Rw6G037280

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013830
Physical Location & Seq
Forward (+)
61667202 .. 61669056
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037280.1

Sequence Viewer

Length: 585 bp
ATGCTTCAAGGGCGACAAGTCACAGCACGCAGTCCTATCGATTTGTATTCTTCACTCTTTCTCTTTACCTCGGAGCTACGACTCACCGGCACAACGAAACGACATCGCAGCAACGTTAGCAAAATTTGTTCCGAAAGCTTTGGGGCCTCCTCCGCCTCTATCCGGTTCATCTTGTTACAGAACCGGCAGGGCAAGACCCGTTTAGCTAAGTACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTCGAGTACGAGGTTCATCGTTTGGTGGTCAACAGAGATCCCAAGTTCACCAATTTCGTTGAGTTCCGCACACACAAGGTGATCTACAGGCGATATGCCGGGTTGTTTTTCTCACTTTGTGTTGATATAACTGATAATGAGCTGGCCTATTTGGAATGCATTCATCTATTCGTCGAGATTTTGGATCATTTCTTCAGCAACGTTTGCGAGCTTGATTTGGTCTTCAACTTTCACAAGGTCTATCTGATACTTGACGAGTTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAGAAGGCGATTATAGAGAGAATGGGGGAACTGGAAAAGCTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

194

Amino Acids

22.73

Weight (kDa)

7.06

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 54 - 193 2.1e-53 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47830
fragaria_vesca FvH4_2g38510
malus_domestica MD08G1013400.v1.1 MD15G1012800.v1.1
prunus_persica Prupe.1G365900_v2.0.a1
pyrus_communis pycom08g01180 pycom15g01110
rosa_chinensis RchiOBHm_Chr6g0302791
rosa_laevigata RLG00000011137
rosa_multiflora Rmu_ssc0000460.1_g000005
rosa_roxburghii Rroxscaffold_7G00165320
rosa_rugosa Rorug06G0317000
rosa_samantha Rh6AG430400 Rh6BG472200 Rh6CG442900 Rh6DG429600
rosa_wichuraiana Rw6G037280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 153, 313
AclI AACGTT 2 cut(s) 114, 447
AclWI GGATC 2 cut(s) 278, 438
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 424
AdeI CACNNNGTG 2 cut(s) 325, 365
AfaI GTAC 2 cut(s) 212, 254
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 8, 472
AluBI AGCT 7 cut(s) 76, 138, 206, 388, 457, 523, 577
AluI AGCT 7 cut(s) 76, 138, 206, 388, 457, 523, 577
Alw21I GWGCWC 1 cut(s) 525
AlwI GGATC 2 cut(s) 278, 438
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 2 cut(s) 144, 390
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 3 cut(s) 76, 286, 337
AvaI CYCGRG 1 cut(s) 224
BanII GRGCYC 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BcnI CCSGG 1 cut(s) 346
BfmI CTRYAG 1 cut(s) 331
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 346
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 346
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse118I RCCGGY 2 cut(s) 86, 183
Bse1I ACTGG 1 cut(s) 573
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 573
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 2 cut(s) 146, 392
BshVI ATCGAT 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 4 cut(s) 87, 163, 184, 345
BslI CCNNNNNNNGG 1 cut(s) 162
BsmI GAATGC 2 cut(s) 405, 407
BsnI GGCC 2 cut(s) 146, 392
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 3 cut(s) 283, 327, 430
BspACI CCGC 2 cut(s) 153, 313
BspANI GGCC 2 cut(s) 146, 392
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 2 cut(s) 278, 438
BsrFI RCCGGY 2 cut(s) 86, 183
BsrI ACTGG 1 cut(s) 573
BssAI RCCGGY 2 cut(s) 86, 183
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 3 cut(s) 283, 327, 430
BstAPI GCANNNNNTGC 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 28, 390, 455
BstDEI CTNAG 1 cut(s) 207
BstKTI GATC 3 cut(s) 286, 330, 433
BstMBI GATC 3 cut(s) 283, 327, 430
BstMWI GCNNNNNNNGC 4 cut(s) 10, 117, 152, 450
BstSCI CCNGG 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 2 cut(s) 146, 392
BsuTUI ATCGAT 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 89
Cac8I GCNNGC 3 cut(s) 28, 390, 455
Cfr10I RCCGGY 2 cut(s) 86, 183
Cfr13I GGNCC 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 211, 253
CviJI RGCY 9 cut(s) 76, 138, 146, 206, 388, 392, 457, 523, 577
CviKI_1 RGCY 9 cut(s) 76, 138, 146, 206, 388, 392, 457, 523, 577
CviQI GTAC 2 cut(s) 211, 253
DdeI CTNAG 1 cut(s) 207
DpnI GATC 3 cut(s) 285, 329, 432
DpnII GATC 3 cut(s) 283, 327, 430
DraIII CACNNNGTG 2 cut(s) 325, 365
EciI GGCGGA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 525
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 424
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 525
FaiI YATR 3 cut(s) 342, 374, 551
Fnu4HI GCNGC 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 146, 392
HapII CCGG 4 cut(s) 87, 163, 184, 345
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 2 cut(s) 81, 230
HpaII CCGG 4 cut(s) 87, 163, 184, 345
HphI GGTGA 3 cut(s) 76, 286, 337
Hpy166II GTNNAC 2 cut(s) 277, 294
Hpy188I TCNGA 4 cut(s) 73, 133, 235, 492
Hpy188III TCNNGA 2 cut(s) 224, 421
Hpy8I GTNNAC 2 cut(s) 277, 294
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 1 cut(s) 535
HpyCH4IV ACGT 3 cut(s) 114, 216, 447
HpyCH4V TGCA 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 117, 152, 450
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 3 cut(s) 114, 216, 447
Kzo9I GATC 3 cut(s) 283, 327, 430
LmnI GCTCC 2 cut(s) 73, 528
Lsp1109I GCAGC 1 cut(s) 120
MaeII ACGT 3 cut(s) 114, 216, 447
MaeIII GTNAC 2 cut(s) 19, 174
MalI GATC 3 cut(s) 285, 329, 432
MboI GATC 3 cut(s) 283, 327, 430
MboII GAAGA 3 cut(s) 42, 430, 460
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 2 cut(s) 123, 298
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 7 cut(s) 79, 157, 160, 166, 220, 231, 250
Mph1103I ATGCAT 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 405
MspI CCGG 4 cut(s) 87, 163, 184, 345
MspR9I CCNGG 1 cut(s) 346
Mva1269I GAATGC 2 cut(s) 405, 407
MwoI GCNNNNNNNGC 4 cut(s) 10, 117, 152, 450
NciI CCSGG 1 cut(s) 346
NdeII GATC 3 cut(s) 283, 327, 430
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 407
PaeR7I CTCGAG 1 cut(s) 224
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 231
PctI GAATGC 2 cut(s) 405, 407
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 525
Psp1406I AACGTT 2 cut(s) 114, 447
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 144
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 2 cut(s) 212, 254
RsaNI GTAC 2 cut(s) 211, 253
SacI GAGCTC 1 cut(s) 525
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 3 cut(s) 283, 327, 430
Sau96I GGNCC 1 cut(s) 144
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 1 cut(s) 525
SfcI CTRYAG 1 cut(s) 331
Sfr274I CTCGAG 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 123, 298
SsiI CCGC 2 cut(s) 153, 313
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 344
TaiI ACGT 3 cut(s) 117, 219, 450
TaqI TCGA 4 cut(s) 39, 225, 249, 420
TasI AATT 2 cut(s) 123, 298
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 230
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 157, 251, 398, 496
XapI RAATTY 1 cut(s) 123
XhoI CTCGAG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 405
ZrmI AGTACT 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.