Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015475

Physical Location & Seq

Genomic Coordinates Forward (+)

2305181 .. 2306971

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1032200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGACTCGAAACCTTCAACAACCACCGCTCCTCTACTGAACCAGAAAAACCCTAACAATCCTCCATCGAAGCCGAAGCCAAGGGACTTCCTGAACCACCTCGAAGCCTACCTCGCCAAGCGAGATGGCGTCGACAAGCTCATCAAGATATCTCGGTACGCCACCAAGATCGTCATCGCCTCCTCCGCCCTCCCGGAAACCCTGCCCCTAACGCAGCGGCTCAAGAGCTTCGAGTCGAGCGTCGGCGTCAGTCGCAAGGCCTTCCGGTTAGGTAAGTTCGTCCAGGACGTCAACGCTCTGAGGAGCTCGACATTCGATTCGAATCAGGAGCTCGTACTCGCACTAATCGCCTACGGCGGCGAGGGACTGTATTTTTTCGTTGAACAGTTCGTCTGGCTGGTCAAATCGGGGTTGATCGATAAGAAGCACTCGCGGAATTTGCAGAAGATCAGCGCCTGGGCCGAGTTCATCGGGTACGCCGGCAGCATTTCGTTGAAATTCAGGGATTTGAATCGGATCTCGGAAGACGAAAAGTGCGTGAAATCGAGCATTGAGATCGCGATTACGAGGGGGAACGGGTGCGAGGAAGAGAAGGAGAGGTTGAGTAAATTGCGTGAGAAGAAAATGATGAAGAGGCTCTCTGTGGTTCAAGATTCGGCGGATGCGTTAATGGCGTTGGCGGATATCCGGGACGGCGGCGGACCGTTCCTGGGGCCGCTTTCGGTATCGCTGGCCGGGATGTTGTCGGCTCTGATTAGCACTCACAAAAATTGGGTGTCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEX11

Protein Analysis

262

Amino Acids

28.92

Weight (kDa)

9.55

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	31 - 258	3.8e-47	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47750
fragaria_vesca	FvH4_2g40140
malus_domestica	MD02G1189800.v1.1 MD08G1032200.v1.1 MD15G1028900.v1.1
prunus_persica	Prupe.1G382600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0300611
rosa_laevigata	RLG00000011319
rosa_multiflora	Rmu_co8435417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167590
rosa_rugosa	Rorug06G0298100
rosa_samantha	Rh6AG410500 Rh6BG417600 Rh6CG425200 Rh6DG410700
rosa_wichuraiana	Rw6G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccBSI	CCGCTC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	433, 560
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	2 cut(s)	436, 497
AcyI	GRCGYC	3 cut(s)	129, 246, 288
AfaI	GTAC	3 cut(s)	158, 336, 476
AfiI	CCNNNNNNNGG	1 cut(s)	710
AgsI	TTSAA	5 cut(s)	18, 383, 496, 511, 650
AjnI	CCWGG	3 cut(s)	282, 455, 708
AluBI	AGCT	4 cut(s)	139, 228, 306, 331
AluI	AGCT	4 cut(s)	139, 228, 306, 331
Alw21I	GWGCWC	2 cut(s)	308, 333
AlwI	GGATC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	456
AoxI	GGCC	4 cut(s)	258, 459, 713, 732
ApeKI	GCWGC	2 cut(s)	214, 483
ApoI	RAATTY	2 cut(s)	436, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	3 cut(s)	459, 701, 713
AsuC2I	CCSGG	3 cut(s)	194, 689, 736
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	701
BanII	GRGCYC	2 cut(s)	308, 333
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	2 cut(s)	308, 333
BbvI	GCAGC	2 cut(s)	226, 495
BccI	CCATC	2 cut(s)	73, 119
BceAI	ACGGC	2 cut(s)	370, 709
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BciT130I	CCWGG	3 cut(s)	284, 457, 710
BcnI	CCSGG	3 cut(s)	194, 689, 736
BfoI	RGCGCY	1 cut(s)	456
BisI	GCNGC	6 cut(s)	215, 218, 358, 484, 697, 716
BlsI	GCNGC	6 cut(s)	216, 219, 359, 485, 698, 717
Bme1390I	CCNGG	6 cut(s)	194, 284, 457, 689, 710, 736
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	3 cut(s)	459, 701, 713
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	6 cut(s)	194, 284, 457, 689, 710, 736
BmsI	GCATC	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	194, 689, 736
Bsa29I	ATCGAT	1 cut(s)	417
BsaBI	GATNNNNATC	3 cut(s)	173, 321, 510
BsaHI	GRCGYC	3 cut(s)	129, 246, 288
BsaJI	CCNNGG	3 cut(s)	80, 456, 709
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse118I	RCCGGY	1 cut(s)	479
Bse8I	GATNNNNATC	3 cut(s)	173, 321, 510
BseBI	CCWGG	3 cut(s)	284, 457, 710
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	3 cut(s)	80, 456, 709
BseGI	GGATG	2 cut(s)	667, 744
BseJI	GATNNNNATC	3 cut(s)	173, 321, 510
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	3 cut(s)	21, 172, 316
BseXI	GCAGC	2 cut(s)	226, 495
Bsh1236I	CGCG	2 cut(s)	433, 560
BshFI	GGCC	4 cut(s)	260, 461, 715, 734
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	308, 333
BsiSI	CCGG	5 cut(s)	194, 265, 480, 688, 735
BslFI	GGGAC	3 cut(s)	98, 378, 704
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmFI	GGGAC	3 cut(s)	98, 378, 704
BsnI	GGCC	4 cut(s)	260, 461, 715, 734
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	308, 333
Bsp143I	GATC	5 cut(s)	168, 414, 447, 516, 555
Bsp68I	TCGCGA	1 cut(s)	560
BspANI	GGCC	4 cut(s)	260, 461, 715, 734
BspCNI	CTCAG	1 cut(s)	291
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	2 cut(s)	433, 560
BspLI	GGNNCC	1 cut(s)	714
BspPI	GGATC	1 cut(s)	524
BspT104I	TTCGAA	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	3 cut(s)	80, 456, 709
BssMI	GATC	5 cut(s)	168, 414, 447, 516, 555
BssNI	GRCGYC	3 cut(s)	129, 246, 288
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	3 cut(s)	284, 457, 710
Bst4CI	ACNGT	3 cut(s)	369, 387, 705
Bst6I	CTCTTC	2 cut(s)	582, 626
BstACI	GRCGYC	3 cut(s)	129, 246, 288
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	481, 732
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	667, 744
BstFNI	CGCG	2 cut(s)	433, 560
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	5 cut(s)	171, 417, 450, 519, 558
BstMBI	GATC	5 cut(s)	168, 414, 447, 516, 555
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 185, 211, 252, 347, 439, 671
BstNI	CCWGG	3 cut(s)	284, 457, 710
BstSCI	CCNGG	6 cut(s)	192, 282, 455, 687, 708, 734
BstUI	CGCG	2 cut(s)	433, 560
BstV1I	GCAGC	2 cut(s)	226, 495
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	4 cut(s)	260, 461, 715, 734
BsuTUI	ATCGAT	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	667, 744
BtuMI	TCGCGA	1 cut(s)	560
Cac8I	GCNNGC	2 cut(s)	481, 732
CaiI	CAGNNNCTG	1 cut(s)	456
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	459, 701, 713
ClaI	ATCGAT	1 cut(s)	417
CpoI	CGGWCCG	1 cut(s)	701
CseI	GACGC	3 cut(s)	118, 229, 235
Csp6I	GTAC	3 cut(s)	157, 335, 475
CspI	CGGWCCG	1 cut(s)	701
CviQI	GTAC	3 cut(s)	157, 335, 475
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	5 cut(s)	170, 416, 449, 518, 557
DpnII	GATC	5 cut(s)	168, 414, 447, 516, 555
EaeI	YGGCCR	1 cut(s)	732
Eam1104I	CTCTTC	2 cut(s)	582, 626
EarI	CTCTTC	2 cut(s)	582, 626
EciI	GGCGGA	4 cut(s)	175, 674, 695, 714
Ecl136II	GAGCTC	2 cut(s)	306, 331
Eco130I	CCWWGG	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	308, 333
Eco32I	GATATC	2 cut(s)	150, 685
Eco47I	GGWCC	1 cut(s)	701
Eco53kI	GAGCTC	2 cut(s)	306, 331
EcoICRI	GAGCTC	2 cut(s)	306, 331
EcoRII	CCWGG	3 cut(s)	282, 455, 708
EcoRV	GATATC	2 cut(s)	150, 685
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	2 cut(s)	308, 333
ErhI	CCWWGG	1 cut(s)	80
FaqI	GGGAC	3 cut(s)	98, 378, 704
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	6 cut(s)	215, 218, 358, 484, 697, 716
FokI	GGATG	2 cut(s)	674, 751
FriOI	GRGCYC	2 cut(s)	308, 333
Fsp4HI	GCNGC	6 cut(s)	215, 218, 358, 484, 697, 716
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	6 cut(s)	215, 218, 358, 484, 697, 716
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	4 cut(s)	260, 461, 715, 734
HapII	CCGG	5 cut(s)	194, 265, 480, 688, 735
HgaI	GACGC	3 cut(s)	118, 229, 235
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	3 cut(s)	129, 246, 288
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	2 cut(s)	133, 292
HindII	GTYRAC	2 cut(s)	133, 292
HinfI	GANTC	6 cut(s)	5, 233, 317, 322, 511, 653
HpaII	CCGG	5 cut(s)	194, 265, 480, 688, 735
Hpy166II	GTNNAC	2 cut(s)	133, 292
Hpy188I	TCNGA	4 cut(s)	300, 516, 523, 753
Hpy188III	TCNNGA	6 cut(s)	91, 145, 223, 326, 559, 650
Hpy8I	GTNNAC	2 cut(s)	133, 292
Hpy99I	CGWCG	2 cut(s)	134, 245
HpyAV	CCTTC	3 cut(s)	24, 271, 586
HpyCH4III	ACNGT	3 cut(s)	369, 387, 705
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	442
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 185, 211, 252, 347, 439, 671
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	3 cut(s)	129, 246, 288
HspAI	GCGC	1 cut(s)	453
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	168, 414, 447, 516, 555
LmnI	GCTCC	3 cut(s)	34, 303, 328
Lsp1109I	GCAGC	2 cut(s)	226, 495
LweI	GCATC	1 cut(s)	652
MaeII	ACGT	1 cut(s)	288
MalI	GATC	5 cut(s)	170, 416, 449, 518, 557
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	5 cut(s)	168, 414, 447, 516, 555
MboII	GAAGA	5 cut(s)	457, 536, 599, 631, 643
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	2 cut(s)	308, 333
MluCI	AATT	4 cut(s)	436, 497, 608, 769
MlyI	GAGTC	1 cut(s)	242
MroNI	GCCGGC	1 cut(s)	479
MseI	TTAA	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	5 cut(s)	194, 265, 480, 688, 735
MspR9I	CCNGG	6 cut(s)	194, 284, 457, 689, 710, 736
MvaI	CCWGG	3 cut(s)	284, 457, 710
MvnI	CGCG	2 cut(s)	433, 560
MwoI	GCNNNNNNNGC	7 cut(s)	113, 185, 211, 252, 347, 439, 671
NaeI	GCCGGC	1 cut(s)	481
NciI	CCSGG	3 cut(s)	194, 689, 736
NdeII	GATC	5 cut(s)	168, 414, 447, 516, 555
NgoMIV	GCCGGC	1 cut(s)	479
NlaIV	GGNNCC	1 cut(s)	714
NmeAIII	GCCGAG	1 cut(s)	487
NruI	TCGCGA	1 cut(s)	560
NspV	TTCGAA	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	4 cut(s)	237, 285, 534, 662
PdiI	GCCGGC	1 cut(s)	481
PfeI	GAWTC	4 cut(s)	317, 322, 511, 653
PfoI	TCCNGGA	3 cut(s)	192, 282, 687
PkrI	GCNGC	6 cut(s)	216, 219, 359, 485, 698, 717
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp124BI	GAGCTC	2 cut(s)	308, 333
Psp6I	CCWGG	3 cut(s)	282, 455, 708
PspGI	CCWGG	3 cut(s)	282, 455, 708
PspN4I	GGNNCC	1 cut(s)	714
PspPI	GGNCC	3 cut(s)	459, 701, 713
PstNI	CAGNNNCTG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	516
RruI	TCGCGA	1 cut(s)	560
RsaI	GTAC	3 cut(s)	158, 336, 476
RsaNI	GTAC	3 cut(s)	157, 335, 475
Rsr2I	CGGWCCG	1 cut(s)	701
RsrII	CGGWCCG	1 cut(s)	701
SacI	GAGCTC	2 cut(s)	308, 333
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	6 cut(s)	215, 218, 358, 484, 697, 716
Sau3AI	GATC	5 cut(s)	168, 414, 447, 516, 555
Sau96I	GGNCC	3 cut(s)	459, 701, 713
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	6 cut(s)	194, 284, 457, 689, 710, 736
SduI	GDGCHC	2 cut(s)	308, 333
SfaNI	GCATC	1 cut(s)	652
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	436, 497, 608, 769
SseBI	AGGCCT	1 cut(s)	260
SstI	GAGCTC	2 cut(s)	308, 333
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	6 cut(s)	192, 282, 455, 687, 708, 734
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	3 cut(s)	369, 387, 705
TaiI	ACGT	1 cut(s)	291
TasI	AATT	4 cut(s)	436, 497, 608, 769
TauI	GCSGC	4 cut(s)	220, 360, 699, 718
TfiI	GAWTC	4 cut(s)	317, 322, 511, 653
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TseI	GCWGC	2 cut(s)	214, 483
TspDTI	ATGAA	2 cut(s)	457, 644
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	2 cut(s)	436, 497
XmiI	GTMKAC	1 cut(s)	132
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.