Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017075

Physical Location & Seq

Genomic Coordinates Forward (+)

18098081 .. 18101732

Gene Structure 3652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGGGAAAGTCTAAATCCGCCACCAAAGTTGTTGCAGAGATTAAGGCCACTAAGCCTTTGAAGAAAGGCAAGAGAGAGCCTGAAGATGATATTGACACCAAAGTGAGTCTTAAGAAGCAGAAGAAAGACGTGATTGCTGCTGTCCAGAAGGAAAAAGCTGTGAAGAAGGTTCCTAAGAAGGTTGAGAGCTCTGATGATTCAGATTCTGAATCTGAGGAAGAGGAGAAGGCTAAGAAAGTCCCAGCCAAGAAGGCTGCTTCAAGCAGTGATGAGTCATCTGATGACTCTTCTTCAGATGATGAACCTGCACCCAAGAAGGCCGTTGCTGCTACTAACGGAACTGTTGCAAAGAAGTCTAAGGATGACTCATCATCATCTGATGATGATTCTTCAGACGAGGAAGTTGCTGTCACCAAGAAGCCCGCAGCTGCTGCTAAAAATGGCTCTGTAAAGGCCAAGAAAGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGACGAACCTGCGAAGAAACCTGCTGCTAAGATTGCCAAGCCAGCTGCTAAGGATTCTTCATCCTCTGATGATGACTCAGATGAGGATTCCGAGGATGAGAAACCTGCTACCAAGAAGGCAGCTCCTGCTGCTGCCAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAAGTGAAGATGAGAAACCTGCCCAGAAAAAGGCTGACACTAAGGCCTCTAAAAAATCGAGTAGTGATGAGTCAAGCGAGTCTGAGGAAGATGAGAGTGAAGACGAGGAGGAAACCCCTAAGAAAAAGAGCTCTGATGTAGAAATGGTTGATGCTGAGAAATCAAGTGCTAAACAGCCAAAGACACCATCCACTCCTGCTGCTGGAGGATCAAAGACACTCTTTGCTGCCAATCTCTCTTTTAACATTGAAAGAGCAGATGTTGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTCTCTACCAACAGAGACGATGGTTCTTTCAGGGGATTTGGCCATGTTGAGTTCGCATCTTCTGAAGAAGCACAGAAGGCGCTTGAATTCCATGGTAGGCCATTGCTCGGTCGTGAGATTCGTCTTGATATTGCTCAGGAGAGAGGTGAGAGAGGCGAGAGACCCGCATTCACTCCACAAAGCGGCAACTTCAGAAGTGGTGGTGATGGTGGTGATGAAAAGAAAATTTTCGTTAAGGGATTTGACGCTTCACTTTCTGAGGATGATATCAAGAACACTTTGAGGGAACATTTCAGTTCATGTGGAGAGATCAAAAATGTATCTGTTCCAATTGACCGTGACACTGGTAACTCCAAAGGAATTGCTTACCTTGAGTTTTCAGAAGGCAAAGAGAAGGCGTTGGAACTAAATGGAAGTGATATGGGAGGAGGATTCTATCTTGTAGTCGATGAGCCTAGACCGAGAGGAGATAGCAGTGGTGGTGGTGGATTTGGAAGGGGCAATGGTCGTTTCGGTAGTGGTGGTGGCAGAGGAAGAGATGGAGGTCGTGGTCGTTTTGGTAGTGGTGGTGGCAGAGGAAGAGATGGAGGTCGTGGTCGTTTTGGTAGTGGTGGTGGCAGGGGAAGTGATCGTGGTCGTGGAAGACCTAGTTTTACTCCCCAAGGTAAGAAGACTACCTTCGGTGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000469 GO:0000478 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0022622 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0070013 GO:0071704 GO:0071840 GO:0080056 GO:0080057 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0090698 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

557

Amino Acids

58.77

Weight (kDa)

5.12

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	300 - 368	2.1e-13	RNA recognition motif
RRM_1	PF00076	403 - 470	2.1e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48920 AT3G18610 AT3G18610 AT3G18610
malus_domestica	MD13G1006400.v1.1 MD16G1001600.v1.1
prunus_persica	Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1
pyrus_communis	pycom13g00530 pycom16g00400
rosa_multiflora	Rmu_co8373157.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	5 cut(s)	313, 511, 523, 607, 703
AciI	CCGC	4 cut(s)	18, 423, 1146, 1164
AclWI	GGATC	1 cut(s)	892
AcoI	YGGCCR	1 cut(s)	1021
AcsI	RAATTY	3 cut(s)	943, 1067, 1206
AcuI	CTGAAG	7 cut(s)	102, 276, 375, 495, 513, 1065, 1156
AfiI	CCNNNNNNNGG	4 cut(s)	706, 878, 1088, 1163
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	5 cut(s)	61, 261, 926, 952, 1067
AjiI	CACGTC	1 cut(s)	130
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	8 cut(s)	158, 189, 428, 539, 617, 645, 807, 959
AluI	AGCT	8 cut(s)	158, 189, 428, 539, 617, 645, 807, 959
Alw21I	GWGCWC	2 cut(s)	191, 809
Alw26I	GTCTC	2 cut(s)	990, 1135
AlwI	GGATC	1 cut(s)	892
AlwNI	CAGNNNCTG	3 cut(s)	206, 431, 620
AoxI	GGCC	6 cut(s)	45, 318, 453, 720, 1021, 1079
ApoI	RAATTY	3 cut(s)	943, 1067, 1206
Asp700I	GAANNNNTTC	2 cut(s)	947, 1208
AspLEI	GCGC	1 cut(s)	1063
AsuHPI	GGTGA	5 cut(s)	403, 974, 1139, 1196, 1205
BalI	TGGCCA	1 cut(s)	1023
BanII	GRGCYC	2 cut(s)	191, 809
BbsI	GAAGAC	4 cut(s)	501, 783, 1630, 1658
Bbv12I	GWGCWC	2 cut(s)	191, 809
BccI	CCATC	5 cut(s)	871, 995, 1181, 1514, 1559
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BcoDI	GTCTC	2 cut(s)	990, 1135
BfaI	CTAG	2 cut(s)	1437, 1629
BfoI	RGCGCY	1 cut(s)	1064
BfrI	CTTAAG	1 cut(s)	110
BfuAI	ACCTGC	5 cut(s)	313, 511, 523, 607, 703
BglI	GCCNNNNNGGC	1 cut(s)	251
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	171
BmsI	GCATC	2 cut(s)	817, 1046
BpiI	GAAGAC	4 cut(s)	501, 783, 1630, 1658
BpmI	CTGGAG	1 cut(s)	900
Bpu10I	CCTNAGC	2 cut(s)	543, 1116
BpuEI	CTTGAG	1 cut(s)	1373
BsaI	GGTCTC	1 cut(s)	1135
BsaJI	CCNNGG	4 cut(s)	585, 630, 1072, 1642
Bsc4I	CCNNNNNNNGG	4 cut(s)	706, 878, 1088, 1163
Bse1I	ACTGG	1 cut(s)	1330
Bse3DI	GCAATG	2 cut(s)	1082, 1489
BseDI	CCNNGG	4 cut(s)	585, 630, 1072, 1642
BseGI	GGATG	5 cut(s)	367, 554, 595, 863, 1249
BseLI	CCNNNNNNNGG	4 cut(s)	706, 878, 1088, 1163
BseMI	GCAATG	2 cut(s)	1082, 1489
BseMII	CTCAG	7 cut(s)	204, 585, 660, 750, 822, 1130, 1230
BseNI	ACTGG	1 cut(s)	1330
BseRI	GAGGAG	4 cut(s)	236, 797, 1422, 1461
BseYI	CCCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	1093
BshFI	GGCC	6 cut(s)	47, 320, 455, 722, 1023, 1081
BsiEI	CGRYCG	1 cut(s)	1093
BsiHKAI	GWGCWC	2 cut(s)	191, 809
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	706, 878, 1088, 1163
BsmAI	GTCTC	2 cut(s)	990, 1135
BsmBI	CGTCTC	1 cut(s)	990
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	1148
BsnI	GGCC	6 cut(s)	47, 320, 455, 722, 1023, 1081
Bso31I	GGTCTC	1 cut(s)	1135
Bsp1286I	GDGCHC	2 cut(s)	191, 809
Bsp143I	GATC	3 cut(s)	884, 1290, 1609
Bsp19I	CCATGG	1 cut(s)	1072
BspACI	CCGC	4 cut(s)	18, 423, 1146, 1164
BspANI	GGCC	6 cut(s)	47, 320, 455, 722, 1023, 1081
BspCNI	CTCAG	7 cut(s)	205, 584, 659, 751, 823, 1129, 1231
BspLI	GGNNCC	1 cut(s)	171
BspMI	ACCTGC	5 cut(s)	313, 511, 523, 607, 703
BspPI	GGATC	1 cut(s)	892
BspTI	CTTAAG	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	1135
BsrDI	GCAATG	2 cut(s)	1082, 1489
BsrI	ACTGG	1 cut(s)	1330
BssECI	CCNNGG	4 cut(s)	585, 630, 1072, 1642
BssMI	GATC	3 cut(s)	884, 1290, 1609
BssT1I	CCWWGG	3 cut(s)	630, 1072, 1642
Bst4CI	ACNGT	2 cut(s)	343, 1319
Bst6I	CTCTTC	4 cut(s)	213, 292, 1510, 1555
BstAFI	CTTAAG	1 cut(s)	110
BstAPI	GCANNNNNTGC	2 cut(s)	431, 620
BstC8I	GCNNGC	3 cut(s)	423, 537, 640
BstDSI	CCRYGG	1 cut(s)	1072
BstF5I	GGATG	5 cut(s)	367, 554, 595, 863, 1249
BstH2I	RGCGCY	1 cut(s)	1064
BstHHI	GCGC	1 cut(s)	1063
BstKTI	GATC	3 cut(s)	887, 1293, 1612
BstMAI	GTCTC	2 cut(s)	990, 1135
BstMBI	GATC	3 cut(s)	884, 1290, 1609
BstMCI	CGRYCG	1 cut(s)	1093
BstV2I	GAAGAC	4 cut(s)	501, 783, 1630, 1658
BsuRI	GGCC	6 cut(s)	47, 320, 455, 722, 1023, 1081
BtgI	CCRYGG	1 cut(s)	1072
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	5 cut(s)	367, 554, 595, 863, 1249
BtsI	GCAGTG	2 cut(s)	271, 1462
BtsIMutI	CAGTG	3 cut(s)	271, 1323, 1462
BveI	ACCTGC	5 cut(s)	313, 511, 523, 607, 703
Cac8I	GCNNGC	3 cut(s)	423, 537, 640
CaiI	CAGNNNCTG	3 cut(s)	206, 431, 620
CfoI	GCGC	1 cut(s)	1063
CseI	GACGC	1 cut(s)	1235
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	3 cut(s)	1025, 1073, 1281
DpnI	GATC	3 cut(s)	886, 1292, 1611
DpnII	GATC	3 cut(s)	884, 1290, 1609
EaeI	YGGCCR	1 cut(s)	1021
Eam1104I	CTCTTC	4 cut(s)	213, 292, 1510, 1555
EarI	CTCTTC	4 cut(s)	213, 292, 1510, 1555
EciI	GGCGGA	1 cut(s)	7
Ecl136II	GAGCTC	2 cut(s)	189, 807
Eco130I	CCWWGG	3 cut(s)	630, 1072, 1642
Eco147I	AGGCCT	1 cut(s)	722
Eco24I	GRGCYC	2 cut(s)	191, 809
Eco31I	GGTCTC	1 cut(s)	1135
Eco32I	GATATC	1 cut(s)	1249
Eco53kI	GAGCTC	2 cut(s)	189, 807
Eco57I	CTGAAG	7 cut(s)	102, 276, 375, 495, 513, 1065, 1156
EcoICRI	GAGCTC	2 cut(s)	189, 807
EcoRI	GAATTC	1 cut(s)	1067
EcoRV	GATATC	1 cut(s)	1249
EcoT14I	CCWWGG	3 cut(s)	630, 1072, 1642
EcoT38I	GRGCYC	2 cut(s)	191, 809
ErhI	CCWWGG	3 cut(s)	630, 1072, 1642
Esp3I	CGTCTC	1 cut(s)	990
FaeI	CATG	3 cut(s)	1028, 1076, 1284
FaiI	YATR	4 cut(s)	1026, 1074, 1282, 1403
FalI	AAGNNNNNCTT	5 cut(s)	93, 125, 881, 913, 1643
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	1024, 1072, 1280
FauI	CCCGC	2 cut(s)	430, 1153
FokI	GGATG	5 cut(s)	374, 541, 602, 850, 1256
FriOI	GRGCYC	2 cut(s)	191, 809
FspBI	CTAG	2 cut(s)	1437, 1629
GlaI	GCGC	1 cut(s)	1062
GsaI	CCCAGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	900
HaeII	RGCGCY	1 cut(s)	1064
HaeIII	GGCC	6 cut(s)	47, 320, 455, 722, 1023, 1081
HgaI	GACGC	1 cut(s)	1235
HhaI	GCGC	1 cut(s)	1063
Hin1II	CATG	3 cut(s)	1028, 1076, 1284
Hin6I	GCGC	1 cut(s)	1061
HinP1I	GCGC	1 cut(s)	1061
HphI	GGTGA	5 cut(s)	403, 974, 1139, 1196, 1205
Hpy188III	TCNNGA	5 cut(s)	145, 1094, 1106, 1118, 1252
HpyCH4III	ACNGT	2 cut(s)	343, 1319
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	35, 308, 347, 638
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	1028, 1076, 1284
HspAI	GCGC	1 cut(s)	1061
Kzo9I	GATC	3 cut(s)	884, 1290, 1609
LmnI	GCTCC	1 cut(s)	622
LweI	GCATC	2 cut(s)	817, 1046
MaeI	CTAG	2 cut(s)	1437, 1629
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	4 cut(s)	409, 1319, 1328, 1664
MalI	GATC	3 cut(s)	886, 1292, 1611
MboI	GATC	3 cut(s)	884, 1290, 1609
MfeI	CAATTG	1 cut(s)	1311
MhlI	GDGCHC	2 cut(s)	191, 809
MlsI	TGGCCA	1 cut(s)	1023
MluCI	AATT	5 cut(s)	943, 1067, 1206, 1311, 1341
MluNI	TGGCCA	1 cut(s)	1023
MlyI	GAGTC	7 cut(s)	115, 278, 281, 359, 563, 755, 764
MmeI	TCCRAC	1 cut(s)	1362
Mox20I	TGGCCA	1 cut(s)	1023
MroXI	GAANNNNTTC	2 cut(s)	947, 1208
MscI	TGGCCA	1 cut(s)	1023
MseI	TTAA	4 cut(s)	42, 111, 918, 1215
MslI	CAYNNNNRTG	1 cut(s)	101
Msp20I	TGGCCA	1 cut(s)	1023
MspA1I	CMGCKG	2 cut(s)	428, 539
MspCI	CTTAAG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	1311
Mva1269I	GAATGC	1 cut(s)	1148
NcoI	CCATGG	1 cut(s)	1072
NdeII	GATC	3 cut(s)	884, 1290, 1609
NlaIII	CATG	3 cut(s)	1028, 1076, 1284
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	3 cut(s)	409, 1319, 1664
OliI	CACNNNNGTG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	1099
PctI	GAATGC	1 cut(s)	1148
PdmI	GAANNNNTTC	2 cut(s)	947, 1208
PleI	GAGTC	7 cut(s)	114, 278, 280, 359, 563, 754, 763
PpsI	GAGTC	7 cut(s)	114, 278, 280, 359, 563, 754, 763
Psp124BI	GAGCTC	2 cut(s)	191, 809
PspFI	CCCAGC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	171
PstNI	CAGNNNCTG	3 cut(s)	206, 431, 620
PvuII	CAGCTG	2 cut(s)	428, 539
RseI	CAYNNNNRTG	1 cut(s)	101
SacI	GAGCTC	2 cut(s)	191, 809
SaqAI	TTAA	4 cut(s)	42, 111, 918, 1215
Sau3AI	GATC	3 cut(s)	884, 1290, 1609
SchI	GAGTC	7 cut(s)	115, 278, 281, 359, 563, 755, 764
SduI	GDGCHC	2 cut(s)	191, 809
SfaNI	GCATC	2 cut(s)	817, 1046
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	110, 1352
SmoI	CTYRAG	2 cut(s)	110, 1352
Sse9I	AATT	5 cut(s)	943, 1067, 1206, 1311, 1341
SseBI	AGGCCT	1 cut(s)	722
SsiI	CCGC	4 cut(s)	18, 423, 1146, 1164
SspMI	CTAG	2 cut(s)	1437, 1629
SstI	GAGCTC	2 cut(s)	191, 809
StuI	AGGCCT	1 cut(s)	722
StyI	CCWWGG	3 cut(s)	630, 1072, 1642
TaaI	ACNGT	2 cut(s)	343, 1319
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	734, 1428
TaqII	GACCGA	2 cut(s)	1079, 1456
TasI	AATT	5 cut(s)	943, 1067, 1206, 1311, 1341
TauI	GCSGC	1 cut(s)	1167
Tru1I	TTAA	4 cut(s)	42, 111, 918, 1215
Tru9I	TTAA	4 cut(s)	42, 111, 918, 1215
TscAI	CASTG	3 cut(s)	271, 1330, 1462
TseFI	GTSAC	3 cut(s)	409, 1319, 1664
Tsp45I	GTSAC	3 cut(s)	409, 1319, 1664
TspDTI	ATGAA	7 cut(s)	315, 474, 543, 642, 675, 1212, 1269
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	3 cut(s)	271, 1330, 1462
Vha464I	CTTAAG	1 cut(s)	110
XapI	RAATTY	3 cut(s)	943, 1067, 1206
XmnI	GAANNNNTTC	2 cut(s)	947, 1208
XspI	CTAG	2 cut(s)	1437, 1629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.