FvH4_2g38510

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013830
Physical Location & Seq
Reverse (-)
27850658 .. 27852922
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38510.t1

Sequence Viewer

Length: 591 bp
ATGTTCACACCCGGTTTCTCTTTTACCTCGGAGCAACGACTCACCGGGGCACAACGAAACGACATCGCAGCAAACGTTAGCAAAATTTGCTCCGAAGGCTTTGGGCCTCTCCTCCGCTTCTGTTCCCCATTTCTCTCTCTAAAATCTTCGACTTCAACAACAATGATCCGGTTCATATTGTTACAGAACCGCCAGGGAAAGACACGTTTAGCTAAGTACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAAGTCGAATACGAGGTTCATCGTTTGGTGGTTAATAGAGATCCCAAGTTCACCAATTTCGTTGAGTTCCGTACACACAAGGTGATCTACAGGCGATATGCCGGGTTGTTTTTCTCGCTGTGTGTTGATATAACTGATAATGAGTTGGCCTATTTGGAATGCATTCATCTATTCGTCGAGATTTTGGATCATTTCTTCAGCAACGTTTGCGAGCTTGATTTGGTCTTCAACTTTCACAAGGTCTATCTGATACTTGACGAATTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAGAAGGCGATTATAGAGAGAATGGGGGAACTGGAAAAGCTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

197

Amino Acids

22.87

Weight (kDa)

6.32

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 55 - 195 1e-53 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47830
fragaria_vesca FvH4_2g38510
malus_domestica MD08G1013400.v1.1 MD15G1012800.v1.1
prunus_persica Prupe.1G365900_v2.0.a1
pyrus_communis pycom08g01180 pycom15g01110
rosa_chinensis RchiOBHm_Chr6g0302791
rosa_laevigata RLG00000011137
rosa_multiflora Rmu_ssc0000460.1_g000005
rosa_roxburghii Rroxscaffold_7G00165320
rosa_rugosa Rorug06G0317000
rosa_samantha Rh6AG430400 Rh6BG472200 Rh6CG442900 Rh6DG429600
rosa_wichuraiana Rw6G037280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 115, 190
AclI AACGTT 2 cut(s) 75, 453
AclWI GGATC 3 cut(s) 160, 284, 444
AcsI RAATTY 2 cut(s) 84, 509
AcuI CTGAAG 1 cut(s) 430
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 2 cut(s) 218, 322
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 2 cut(s) 156, 478
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 4 cut(s) 212, 463, 529, 583
AluI AGCT 4 cut(s) 212, 463, 529, 583
Alw21I GWGCWC 1 cut(s) 531
AlwI GGATC 3 cut(s) 160, 284, 444
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 2 cut(s) 104, 396
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 84, 509
Asp700I GAANNNNTTC 2 cut(s) 411, 513
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 3 cut(s) 12, 46, 352
AsuHPI GGTGA 3 cut(s) 34, 292, 343
AvaI CYCGRG 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 3 cut(s) 12, 46, 352
BfmI CTRYAG 1 cut(s) 337
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 4 cut(s) 12, 46, 194, 352
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 4 cut(s) 12, 46, 194, 352
BpiI GAAGAC 1 cut(s) 466
BpmI CTGGAG 1 cut(s) 543
BpuMI CCSGG 3 cut(s) 12, 46, 352
BsaJI CCNNGG 3 cut(s) 27, 45, 193
BsaWI WCCGGW 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 579
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 27, 45, 193
BseNI ACTGG 1 cut(s) 579
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 2 cut(s) 106, 398
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 4 cut(s) 12, 45, 169, 351
BsmI GAATGC 2 cut(s) 411, 413
BsnI GGCC 2 cut(s) 106, 398
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 52, 531
Bsp143I GATC 4 cut(s) 165, 289, 333, 436
BspACI CCGC 2 cut(s) 115, 190
BspANI GGCC 2 cut(s) 106, 398
BspPI GGATC 3 cut(s) 160, 284, 444
BsrI ACTGG 1 cut(s) 579
BssECI CCNNGG 3 cut(s) 27, 45, 193
BssMI GATC 4 cut(s) 165, 289, 333, 436
Bst2UI CCWGG 1 cut(s) 194
BstAPI GCANNNNNTGC 2 cut(s) 87, 456
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 1 cut(s) 213
BstKTI GATC 4 cut(s) 168, 292, 336, 439
BstMBI GATC 4 cut(s) 165, 289, 333, 436
BstMWI GCNNNNNNNGC 3 cut(s) 87, 96, 456
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 4 cut(s) 10, 44, 192, 350
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 2 cut(s) 106, 398
BtgZI GCGATG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 2 cut(s) 217, 321
CviJI RGCY 7 cut(s) 99, 106, 212, 398, 463, 529, 583
CviKI_1 RGCY 7 cut(s) 99, 106, 212, 398, 463, 529, 583
CviQI GTAC 2 cut(s) 217, 321
DdeI CTNAG 1 cut(s) 213
DpnI GATC 4 cut(s) 167, 291, 335, 438
DpnII GATC 4 cut(s) 165, 289, 333, 436
DraIII CACNNNGTG 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 529
Eco24I GRGCYC 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 531
FaiI YATR 4 cut(s) 176, 348, 380, 557
Fnu4HI GCNGC 1 cut(s) 69
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 106, 398
HapII CCGG 4 cut(s) 12, 45, 169, 351
HinfI GANTC 2 cut(s) 39, 236
HpaII CCGG 4 cut(s) 12, 45, 169, 351
HphI GGTGA 3 cut(s) 34, 292, 343
Hpy166II GTNNAC 3 cut(s) 6, 300, 323
Hpy188I TCNGA 4 cut(s) 31, 94, 241, 498
Hpy188III TCNNGA 2 cut(s) 230, 427
Hpy8I GTNNAC 3 cut(s) 6, 300, 323
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 89, 541
HpyCH4IV ACGT 4 cut(s) 75, 205, 222, 453
HpyCH4V TGCA 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 96, 456
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 4 cut(s) 75, 205, 222, 453
Kzo9I GATC 4 cut(s) 165, 289, 333, 436
LmnI GCTCC 3 cut(s) 31, 95, 534
Lsp1109I GCAGC 1 cut(s) 80
MaeII ACGT 4 cut(s) 75, 205, 222, 453
MaeIII GTNAC 1 cut(s) 180
MalI GATC 4 cut(s) 167, 291, 335, 438
MboI GATC 4 cut(s) 165, 289, 333, 436
MboII GAAGA 3 cut(s) 138, 436, 466
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 52, 531
MluCI AATT 3 cut(s) 84, 304, 509
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 6 cut(s) 37, 117, 122, 226, 237, 256
Mph1103I ATGCAT 1 cut(s) 413
MroXI GAANNNNTTC 2 cut(s) 411, 513
MseI TTAA 1 cut(s) 282
MspI CCGG 4 cut(s) 12, 45, 169, 351
MspR9I CCNGG 4 cut(s) 12, 46, 194, 352
Mva1269I GAATGC 2 cut(s) 411, 413
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 87, 96, 456
NciI CCSGG 3 cut(s) 12, 46, 352
NdeII GATC 4 cut(s) 165, 289, 333, 436
NsiI ATGCAT 1 cut(s) 413
PaeR7I CTCGAG 1 cut(s) 230
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 228, 237
PctI GAATGC 2 cut(s) 411, 413
PdmI GAANNNNTTC 2 cut(s) 411, 513
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 531
Psp1406I AACGTT 2 cut(s) 75, 453
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 218, 322
RsaNI GTAC 2 cut(s) 217, 321
SacI GAGCTC 1 cut(s) 531
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 4 cut(s) 165, 289, 333, 436
Sau96I GGNCC 1 cut(s) 104
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 4 cut(s) 12, 46, 194, 352
SduI GDGCHC 2 cut(s) 52, 531
SfcI CTRYAG 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 3 cut(s) 84, 304, 509
SsiI CCGC 2 cut(s) 115, 190
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 4 cut(s) 10, 44, 192, 350
TaiI ACGT 4 cut(s) 78, 208, 225, 456
TaqI TCGA 4 cut(s) 149, 231, 255, 426
TasI AATT 3 cut(s) 84, 304, 509
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 4 cut(s) 163, 257, 404, 502
TspGWI ACGGA 1 cut(s) 308
XapI RAATTY 2 cut(s) 84, 509
XhoI CTCGAG 1 cut(s) 230
XmnI GAANNNNTTC 2 cut(s) 411, 513
ZrmI AGTACT 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.