Rmu_ssc0000460.1_g000005

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000460.1
OG0013830
Physical Location & Seq
Forward (+)
24415 .. 26078
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000460.1_g000005.1.cds

Sequence Viewer

Length: 429 bp
atgatccggttcatcttgttacagaaccggcagggcaagacccgtttagctaagtactacgttcctctcgaggattccgagaagcacaaggtcgagtacgaggttcatcgtttggtggtcaacagagatcccaagttcaccaatttcgttgagttccgcacacacaaggtgatctacaggcgatatgccgggttgtttttctcactttgtgttgatataactgataatgagctggcctatttggaatgcattcatctattcgtcgagattttggatcatttcttcagcaacgtttgcgagcttgatttggtcttcaactttcacaaggtctatctgatacttgacgagttcattcttgctggagagctccaagaaacaagcaagaaggcgattatagagagaatgggggaactggaaaagctggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

142

Amino Acids

17.05

Weight (kDa)

5.88

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47830
fragaria_vesca FvH4_2g38510
malus_domestica MD08G1013400.v1.1 MD15G1012800.v1.1
prunus_persica Prupe.1G365900_v2.0.a1
pyrus_communis pycom08g01180 pycom15g01110
rosa_chinensis RchiOBHm_Chr6g0302791
rosa_laevigata RLG00000011137
rosa_multiflora Rmu_ssc0000460.1_g000005
rosa_roxburghii Rroxscaffold_7G00165320
rosa_rugosa Rorug06G0317000
rosa_samantha Rh6AG430400 Rh6BG472200 Rh6CG442900 Rh6DG429600
rosa_wichuraiana Rw6G037280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclI AACGTT 1 cut(s) 291
AclWI GGATC 2 cut(s) 122, 282
AcuI CTGAAG 1 cut(s) 268
AdeI CACNNNGTG 2 cut(s) 169, 209
AfaI GTAC 2 cut(s) 56, 98
AgsI TTSAA 1 cut(s) 316
AluBI AGCT 5 cut(s) 50, 232, 301, 367, 421
AluI AGCT 5 cut(s) 50, 232, 301, 367, 421
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 2 cut(s) 122, 282
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 130, 181
AvaI CYCGRG 1 cut(s) 68
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 369
BcnI CCSGG 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 175
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 6
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 417
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 3 cut(s) 7, 28, 189
BsmI GAATGC 2 cut(s) 249, 251
BsnI GGCC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 4 cut(s) 3, 127, 171, 274
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 236
BspPI GGATC 2 cut(s) 122, 282
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 417
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 4 cut(s) 3, 127, 171, 274
BstAPI GCANNNNNTGC 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 234, 299
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 4 cut(s) 6, 130, 174, 277
BstMBI GATC 4 cut(s) 3, 127, 171, 274
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 234, 299
Cfr10I RCCGGY 1 cut(s) 27
Csp6I GTAC 2 cut(s) 55, 97
CviJI RGCY 6 cut(s) 50, 232, 236, 301, 367, 421
CviKI_1 RGCY 6 cut(s) 50, 232, 236, 301, 367, 421
CviQI GTAC 2 cut(s) 55, 97
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 5, 129, 173, 276
DpnII GATC 4 cut(s) 3, 127, 171, 274
DraIII CACNNNGTG 2 cut(s) 169, 209
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 369
FaiI YATR 3 cut(s) 186, 218, 395
FriOI GRGCYC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 1 cut(s) 236
HapII CCGG 3 cut(s) 7, 28, 189
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 74
HpaII CCGG 3 cut(s) 7, 28, 189
HphI GGTGA 2 cut(s) 130, 181
Hpy166II GTNNAC 2 cut(s) 121, 138
Hpy188I TCNGA 2 cut(s) 79, 336
Hpy188III TCNNGA 2 cut(s) 68, 265
Hpy8I GTNNAC 2 cut(s) 121, 138
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 60, 291
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 60, 291
Kzo9I GATC 4 cut(s) 3, 127, 171, 274
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 9 cut(s) 17, 20, 41, 163, 202, 218, 345, 398, 407
MaeII ACGT 2 cut(s) 60, 291
MaeIII GTNAC 1 cut(s) 18
MalI GATC 4 cut(s) 5, 129, 173, 276
MboI GATC 4 cut(s) 3, 127, 171, 274
MboII GAAGA 2 cut(s) 274, 304
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 1 cut(s) 142
MnlI CCTC 3 cut(s) 64, 75, 94
Mph1103I ATGCAT 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 249
MspI CCGG 3 cut(s) 7, 28, 189
MspR9I CCNGG 1 cut(s) 190
Mva1269I GAATGC 2 cut(s) 249, 251
MwoI GCNNNNNNNGC 1 cut(s) 294
NciI CCSGG 1 cut(s) 190
NdeII GATC 4 cut(s) 3, 127, 171, 274
NsiI ATGCAT 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 75
PctI GAATGC 2 cut(s) 249, 251
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 291
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 2 cut(s) 56, 98
RsaNI GTAC 2 cut(s) 55, 97
SacI GAGCTC 1 cut(s) 369
Sau3AI GATC 4 cut(s) 3, 127, 171, 274
ScaI AGTACT 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 175
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 157
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 2 cut(s) 63, 294
TaqI TCGA 3 cut(s) 69, 93, 264
TasI AATT 1 cut(s) 142
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 95, 242, 340
XhoI CTCGAG 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.