AT1G47830

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013830
Physical Location & Seq
Reverse (-)
17613029 .. 17614986
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47830.1

Sequence Viewer

Length: 429 bp
ATGATCCGATTCATATTATTGCAGAACAGACAAGGTAAGACTCGTCTAGCCAAATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGAATACGAGGTTCATAGATTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAGTTTAGAACACACAAGGTGATATACAGGCGTTATGCTGGATTGTTTTTCTCTGTGTGCGTGGATATAACCGACAATGAGTTGGCTTACTTGGAGAGTATCCATTTGTTTGTGGAGATATTGGACCATTTCTTCAGCAATGTTTGTGAGCTAGATTTGGTGTTTAATTTCCACAAGGTGTACTTGATACTCGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAGGGCAATCATCGAAAGGATGTCAGAACTCGAGAAGCTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005905 GO:0012505 GO:0016020 GO:0044425 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

142

Amino Acids

17.07

Weight (kDa)

6.07

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 141 9.7e-54 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47830
fragaria_vesca FvH4_2g38510
malus_domestica MD08G1013400.v1.1 MD15G1012800.v1.1
prunus_persica Prupe.1G365900_v2.0.a1
pyrus_communis pycom08g01180 pycom15g01110
rosa_chinensis RchiOBHm_Chr6g0302791
rosa_laevigata RLG00000011137
rosa_multiflora Rmu_ssc0000460.1_g000005
rosa_roxburghii Rroxscaffold_7G00165320
rosa_rugosa Rorug06G0317000
rosa_samantha Rh6AG430400 Rh6BG472200 Rh6CG442900 Rh6DG429600
rosa_wichuraiana Rw6G037280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 126
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 268
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 2 cut(s) 169, 328
AfaI GTAC 1 cut(s) 332
AluBI AGCT 3 cut(s) 301, 367, 421
AluI AGCT 3 cut(s) 301, 367, 421
Alw21I GWGCWC 1 cut(s) 369
Ama87I CYCGRG 1 cut(s) 413
ApoI RAATTY 1 cut(s) 134
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 3 cut(s) 130, 130, 181
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 369
BciVI GTATCC 1 cut(s) 260
BfaI CTAG 2 cut(s) 47, 302
BfmI CTRYAG 1 cut(s) 422
BfuI GTATCC 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 295
BseGI GGATG 1 cut(s) 408
BseMI GCAATG 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 1 cut(s) 3
Bsp68I TCGCGA 1 cut(s) 126
BspFNI CGCG 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 295
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 129
BstF5I GGATG 1 cut(s) 408
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstSFI CTRYAG 1 cut(s) 422
BstUI CGCG 1 cut(s) 126
BsuI GTATCC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 408
BtuMI TCGCGA 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 274
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 331
CviJI RGCY 5 cut(s) 50, 236, 301, 367, 421
CviKI_1 RGCY 5 cut(s) 50, 236, 301, 367, 421
CviQI GTAC 1 cut(s) 331
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraIII CACNNNGTG 2 cut(s) 169, 328
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 413
EcoICRI GAGCTC 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 369
FaiI YATR 6 cut(s) 14, 60, 108, 175, 186, 218
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 47
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 369
FspBI CTAG 2 cut(s) 47, 302
GsaI CCCAGC 1 cut(s) 363
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 129
HinfI GANTC 4 cut(s) 9, 40, 74, 121
HphI GGTGA 3 cut(s) 130, 130, 181
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 8, 79, 409
Hpy188III TCNNGA 3 cut(s) 68, 125, 415
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 364, 372
LpnPI CCDG 3 cut(s) 163, 174, 345
MaeI CTAG 2 cut(s) 47, 302
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 83, 274
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 2 cut(s) 134, 316
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 2 cut(s) 75, 94
MseI TTAA 1 cut(s) 315
MvnI CGCG 1 cut(s) 126
NdeII GATC 1 cut(s) 3
NruI TCGCGA 1 cut(s) 126
PaeR7I CTCGAG 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 3 cut(s) 9, 74, 121
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 274
RruI TCGCGA 1 cut(s) 126
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 369
SetI ASST 7 cut(s) 37, 105, 171, 303, 330, 369, 423
SfcI CTRYAG 1 cut(s) 422
Sfr274I CTCGAG 1 cut(s) 413
SinI GGWCC 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 134, 316
SspMI CTAG 2 cut(s) 47, 302
SstI GAGCTC 1 cut(s) 369
TaaI ACNGT 1 cut(s) 426
TaqI TCGA 5 cut(s) 69, 93, 342, 396, 414
TasI AATT 2 cut(s) 134, 316
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 3 cut(s) 9, 74, 121
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TspDTI ATGAA 2 cut(s) 95, 340
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 413
XspI CTAG 2 cut(s) 47, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.