Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8435417.1

Orthogroup ID

OG0015475

Physical Location & Seq

Genomic Coordinates Reverse (-)

734 .. 1507

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8435417.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggagtcagaagcttcaactcccttgctaaaaaaggaaagccctattgttcaatcgaagccgaataataaagacttcttgaaccacctcgaagcctacctcgcaaagcgagatggcgtggacaagcttctaaagatatctagatacgccaccaagatcatactcgcctcctcagccctccccgaaaccctaaccctaaatcaccgcctcaagagcttcgagtcgagcgtgggggtcagccgcaaggccttcaggctcggcaagttcgtccaagacgtcaacgccctgagaaattcgcatttcgattccaaggaagagctcgccctctcgctcgtcgcctacggcggcgaggggttgtactttttcgtcgagcagttcgtgtggctggtcaaatcgggcttgattgacaagaagcacgcgcggagtttggggctgatcagcgcgtgggcggagttcgttgggtacttggggagtgtttcgttgaagattagggatttgaatcggatttcggaggacgagaagcgcgtgaagatgagcatcgaggttgcgattacgagggggattaagtgtgaggaagagaaggagaggctggggaagttgattcagaagaaactgatgaaacgactgtctgttgttcaggatttggccgatgcgttaatggcggtcgctgatattcgtgacggaaaaggacactttctggggccgctgtctgtatcaattgcagggctattatcggcattgatcagcactcataagaattgggtttcttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEX11

Protein Analysis

257

Amino Acids

28.63

Weight (kDa)

9.5

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47750
fragaria_vesca	FvH4_2g40140
malus_domestica	MD02G1189800.v1.1 MD08G1032200.v1.1 MD15G1028900.v1.1
prunus_persica	Prupe.1G382600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0300611
rosa_laevigata	RLG00000011319
rosa_multiflora	Rmu_co8435417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167590
rosa_rugosa	Rorug06G0298100
rosa_samantha	Rh6AG410500 Rh6BG417600 Rh6CG425200 Rh6DG410700
rosa_wichuraiana	Rw6G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccII	CGCG	4 cut(s)	419, 421, 443, 525
AciI	CCGC	7 cut(s)	205, 241, 345, 421, 449, 662, 704
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	235
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	359, 464
AgsI	TTSAA	5 cut(s)	18, 53, 82, 484, 499
AluBI	AGCT	4 cut(s)	14, 127, 216, 319
AluI	AGCT	4 cut(s)	14, 127, 216, 319
Alw21I	GWGCWC	1 cut(s)	321
AoxI	GGCC	3 cut(s)	246, 645, 701
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	3 cut(s)	421, 443, 525
AspS9I	GGNCC	1 cut(s)	701
AsuHPI	GGTGA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	358
BclI	TGATCA	2 cut(s)	435, 741
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	3 cut(s)	241, 346, 704
BlsI	GCNGC	3 cut(s)	242, 347, 705
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	702
BmsI	GCATC	2 cut(s)	546, 640
Bpu10I	CCTNAGC	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	194
BsaBI	GATNNNNATC	2 cut(s)	498, 536
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	309
Bse8I	GATNNNNATC	2 cut(s)	498, 536
BseDI	CCNNGG	1 cut(s)	309
BseJI	GATNNNNATC	2 cut(s)	498, 536
BseMII	CTCAG	2 cut(s)	186, 278
BseRI	GAGGAG	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	589
Bsh1236I	CGCG	4 cut(s)	419, 421, 443, 525
Bsh1285I	CGRYCG	1 cut(s)	666
BshFI	GGCC	3 cut(s)	248, 647, 703
BsiEI	CGRYCG	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	248, 647, 703
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	156, 435, 741
BspACI	CCGC	7 cut(s)	205, 241, 345, 421, 449, 662, 704
BspANI	GGCC	3 cut(s)	248, 647, 703
BspCNI	CTCAG	2 cut(s)	185, 279
BspFNI	CGCG	4 cut(s)	419, 421, 443, 525
BspLI	GGNNCC	1 cut(s)	702
BspQI	GCTCTTC	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	3 cut(s)	156, 435, 741
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	627
Bst6I	CTCTTC	2 cut(s)	309, 570
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	321, 417
BstDEI	CTNAG	2 cut(s)	172, 287
BstFNI	CGCG	4 cut(s)	419, 421, 443, 525
BstHHI	GCGC	3 cut(s)	421, 443, 525
BstKTI	GATC	3 cut(s)	159, 438, 744
BstMBI	GATC	3 cut(s)	156, 435, 741
BstMCI	CGRYCG	1 cut(s)	666
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 173, 213, 659
BstUI	CGCG	4 cut(s)	419, 421, 443, 525
BsuRI	GGCC	3 cut(s)	248, 647, 703
Cac8I	GCNNGC	2 cut(s)	321, 417
CfoI	GCGC	3 cut(s)	421, 443, 525
Cfr13I	GGNCC	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	358, 463
CviQI	GTAC	2 cut(s)	358, 463
DdeI	CTNAG	2 cut(s)	172, 287
DpnI	GATC	3 cut(s)	158, 437, 743
DpnII	GATC	3 cut(s)	156, 435, 741
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	309, 570
EarI	CTCTTC	2 cut(s)	309, 570
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	309
FaiI	YATR	2 cut(s)	161, 753
FbaI	TGATCA	2 cut(s)	435, 741
Fnu4HI	GCNGC	3 cut(s)	241, 346, 704
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	3 cut(s)	241, 346, 704
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	3 cut(s)	420, 442, 524
GluI	GCNGC	3 cut(s)	241, 346, 704
GsaI	CCCAGC	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	248, 647, 703
HhaI	GCGC	3 cut(s)	421, 443, 525
Hin1I	GRCGYC	1 cut(s)	276
Hin6I	GCGC	3 cut(s)	419, 441, 523
HinP1I	GCGC	3 cut(s)	419, 441, 523
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	2 cut(s)	12, 125
HinfI	GANTC	5 cut(s)	5, 221, 305, 499, 601
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	121, 280
Hpy188I	TCNGA	4 cut(s)	10, 504, 511, 606
Hpy188III	TCNNGA	5 cut(s)	79, 141, 211, 638, 677
Hpy8I	GTNNAC	2 cut(s)	121, 280
Hpy99I	CGWCG	2 cut(s)	338, 371
HpyAV	CCTTC	2 cut(s)	259, 574
HpyCH4III	ACNGT	1 cut(s)	627
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 173, 213, 659
HpyF3I	CTNAG	2 cut(s)	172, 287
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	276
HspAI	GCGC	3 cut(s)	419, 441, 523
Ksp22I	TGATCA	2 cut(s)	435, 741
Kzo9I	GATC	3 cut(s)	156, 435, 741
LguI	GCTCTTC	1 cut(s)	309
LpnPI	CCDG	7 cut(s)	238, 299, 371, 575, 623, 683, 708
LweI	GCATC	2 cut(s)	546, 640
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	3 cut(s)	158, 437, 743
MboI	GATC	3 cut(s)	156, 435, 741
MboII	GAAGA	5 cut(s)	326, 496, 541, 587, 619
MfeI	CAATTG	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	3 cut(s)	292, 717, 757
MlyI	GAGTC	2 cut(s)	14, 230
MseI	TTAA	2 cut(s)	564, 656
MspA1I	CMGCKG	1 cut(s)	706
MunI	CAATTG	1 cut(s)	717
MvnI	CGCG	4 cut(s)	419, 421, 443, 525
MwoI	GCNNNNNNNGC	4 cut(s)	101, 173, 213, 659
NdeII	GATC	3 cut(s)	156, 435, 741
NlaIV	GGNNCC	1 cut(s)	702
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	5 cut(s)	225, 264, 273, 375, 522
PfeI	GAWTC	3 cut(s)	305, 499, 601
PkrI	GCNGC	3 cut(s)	242, 347, 705
PleI	GAGTC	2 cut(s)	13, 229
PpsI	GAGTC	2 cut(s)	13, 229
Psp124BI	GAGCTC	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	589
PspN4I	GGNNCC	1 cut(s)	702
PspPI	GGNCC	1 cut(s)	701
RsaI	GTAC	2 cut(s)	359, 464
RsaNI	GTAC	2 cut(s)	358, 463
SacI	GAGCTC	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	564, 656
SatI	GCNGC	3 cut(s)	241, 346, 704
Sau3AI	GATC	3 cut(s)	156, 435, 741
Sau96I	GGNCC	1 cut(s)	701
SchI	GAGTC	2 cut(s)	14, 230
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	8 cut(s)	16, 90, 102, 129, 218, 279, 321, 546
SfaNI	GCATC	2 cut(s)	546, 640
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	292, 717, 757
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	7 cut(s)	205, 241, 345, 421, 449, 662, 704
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	627
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	7 cut(s)	56, 90, 219, 224, 303, 369, 540
TasI	AATT	3 cut(s)	292, 717, 757
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	3 cut(s)	243, 348, 706
TfiI	GAWTC	3 cut(s)	305, 499, 601
Tru1I	TTAA	2 cut(s)	564, 656
Tru9I	TTAA	2 cut(s)	564, 656
TseFI	GTSAC	1 cut(s)	677
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	1 cut(s)	632
TspGWI	ACGGA	1 cut(s)	696
XapI	RAATTY	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	140
XspI	CTAG	1 cut(s)	141
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.