Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8373157.1

Orthogroup ID

OG0017075

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1104

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8373157.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggttcgtttgaaggtccctgctaaagctgccccaaaggaaagtagttcagaggaggagagtgatgaggatagttcagatgaagaatcagaagaagaggcaaagactccaaagaaaaaggactctgatgtagagatggtagatgctcaatcaaaatccgaaaagaaagctcctaaaacccctactactcctgaaacatcgtcgtctaagactttgtttgccggcaatttgtcattcaagattgaacaaagagatgtggaagaattcttcaaggatgttgcccaagttgttgaggtccgtttctcctctgatcaagatggacagttcaggggatatggacatgtagagtttgccagtgcagaagatgcccaaaaggctctggagttgaatggttcagatttgttgggtcgtgcggtgagacttgatctggctcgtgaaaggggcgaaaggggtgcttatactcctcacagcggcaaagagagcaactcatatcagaagggaggacaaggtcagtcacagacaatttttgtacgaggatttgatacaaaccaaggggaggacgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

188

Amino Acids

20.73

Weight (kDa)

4.76

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48920 AT3G18610 AT3G18610 AT3G18610
malus_domestica	MD13G1006400.v1.1 MD16G1001600.v1.1
prunus_persica	Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1
pyrus_communis	pycom13g00530 pycom16g00400
rosa_multiflora	Rmu_co8373157.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	413, 471
AcsI	RAATTY	1 cut(s)	263
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	470, 556
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	5 cut(s)	13, 238, 245, 271, 388
AluBI	AGCT	2 cut(s)	29, 170
AluI	AGCT	2 cut(s)	29, 170
Alw26I	GTCTC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	16, 295
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	2 cut(s)	16, 295
BauI	CACGAG	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	130, 311
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	30, 472
BlsI	GCNGC	2 cut(s)	31, 473
Bme18I	GGWCC	2 cut(s)	16, 295
BmgT120I	GGNCC	2 cut(s)	16, 295
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	133, 355
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpmI	CTGGAG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 556
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	470, 556
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	4 cut(s)	68, 71, 295, 453
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	470, 556
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	2
Bsp143I	GATC	2 cut(s)	310, 424
BspACI	CCGC	2 cut(s)	413, 471
BspLI	GGNNCC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	2 cut(s)	310, 424
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	550
Bst2BI	CACGAG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	313, 427
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	310, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 365, 374, 480
BstNSI	RCATGY	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	16, 295
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	4 cut(s)	29, 170, 377, 431
CviKI_1	RGCY	4 cut(s)	29, 170, 377, 431
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	312, 426
DpnII	GATC	2 cut(s)	310, 424
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	550
Eco47I	GGWCC	2 cut(s)	16, 295
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	1 cut(s)	344
FaiI	YATR	4 cut(s)	336, 342, 459, 490
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	30, 472
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	30, 472
GluI	GCNGC	2 cut(s)	30, 472
GsuI	CTGGAG	1 cut(s)	401
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	1 cut(s)	344
HinfI	GANTC	3 cut(s)	86, 106, 122
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	427
Hpy188I	TCNGA	8 cut(s)	52, 79, 91, 127, 160, 310, 397, 495
Hpy188III	TCNNGA	5 cut(s)	191, 238, 314, 380, 434
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	7, 490
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 365, 374, 480
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	344
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	310, 424
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	7 cut(s)	33, 204, 235, 313, 365, 367, 413
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	133, 355
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	2 cut(s)	312, 426
MboI	GATC	2 cut(s)	310, 424
MboII	GAAGA	6 cut(s)	95, 104, 107, 259, 272, 374
MluCI	AATT	3 cut(s)	226, 263, 522
MlyI	GAGTC	2 cut(s)	100, 116
MroNI	GCCGGC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	471
MspI	CCGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	29, 365, 374, 480
NaeI	GCCGGC	1 cut(s)	223
NdeII	GATC	2 cut(s)	310, 424
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	513
NspI	RCATGY	1 cut(s)	344
PciI	ACATGT	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	86
PflFI	GACNNNGTC	1 cut(s)	507
PkrI	GCNGC	2 cut(s)	31, 473
PleI	GAGTC	2 cut(s)	100, 116
PpsI	GAGTC	2 cut(s)	100, 116
PpuMI	RGGWCCY	1 cut(s)	16
PscI	ACATGT	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	16, 295
PspPPI	RGGWCCY	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	507
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SatI	GCNGC	2 cut(s)	30, 472
Sau3AI	GATC	2 cut(s)	310, 424
Sau96I	GGNCC	2 cut(s)	16, 295
SchI	GAGTC	2 cut(s)	100, 116
SetI	ASST	5 cut(s)	18, 31, 172, 297, 511
SfaNI	GCATC	2 cut(s)	133, 355
SinI	GGWCC	2 cut(s)	16, 295
Sse9I	AATT	3 cut(s)	226, 263, 522
SsiI	CCGC	2 cut(s)	413, 471
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	1 cut(s)	324
TasI	AATT	3 cut(s)	226, 263, 522
TauI	GCSGC	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	86
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	507
VpaK11BI	GGWCC	2 cut(s)	16, 295
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.