Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015475

Physical Location & Seq

Genomic Coordinates Reverse (-)

34401033 .. 34402297

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G382600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGATTCCAAAGCTTCAACAACGGCCACTCCTCTACTGAACCAGGAAAAACCTAATAATCTTCCATCAAATCCCAAGAAGGAAAGAGACTTCCTGAACCACGTCGAAGCGTACCTCGCAAAGAGAGATGGCGTGGACAAGCTGCTCAAGATATCCAGGTACGCCACCAAGATCATACTCGCCTCATCTGCACTCCCCGAAACCCTAACCCTAACTCACCGCCTCAAGAGCTTCGAGTCGAGCGTAGGGGTGAGCCGCAAAGCCTTTAGGCTCGGGAAGTTCGTCCAGGACGTGAACGCTCTGAGAAACTCGAATTTCGATTCGAATGAAGACCTCGTCCTCTCCCTCTTCGCCTACGGTGGCGAGGGCTTGTATTTCTTCGTCGAGCAATTCATTTGGTTGGCCAAATCTGGTTTGATCGATAGCAAACACTCGCGCAGTTTGCAAAAAATCAGCGCTTGGGCCGAGTTCATTGGGTACGTCGGTAGCATTTCGTTGAAATTTAGGGATTTGAATCGAATTTCCGAAGATGAAAAGTGCCTGAAATCGAGTATTGAGATCGCAATTACGAGGGGAAATAAGTGCCAGGAAGAAAAGGAGAGATTGAGTAAATTGTGTGAAAAGAAATTGATGAAGAGGCTTTCTGTTGTACAAGATGCGGCCGACGCGTTAATGGCATTAGCTGATATTCGTGACGGCGACGGGCCCTTTTTGGGGCCGCTTTCGATATCATTAGCCGGGATGCTATCGGCACTAATTAGCACTCACAAGAATTGGGTGTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEX11

Protein Analysis

263

Amino Acids

29.25

Weight (kDa)

9.14

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47750
fragaria_vesca	FvH4_2g40140
malus_domestica	MD02G1189800.v1.1 MD08G1032200.v1.1 MD15G1028900.v1.1
prunus_persica	Prupe.1G382600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0300611
rosa_laevigata	RLG00000011319
rosa_multiflora	Rmu_co8435417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167590
rosa_rugosa	Rorug06G0298100
rosa_samantha	Rh6AG410500 Rh6BG417600 Rh6CG425200 Rh6DG410700
rosa_wichuraiana	Rw6G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	436, 668
AciI	CCGC	4 cut(s)	220, 256, 659, 719
AcoI	YGGCCR	3 cut(s)	24, 402, 660
AcsI	RAATTY	3 cut(s)	313, 500, 519
AfaI	GTAC	4 cut(s)	113, 161, 479, 651
AfeI	AGCGCT	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	713, 714
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	3 cut(s)	18, 499, 514
AjiI	CACGTC	2 cut(s)	103, 292
AjnI	CCWGG	4 cut(s)	42, 155, 285, 585
AluBI	AGCT	4 cut(s)	14, 142, 231, 683
AluI	AGCT	4 cut(s)	14, 142, 231, 683
Alw26I	GTCTC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	457
AoxI	GGCC	6 cut(s)	24, 402, 462, 660, 704, 716
ApaI	GGGCCC	1 cut(s)	708
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	3 cut(s)	313, 500, 519
AspLEI	GCGC	2 cut(s)	438, 458
AspS9I	GGNCC	4 cut(s)	462, 704, 705, 716
AsuC2I	CCSGG	1 cut(s)	739
AsuHPI	GGTGA	2 cut(s)	209, 262
AsuII	TTCGAA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	708
BaeI	ACNNNNGTAYC	2 cut(s)	469, 502
BalI	TGGCCA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	2 cut(s)	73, 122
BceAI	ACGGC	2 cut(s)	39, 712
BciT130I	CCWGG	4 cut(s)	44, 157, 287, 587
BcnI	CCSGG	1 cut(s)	739
BcoDI	GTCTC	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	459
BisI	GCNGC	4 cut(s)	143, 256, 660, 719
BlsI	GCNGC	4 cut(s)	144, 257, 661, 720
Bme1390I	CCNGG	5 cut(s)	44, 157, 287, 587, 739
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	2 cut(s)	103, 292
BmgT120I	GGNCC	4 cut(s)	462, 704, 705, 716
BmiI	GGNNCC	2 cut(s)	706, 717
BmrFI	CCNGG	5 cut(s)	44, 157, 287, 587, 739
BmsI	GCATC	2 cut(s)	646, 732
BpiI	GAAGAC	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	323
BpuEI	CTTGAG	2 cut(s)	131, 209
BpuMI	CCSGG	1 cut(s)	739
Bsa29I	ATCGAT	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	713, 714
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	4 cut(s)	44, 157, 287, 587
BseCI	ATCGAT	1 cut(s)	420
BseGI	GGATG	1 cut(s)	747
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	713, 714
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	708
BseX3I	CGGCCG	1 cut(s)	660
BseXI	GCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	2 cut(s)	436, 668
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	6 cut(s)	26, 404, 464, 662, 706, 718
BshVI	ATCGAT	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	663
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	738
BslI	CCNNNNNNNGG	2 cut(s)	713, 714
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	6 cut(s)	26, 404, 464, 662, 706, 718
BsoBI	CYCGRG	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	3 cut(s)	171, 417, 558
BspACI	CCGC	4 cut(s)	220, 256, 659, 719
BspANI	GGCC	6 cut(s)	26, 404, 464, 662, 706, 718
BspCNI	CTCAG	1 cut(s)	294
BspDI	ATCGAT	1 cut(s)	420
BspFNI	CGCG	2 cut(s)	436, 668
BspLI	GGNNCC	2 cut(s)	706, 717
BspT104I	TTCGAA	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	649
BssMI	GATC	3 cut(s)	171, 417, 558
Bst2UI	CCWGG	4 cut(s)	44, 157, 287, 587
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	353, 629
BstAUI	TGTACA	1 cut(s)	649
BstBI	TTCGAA	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	747
BstFNI	CGCG	2 cut(s)	436, 668
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	2 cut(s)	438, 458
BstKTI	GATC	3 cut(s)	174, 420, 561
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	3 cut(s)	171, 417, 558
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 188, 228, 442, 665, 674
BstNI	CCWGG	4 cut(s)	44, 157, 287, 587
BstSCI	CCNGG	5 cut(s)	42, 155, 285, 585, 737
BstSLI	GKGCMC	1 cut(s)	708
BstUI	CGCG	2 cut(s)	436, 668
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	336
BstZI	CGGCCG	1 cut(s)	660
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	6 cut(s)	26, 404, 464, 662, 706, 718
BsuTUI	ATCGAT	1 cut(s)	420
BtrI	CACGTC	2 cut(s)	103, 292
BtsCI	GGATG	1 cut(s)	747
CfoI	GCGC	2 cut(s)	438, 458
Cfr13I	GGNCC	4 cut(s)	462, 704, 705, 716
ClaI	ATCGAT	1 cut(s)	420
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	4 cut(s)	112, 160, 478, 650
CviQI	GTAC	4 cut(s)	112, 160, 478, 650
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	3 cut(s)	173, 419, 560
DpnII	GATC	3 cut(s)	171, 417, 558
EaeI	YGGCCR	3 cut(s)	24, 402, 660
EagI	CGGCCG	1 cut(s)	660
Eam1104I	CTCTTC	2 cut(s)	353, 629
EarI	CTCTTC	2 cut(s)	353, 629
EclXI	CGGCCG	1 cut(s)	660
Eco24I	GRGCYC	1 cut(s)	708
Eco32I	GATATC	2 cut(s)	153, 729
Eco47III	AGCGCT	1 cut(s)	457
Eco52I	CGGCCG	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	705
EcoRII	CCWGG	4 cut(s)	42, 155, 285, 585
EcoRV	GATATC	2 cut(s)	153, 729
EcoT38I	GRGCYC	1 cut(s)	708
FaiI	YATR	1 cut(s)	176
Fnu4HI	GCNGC	4 cut(s)	143, 256, 660, 719
FokI	GGATG	1 cut(s)	754
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	4 cut(s)	143, 256, 660, 719
GlaI	GCGC	2 cut(s)	437, 457
GluI	GCNGC	4 cut(s)	143, 256, 660, 719
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	6 cut(s)	26, 404, 464, 662, 706, 718
HapII	CCGG	1 cut(s)	738
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	2 cut(s)	438, 458
Hin6I	GCGC	2 cut(s)	436, 456
HinP1I	GCGC	2 cut(s)	436, 456
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	4 cut(s)	5, 236, 320, 514
HpaII	CCGG	1 cut(s)	738
HphI	GGTGA	2 cut(s)	209, 262
Hpy166II	GTNNAC	2 cut(s)	136, 295
Hpy188I	TCNGA	2 cut(s)	303, 526
Hpy188III	TCNNGA	5 cut(s)	94, 148, 226, 274, 692
Hpy8I	GTNNAC	2 cut(s)	136, 295
Hpy99I	CGWCG	5 cut(s)	107, 386, 485, 668, 704
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	3 cut(s)	102, 291, 480
HpyCH4V	TGCA	2 cut(s)	191, 445
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 188, 228, 442, 665, 674
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	3 cut(s)	102, 291, 480
HspAI	GCGC	2 cut(s)	436, 456
Kzo9I	GATC	3 cut(s)	171, 417, 558
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	2 cut(s)	646, 732
MaeII	ACGT	3 cut(s)	102, 291, 480
MaeIII	GTNAC	1 cut(s)	692
MalI	GATC	3 cut(s)	173, 419, 560
MboI	GATC	3 cut(s)	171, 417, 558
MboII	GAAGA	7 cut(s)	53, 340, 341, 370, 539, 602, 646
MhlI	GDGCHC	1 cut(s)	708
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	9 cut(s)	313, 389, 500, 519, 564, 611, 626, 756, 772
MluI	ACGCGT	1 cut(s)	666
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	245
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	1 cut(s)	738
MspR9I	CCNGG	5 cut(s)	44, 157, 287, 587, 739
MvaI	CCWGG	4 cut(s)	44, 157, 287, 587
MvnI	CGCG	2 cut(s)	436, 668
MwoI	GCNNNNNNNGC	6 cut(s)	116, 188, 228, 442, 665, 674
NciI	CCSGG	1 cut(s)	739
NdeII	GATC	3 cut(s)	171, 417, 558
NlaIV	GGNNCC	2 cut(s)	706, 717
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	692
NspV	TTCGAA	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	3 cut(s)	240, 279, 288
PfeI	GAWTC	3 cut(s)	5, 320, 514
PflFI	GACNNNGTC	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	144, 257, 661, 720
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	4 cut(s)	42, 155, 285, 585
PspGI	CCWGG	4 cut(s)	42, 155, 285, 585
PspN4I	GGNNCC	2 cut(s)	706, 717
PspOMI	GGGCCC	1 cut(s)	704
PspPI	GGNCC	4 cut(s)	462, 704, 705, 716
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	4 cut(s)	113, 161, 479, 651
RsaNI	GTAC	4 cut(s)	112, 160, 478, 650
SaqAI	TTAA	1 cut(s)	671
SatI	GCNGC	4 cut(s)	143, 256, 660, 719
Sau3AI	GATC	3 cut(s)	171, 417, 558
Sau96I	GGNCC	4 cut(s)	462, 704, 705, 716
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	5 cut(s)	44, 157, 287, 587, 739
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	646, 732
SfuI	TTCGAA	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	146, 224
SmoI	CTYRAG	2 cut(s)	146, 224
Sse9I	AATT	9 cut(s)	313, 389, 500, 519, 564, 611, 626, 756, 772
SsiI	CCGC	4 cut(s)	220, 256, 659, 719
StyD4I	CCNGG	5 cut(s)	42, 155, 285, 585, 737
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	3 cut(s)	105, 294, 483
TasI	AATT	9 cut(s)	313, 389, 500, 519, 564, 611, 626, 756, 772
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	3 cut(s)	258, 662, 721
TfiI	GAWTC	3 cut(s)	5, 320, 514
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	5 cut(s)	342, 382, 460, 546, 647
Tth111I	GACNNNGTC	1 cut(s)	335
XapI	RAATTY	3 cut(s)	313, 500, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.