, 713
Fsp4HI	GCNGC	4 cut(s)	27, 355, 632, 713
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	4 cut(s)	186, 429, 451, 533
GluI	GCNGC	4 cut(s)	27, 355, 632, 713
GsaI	CCCAGC	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	5 cut(s)	257, 347, 458, 671, 712
HapII	CCGG	1 cut(s)	262
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	4 cut(s)	187, 430, 452, 534
Hin1I	GRCGYC	2 cut(s)	243, 285
Hin6I	GCGC	4 cut(s)	185, 428, 450, 532
HinP1I	GCGC	4 cut(s)	185, 428, 450, 532
HincII	GTYRAC	2 cut(s)	130, 289
HindII	GTYRAC	2 cut(s)	130, 289
HindIII	AAGCTT	2 cut(s)	12, 134
HinfI	GANTC	6 cut(s)	5, 126, 230, 314, 363, 650
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	3 cut(s)	130, 289, 367
Hpy188I	TCNGA	2 cut(s)	10, 299
Hpy188III	TCNNGA	7 cut(s)	88, 150, 220, 405, 613, 647, 686
Hpy8I	GTNNAC	3 cut(s)	130, 289, 367
Hpy99I	CGWCG	3 cut(s)	184, 380, 470
HpyAV	CCTTC	2 cut(s)	268, 583
HpyCH4IV	ACGT	2 cut(s)	285, 474
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 182, 249, 299, 604, 628, 668
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	2 cut(s)	285, 474
Hsp92I	GRCGYC	2 cut(s)	243, 285
HspAI	GCGC	4 cut(s)	185, 428, 450, 532
Ksp22I	TGATCA	2 cut(s)	444, 750
Kzo9I	GATC	5 cut(s)	165, 444, 609, 726, 750
LmnI	GCTCC	2 cut(s)	34, 192
LpnPI	CCDG	7 cut(s)	101, 163, 275, 376, 584, 632, 717
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	2 cut(s)	555, 649
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	285, 474
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	5 cut(s)	167, 446, 611, 728, 752
MboI	GATC	5 cut(s)	165, 444, 609, 726, 750
MboII	GAAGA	7 cut(s)	85, 88, 335, 364, 505, 550, 628
MluCI	AATT	1 cut(s)	766
MlyI	GAGTC	3 cut(s)	135, 239, 372
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	573
MspI	CCGG	1 cut(s)	262
MvnI	CGCG	4 cut(s)	428, 430, 452, 534
MwoI	GCNNNNNNNGC	7 cut(s)	110, 182, 249, 299, 604, 628, 668
NdeII	GATC	5 cut(s)	165, 444, 609, 726, 750
NlaIV	GGNNCC	1 cut(s)	711
NmeAIII	GCCGAG	2 cut(s)	246, 484
NmuCI	GTSAC	1 cut(s)	686
PceI	AGGCCT	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	7 cut(s)	234, 273, 282, 318, 471, 531, 659
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	5, 314, 650
PkrI	GCNGC	4 cut(s)	28, 356, 633, 714
Ple19I	CGATCG	1 cut(s)	729
PleI	GAGTC	3 cut(s)	134, 238, 371
PpsI	GAGTC	3 cut(s)	134, 238, 371
Ppu21I	YACGTR	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	711
PspPI	GGNCC	2 cut(s)	456, 710
PvuI	CGATCG	1 cut(s)	729
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	4 cut(s)	27, 355, 632, 713
Sau3AI	GATC	5 cut(s)	165, 444, 609, 726, 750
Sau96I	GGNCC	2 cut(s)	456, 710
SchI	GAGTC	3 cut(s)	135, 239, 372
SfaNI	GCATC	2 cut(s)	555, 649
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	766
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	9 cut(s)	24, 214, 318, 354, 430, 511, 518, 631, 713
SspMI	CTAG	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	672
TaiI	ACGT	2 cut(s)	288, 477
TasI	AATT	1 cut(s)	766
TauI	GCSGC	3 cut(s)	357, 634, 715
TfiI	GAWTC	3 cut(s)	5, 314, 650
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	2 cut(s)	6, 641
TspGWI	ACGGA	1 cut(s)	705
XmiI	GTMKAC	2 cut(s)	129, 366
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.