MD15G1012800.v1.1

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013830
Physical Location & Seq
Reverse (-)
709417 .. 711385
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1012800.v1.1.491

Sequence Viewer

Length: 642 bp
ATGTTGACCAAGACCATCAACGGAGACAAGTCTCCTCTACCCAAGTTAAGCACACCGTTTTTTATCTTCCTCTTTCTCTTACCGCCCCGCGACCCACTGGAACTCCGAGACGACATCGCACAACGAAACCATAAAAGAAAAGGGAAGTTGGTAGCTTTCGTCCCGAAGTTTCGGTGTTCCGCTGTTGTTAATTTCTCCAGTTTTGCTTCGACAATGATCCGATTCATACTGTTACAGAACCGGCAGGGAAAGACCCGGTTAGCCAAGTACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTCGAATACGAGGTTCATCGTTTGGTGGTCAACAGAGATCCCAAGTTCACAAATTTCGTCGAGTTCCGTACACACAAGGTTATATACAGGAGATATGCAGGATTGTTTTTCTCACTGTGTGTTGATATAACTGACAATGAGCTGGCATACTTGGAATGCATTCATCTGTTCGTCGAAATTTTGGATCATTTTTTCAGCAATGTTTGTGAGCTCGATTTGGTCTTTAACTTTCATAAGGTCTATCTGATACTGGATGAGTTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAGAAGGCAATAATAGAGAGAATGGGGGAACTCGAAAAACTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

214

Amino Acids

25.1

Weight (kDa)

8.59

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 72 - 212 1.3e-53 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47830
fragaria_vesca FvH4_2g38510
malus_domestica MD08G1013400.v1.1 MD15G1012800.v1.1
prunus_persica Prupe.1G365900_v2.0.a1
pyrus_communis pycom08g01180 pycom15g01110
rosa_chinensis RchiOBHm_Chr6g0302791
rosa_laevigata RLG00000011137
rosa_multiflora Rmu_ssc0000460.1_g000005
rosa_roxburghii Rroxscaffold_7G00165320
rosa_rugosa Rorug06G0317000
rosa_samantha Rh6AG430400 Rh6BG472200 Rh6CG442900 Rh6DG429600
rosa_wichuraiana Rw6G037280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 3 cut(s) 83, 88, 180
AclWI GGATC 3 cut(s) 211, 335, 495
AcsI RAATTY 2 cut(s) 355, 480
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 2 cut(s) 269, 373
AluBI AGCT 4 cut(s) 155, 445, 514, 580
AluI AGCT 4 cut(s) 155, 445, 514, 580
Alw21I GWGCWC 2 cut(s) 516, 582
Alw26I GTCTC 3 cut(s) 18, 36, 102
AlwI GGATC 3 cut(s) 211, 335, 495
Ama87I CYCGRG 1 cut(s) 281
ApoI RAATTY 2 cut(s) 355, 480
Asp700I GAANNNNTTC 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 281
BanII GRGCYC 2 cut(s) 516, 582
Bbv12I GWGCWC 2 cut(s) 516, 582
BccI CCATC 1 cut(s) 23
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 18, 36, 102
BfaI CTAG 1 cut(s) 635
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 256
BpmI CTGGAG 2 cut(s) 181, 594
BpuMI CCSGG 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 3 cut(s) 102, 198, 558
Bse3DI GCAATG 1 cut(s) 508
BseGI GGATG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 508
BseNI ACTGG 3 cut(s) 102, 198, 558
BseRI GAGGAG 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 516, 582
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 241, 256
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 3 cut(s) 18, 36, 102
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 2 cut(s) 462, 464
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 516, 582
Bsp143I GATC 3 cut(s) 216, 340, 487
BspACI CCGC 3 cut(s) 83, 88, 180
BspFNI CGCG 1 cut(s) 90
BspPI GGATC 3 cut(s) 211, 335, 495
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 3 cut(s) 102, 198, 558
BssAI RCCGGY 1 cut(s) 240
BssMI GATC 3 cut(s) 216, 340, 487
Bst4CI ACNGT 3 cut(s) 57, 231, 420
BstC8I GCNNGC 1 cut(s) 447
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 3 cut(s) 219, 343, 490
BstMAI GTCTC 3 cut(s) 18, 36, 102
BstMBI GATC 3 cut(s) 216, 340, 487
BstSCI CCNGG 1 cut(s) 254
BstUI CGCG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 562
BtsIMutI CAGTG 2 cut(s) 95, 416
Cac8I GCNNGC 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 240
Csp6I GTAC 2 cut(s) 268, 372
CviJI RGCY 5 cut(s) 155, 263, 445, 514, 580
CviKI_1 RGCY 5 cut(s) 155, 263, 445, 514, 580
CviQI GTAC 2 cut(s) 268, 372
DpnI GATC 3 cut(s) 218, 342, 489
DpnII GATC 3 cut(s) 216, 340, 487
DraIII CACNNNGTG 1 cut(s) 422
Ecl136II GAGCTC 2 cut(s) 514, 580
Eco24I GRGCYC 2 cut(s) 516, 582
Eco53kI GAGCTC 2 cut(s) 514, 580
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 2 cut(s) 514, 580
EcoT22I ATGCAT 1 cut(s) 464
EcoT38I GRGCYC 2 cut(s) 516, 582
Esp3I CGTCTC 1 cut(s) 102
FaiI YATR 8 cut(s) 132, 227, 386, 388, 399, 431, 451, 537
FaqI GGGAC 1 cut(s) 146
FauI CCCGC 1 cut(s) 95
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 2 cut(s) 516, 582
FspBI CTAG 1 cut(s) 635
GsuI CTGGAG 2 cut(s) 181, 594
HapII CCGG 2 cut(s) 241, 256
HincII GTYRAC 2 cut(s) 6, 334
HindII GTYRAC 2 cut(s) 6, 334
HinfI GANTC 2 cut(s) 222, 287
HpaII CCGG 2 cut(s) 241, 256
Hpy166II GTNNAC 4 cut(s) 6, 334, 351, 374
Hpy188I TCNGA 4 cut(s) 107, 221, 292, 549
Hpy188III TCNNGA 2 cut(s) 163, 281
Hpy8I GTNNAC 4 cut(s) 6, 334, 351, 374
Hpy99I CGWCG 2 cut(s) 365, 479
HpyAV CCTTC 1 cut(s) 592
HpyCH4III ACNGT 3 cut(s) 57, 231, 420
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 401, 462
HpySE526I ACGT 1 cut(s) 273
Kzo9I GATC 3 cut(s) 216, 340, 487
LmnI GCTCC 1 cut(s) 585
MaeI CTAG 1 cut(s) 635
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 231
MalI GATC 3 cut(s) 218, 342, 489
MboI GATC 3 cut(s) 216, 340, 487
MboII GAAGA 1 cut(s) 58
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 516, 582
MluCI AATT 3 cut(s) 190, 355, 480
MnlI CCTC 5 cut(s) 45, 80, 277, 288, 307
Mph1103I ATGCAT 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 3 cut(s) 47, 189, 528
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 2 cut(s) 241, 256
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 2 cut(s) 462, 464
MvnI CGCG 1 cut(s) 90
NciI CCSGG 1 cut(s) 256
NdeII GATC 3 cut(s) 216, 340, 487
NsiI ATGCAT 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 281
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 288
PctI GAATGC 2 cut(s) 462, 464
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 222, 287
Psp124BI GAGCTC 2 cut(s) 516, 582
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 2 cut(s) 269, 373
RsaNI GTAC 2 cut(s) 268, 372
SacI GAGCTC 2 cut(s) 516, 582
SaqAI TTAA 3 cut(s) 47, 189, 528
Sau3AI GATC 3 cut(s) 216, 340, 487
ScaI AGTACT 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 2 cut(s) 516, 582
SetI ASST 9 cut(s) 157, 276, 306, 318, 384, 447, 516, 543, 582
Sfr274I CTCGAG 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 190, 355, 480
SsiI CCGC 3 cut(s) 83, 88, 180
SspMI CTAG 1 cut(s) 635
SstI GAGCTC 2 cut(s) 516, 582
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 3 cut(s) 57, 231, 420
TaiI ACGT 1 cut(s) 276
TaqI TCGA 7 cut(s) 209, 282, 306, 363, 477, 516, 627
TasI AATT 3 cut(s) 190, 355, 480
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 2 cut(s) 222, 287
Tru1I TTAA 3 cut(s) 47, 189, 528
Tru9I TTAA 3 cut(s) 47, 189, 528
TscAI CASTG 2 cut(s) 102, 423
TspDTI ATGAA 5 cut(s) 214, 308, 455, 524, 553
TspGWI ACGGA 2 cut(s) 36, 359
TspRI CASTG 2 cut(s) 102, 423
XapI RAATTY 2 cut(s) 355, 480
XhoI CTCGAG 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 1 cut(s) 635
ZrmI AGTACT 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.