AT3G18610

nucleolin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
6404053 .. 6407946
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18610.1

Sequence Viewer

Length: 1911 bp
ATGGGCAAGTCTAGTAAGAAATCCGTCACCGAAGTTGAAACACCTGCTTCAATGACAAAGCCACTCAAGAAAGGTAAGAGAGATGCGGAAGAGGATTTGGACATGCAAGTTACGAAGAAGCAGAAGAAAGAGTTGATTGATGTTGTTCAGAAGGAGAAAGCTGAGAAAACGGTACCTAAGAAGGTAGAGAGTAGCAGTTCTGACGCTTCTGATTCTGATGAAGAGGAGAAGACTAAGGAAACTCCATCTAAGTTGAAGGATGAGTCTTCTTCTGAAGAGGAGGATGACTCTTCTTCAGATGAGGAAATTGCGCCTGCGAAGAAGCGACCAGAACCTATTAAGAAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGTCCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCTAAGATAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGTCCCTATGAAGAAGCAAACAGCAGTCCTTGAGAAGGCTAAGGCAGAGAGCAGTTCATCCGACGATGGATCTTCTTCGGACGAGGAACCCACCCCTGCAAAGAAAGAACCAATCGTTGTTAAGAAAGACAGCTCAGATGAATCTTCTTCAGATGAGGAAACCCCCGTTGTGAAGAAGAAGCCAACAACAGTTGTTAAGGATGCCAAGGCAGAAAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGATGAACCAACACCTGCCAAGAAGCCAACAGTTGTTAAGAATGCTAAACCAGCTGCAAAAGATTCATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACGAAGAAGGCTAAAGTTTCATCAAAAACTTCTAAACAAGAAAGCTCTAGTGATGAATCTAGTGATGAATCTGATAAGGAGGAGAGTAAAGATGAGAAAGTGACACCAAAGAAAAAGGATTCTGATGTTGAAATGGTGGATGCAGAGCAGAAATCTAATGCAAAGCAGCCGAAGACACCTACTAATCAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTATCAAATTGCGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTCGATGTTAGACTTTCTTCATTTGATGATGGGAGTTTTAAGGGATATGGGCATATTGAATTTGCTTCTCCAGAAGAAGCTCAGAAGGCATTGGAAATGAACGGTAAATTGTTACTAGGCCGCGATGTTCGTCTTGATCTTGCTAACGAGAGGGGTACTCCACGAAACAGCAATCCTGGTCGCAAAGGAGAAGGAAGCCAAAGTCGAACGATTTACGTTAGAGGATTCAGTTCTTCTCTTGGCGAAGATGAAATCAAGAAAGAGTTGAGAAGTCATTTTAGCAAGTGTGGAGAGGTGACAAGGGTTCATGTTCCAACAGATCGTGAGACTGGTGCTTCCAGGGGCTTTGCTTACATAGATTTGACGAGTGGATTCGATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGAGGGAACATACATGTGGAAGAGTCTAGACCAAGAGATAGTGATGAGGGCCGTTCCTCAAACAGAGCACCTGCTAGAGGAGCACCTCGTGGCCGTCACTCAGATAGAGCACCTCGTGGAGGACGTTTCTCGGATAGAGCACCACGTGGACGTCACTCAGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGAAGAGGACCCAGCAAACCAAGTGTAATGGAATCATCCAAAGGGACGAAGACGGTCTTTAATGATGAAGAGTAG

Protein Analysis

636

Amino Acids

68.99

Weight (kDa)

5.03

Isoelectric Point (pI)

60.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 386 - 453 1.8e-14 RNA recognition motif
RRM_1 PF00076 482 - 551 5e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 52, 847, 1720
AatII GACGTC 1 cut(s) 1795
Acc36I ACCTGC 3 cut(s) 52, 847, 1720
Acc65I GGTACC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 1626
AccII CGCG 2 cut(s) 1353, 1834
AciI CCGC 3 cut(s) 86, 1351, 1626
AclWI GGATC 2 cut(s) 655, 1153
AcoI YGGCCR 2 cut(s) 1732, 1819
AcsI RAATTY 2 cut(s) 1204, 1289
AcuI CTGAAG 6 cut(s) 279, 294, 369, 459, 549, 711
AcvI CACGTG 1 cut(s) 1787
AcyI GRCGYC 1 cut(s) 1792
AdeI CACNNNGTG 4 cut(s) 1730, 1757, 1787, 1817
AfaI GTAC 3 cut(s) 174, 1387, 1831
AfiI CCNNNNNNNGG 5 cut(s) 433, 523, 613, 1718, 1760
AflIII ACRYGT 2 cut(s) 1654, 1832
AgsI TTSAA 6 cut(s) 38, 51, 256, 1076, 1213, 1289
AjnI CCWGG 2 cut(s) 1405, 1568
AluBI AGCT 9 cut(s) 161, 363, 453, 543, 711, 878, 990, 1220, 1310
AluI AGCT 9 cut(s) 161, 363, 453, 543, 711, 878, 990, 1220, 1310
Alw21I GWGCWC 5 cut(s) 1711, 1726, 1753, 1783, 1813
Alw26I GTCTC 1 cut(s) 1550
AlwI GGATC 2 cut(s) 655, 1153
AoxI GGCC 4 cut(s) 1348, 1690, 1732, 1819
ApeKI GCWGC 5 cut(s) 360, 450, 540, 878, 1111
ApoI RAATTY 2 cut(s) 1204, 1289
Asp700I GAANNNNTTC 2 cut(s) 1171, 1208
Asp718I GGTACC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 1690, 1844
AsuHPI GGTGA 3 cut(s) 19, 1235, 1537
AvaII GGWCC 1 cut(s) 1844
BanI GGYRCC 1 cut(s) 172
BauI CACGAG 3 cut(s) 1728, 1755, 1815
BbrPI CACGTG 1 cut(s) 1787
BbsI GAAGAC 4 cut(s) 236, 258, 1124, 1892
Bbv12I GWGCWC 5 cut(s) 1711, 1726, 1753, 1783, 1813
BbvI GCAGC 5 cut(s) 372, 462, 552, 865, 1123
BccI CCATC 3 cut(s) 253, 638, 1253
BceAI ACGGC 3 cut(s) 1677, 1719, 1806
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 2 cut(s) 1407, 1570
BcoDI GTCTC 1 cut(s) 1550
BfaI CTAG 6 cut(s) 12, 993, 1005, 1346, 1668, 1716
BfuAI ACCTGC 3 cut(s) 52, 847, 1720
BglII AGATCT 1 cut(s) 1190
BisI GCNGC 6 cut(s) 361, 451, 541, 879, 1112, 1351
BlsI GCNGC 6 cut(s) 362, 452, 542, 880, 1113, 1352
Bme1390I CCNGG 2 cut(s) 1407, 1570
Bme18I GGWCC 1 cut(s) 1844
BmgT120I GGNCC 2 cut(s) 1690, 1844
BmiI GGNNCC 3 cut(s) 174, 666, 1846
BmrFI CCNGG 2 cut(s) 1407, 1570
BmsI GCATC 3 cut(s) 73, 769, 1075
BpiI GAAGAC 4 cut(s) 236, 258, 1124, 1892
BpmI CTGGAG 1 cut(s) 1284
Bpu10I CCTNAGC 3 cut(s) 348, 438, 618
BpuEI CTTGAG 4 cut(s) 50, 449, 539, 629
BsaAI YACGTR 1 cut(s) 1787
BsaHI GRCGYC 1 cut(s) 1792
BsaJI CCNNGG 2 cut(s) 783, 1569
Bsc4I CCNNNNNNNGG 5 cut(s) 433, 523, 613, 1718, 1760
Bse1I ACTGG 1 cut(s) 1564
BseBI CCWGG 2 cut(s) 1407, 1570
BseDI CCNNGG 2 cut(s) 783, 1569
BseGI GGATG 7 cut(s) 265, 289, 635, 784, 893, 1090, 1871
BseLI CCNNNNNNNGG 5 cut(s) 433, 523, 613, 1718, 1760
BseMII CTCAG 8 cut(s) 153, 726, 912, 1151, 1325, 1613, 1755, 1812
BseNI ACTGG 1 cut(s) 1564
BseRI GAGGAG 8 cut(s) 239, 293, 821, 932, 1040, 1656, 1734, 1821
BseXI GCAGC 5 cut(s) 372, 462, 552, 865, 1123
BseYI CCCAGC 1 cut(s) 1847
Bsh1236I CGCG 2 cut(s) 1353, 1834
BshFI GGCC 4 cut(s) 1350, 1692, 1734, 1821
BshNI GGYRCC 1 cut(s) 172
BsiHKAI GWGCWC 5 cut(s) 1711, 1726, 1753, 1783, 1813
BslFI GGGAC 3 cut(s) 476, 566, 1894
BslI CCNNNNNNNGG 5 cut(s) 433, 523, 613, 1718, 1760
BsmAI GTCTC 1 cut(s) 1550
BsmFI GGGAC 3 cut(s) 476, 566, 1894
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 4 cut(s) 1350, 1692, 1734, 1821
Bsp1286I GDGCHC 5 cut(s) 1711, 1726, 1753, 1783, 1813
Bsp143I GATC 5 cut(s) 647, 1145, 1190, 1366, 1549
BspACI CCGC 3 cut(s) 86, 1351, 1626
BspANI GGCC 4 cut(s) 1350, 1692, 1734, 1821
BspCNI CTCAG 8 cut(s) 154, 725, 911, 1150, 1324, 1614, 1754, 1811
BspFNI CGCG 2 cut(s) 1353, 1834
BspLI GGNNCC 3 cut(s) 174, 666, 1846
BspMI ACCTGC 3 cut(s) 52, 847, 1720
BspPI GGATC 2 cut(s) 655, 1153
BspT107I GGYRCC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 1626
BsrI ACTGG 1 cut(s) 1564
BssECI CCNNGG 2 cut(s) 783, 1569
BssMI GATC 5 cut(s) 647, 1145, 1190, 1366, 1549
BssNI GRCGYC 1 cut(s) 1792
BssSI CACGAG 3 cut(s) 1728, 1755, 1815
BssT1I CCWWGG 1 cut(s) 783
Bst2BI CACGAG 3 cut(s) 1728, 1755, 1815
Bst2UI CCWGG 2 cut(s) 1407, 1570
Bst4CI ACNGT 7 cut(s) 172, 490, 580, 769, 856, 1334, 1891
Bst6I CTCTTC 7 cut(s) 84, 216, 270, 295, 1656, 1834, 1899
BstACI GRCGYC 1 cut(s) 1792
BstBAI YACGTR 1 cut(s) 1787
BstC8I GCNNGC 1 cut(s) 315
BstENI CCTNNNNNAGG 5 cut(s) 431, 521, 611, 1716, 1758
BstF5I GGATG 7 cut(s) 265, 289, 635, 784, 893, 1090, 1871
BstFNI CGCG 2 cut(s) 1353, 1834
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 5 cut(s) 650, 1148, 1193, 1369, 1552
BstMAI GTCTC 1 cut(s) 1550
BstMBI GATC 5 cut(s) 647, 1145, 1190, 1366, 1549
BstMWI GCNNNNNNNGC 3 cut(s) 875, 1316, 1721
BstNI CCWGG 2 cut(s) 1407, 1570
BstNSI RCATGY 2 cut(s) 106, 1658
BstSCI CCNGG 2 cut(s) 1405, 1568
BstUI CGCG 2 cut(s) 1353, 1834
BstV1I GCAGC 5 cut(s) 372, 462, 552, 865, 1123
BstV2I GAAGAC 4 cut(s) 236, 258, 1124, 1892
BstX2I RGATCY 2 cut(s) 647, 1190
BstYI RGATCY 2 cut(s) 647, 1190
BsuRI GGCC 4 cut(s) 1350, 1692, 1734, 1821
BtgZI GCGATG 1 cut(s) 1368
BtsCI GGATG 7 cut(s) 265, 289, 635, 784, 893, 1090, 1871
BveI ACCTGC 3 cut(s) 52, 847, 1720
Cac8I GCNNGC 1 cut(s) 315
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 1690, 1844
CseI GACGC 2 cut(s) 212, 1162
Csp6I GTAC 3 cut(s) 173, 1386, 1830
CviAII CATG 3 cut(s) 103, 1538, 1655
CviQI GTAC 3 cut(s) 173, 1386, 1830
DpnI GATC 5 cut(s) 649, 1147, 1192, 1368, 1551
DpnII GATC 5 cut(s) 647, 1145, 1190, 1366, 1549
DraIII CACNNNGTG 4 cut(s) 1730, 1757, 1787, 1817
EaeI YGGCCR 2 cut(s) 1732, 1819
Eam1104I CTCTTC 7 cut(s) 84, 216, 270, 295, 1656, 1834, 1899
EarI CTCTTC 7 cut(s) 84, 216, 270, 295, 1656, 1834, 1899
Eco130I CCWWGG 1 cut(s) 783
Eco47I GGWCC 1 cut(s) 1844
Eco57I CTGAAG 6 cut(s) 279, 294, 369, 459, 549, 711
Eco72I CACGTG 1 cut(s) 1787
EcoNI CCTNNNNNAGG 5 cut(s) 431, 521, 611, 1716, 1758
EcoO109I RGGNCCY 1 cut(s) 1844
EcoRII CCWGG 2 cut(s) 1405, 1568
EcoT14I CCWWGG 1 cut(s) 783
ErhI CCWWGG 1 cut(s) 783
FaeI CATG 3 cut(s) 106, 1541, 1658
FaiI YATR 9 cut(s) 104, 587, 1199, 1278, 1284, 1539, 1586, 1652, 1656
FalI AAGNNNNNCTT 2 cut(s) 1877, 1909
FaqI GGGAC 3 cut(s) 476, 566, 1894
FatI CATG 3 cut(s) 102, 1537, 1654
Fnu4HI GCNGC 6 cut(s) 361, 451, 541, 879, 1112, 1351
FokI GGATG 7 cut(s) 272, 296, 622, 791, 880, 1097, 1858
Fsp4HI GCNGC 6 cut(s) 361, 451, 541, 879, 1112, 1351
FspBI CTAG 6 cut(s) 12, 993, 1005, 1346, 1668, 1716
GlaI GCGC 1 cut(s) 312
GluI GCNGC 6 cut(s) 361, 451, 541, 879, 1112, 1351
GsaI CCCAGC 1 cut(s) 1851
GsuI CTGGAG 1 cut(s) 1284
HaeIII GGCC 4 cut(s) 1350, 1692, 1734, 1821
HgaI GACGC 2 cut(s) 212, 1162
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 1792
Hin1II CATG 3 cut(s) 106, 1541, 1658
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HphI GGTGA 3 cut(s) 19, 1235, 1537
Hpy166II GTNNAC 1 cut(s) 1790
Hpy188III TCNNGA 6 cut(s) 67, 1301, 1364, 1486, 1553, 1668
Hpy8I GTNNAC 1 cut(s) 1790
Hpy99I CGWCG 1 cut(s) 644
HpyCH4III ACNGT 7 cut(s) 172, 490, 580, 769, 856, 1334, 1891
HpyCH4IV ACGT 4 cut(s) 1446, 1765, 1786, 1792
HpyCH4V TGCA 6 cut(s) 106, 677, 881, 1088, 1106, 1618
HpyF10VI GCNNNNNNNGC 3 cut(s) 875, 1316, 1721
HpySE526I ACGT 4 cut(s) 1446, 1765, 1786, 1792
Hsp92I GRCGYC 1 cut(s) 1792
Hsp92II CATG 3 cut(s) 106, 1541, 1658
HspAI GCGC 1 cut(s) 311
KpnI GGTACC 1 cut(s) 176
Kzo9I GATC 5 cut(s) 647, 1145, 1190, 1366, 1549
LmnI GCTCC 2 cut(s) 1721, 1808
Lsp1109I GCAGC 5 cut(s) 372, 462, 552, 865, 1123
LweI GCATC 3 cut(s) 73, 769, 1075
MaeI CTAG 6 cut(s) 12, 993, 1005, 1346, 1668, 1716
MaeII ACGT 4 cut(s) 1446, 1765, 1786, 1792
MaeIII GTNAC 7 cut(s) 25, 109, 1045, 1341, 1525, 1736, 1793
MalI GATC 5 cut(s) 649, 1147, 1192, 1368, 1551
MbiI CCGCTC 1 cut(s) 1626
MboI GATC 5 cut(s) 647, 1145, 1190, 1366, 1549
MflI RGATCY 2 cut(s) 647, 1190
MhlI GDGCHC 5 cut(s) 1711, 1726, 1753, 1783, 1813
MluCI AATT 6 cut(s) 306, 1182, 1204, 1289, 1337, 1635
MluI ACGCGT 1 cut(s) 1832
MlyI GAGTC 4 cut(s) 272, 281, 1129, 1673
MmeI TCCRAC 2 cut(s) 663, 1568
MroXI GAANNNNTTC 2 cut(s) 1171, 1208
MseI TTAA 6 cut(s) 339, 699, 774, 861, 1269, 1896
MslI CAYNNNNRTG 1 cut(s) 1655
MspA1I CMGCKG 1 cut(s) 878
MspR9I CCNGG 2 cut(s) 1407, 1570
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 2 cut(s) 1407, 1570
MvnI CGCG 2 cut(s) 1353, 1834
MwoI GCNNNNNNNGC 3 cut(s) 875, 1316, 1721
NdeII GATC 5 cut(s) 647, 1145, 1190, 1366, 1549
NlaIII CATG 3 cut(s) 106, 1541, 1658
NlaIV GGNNCC 3 cut(s) 174, 666, 1846
NmuCI GTSAC 5 cut(s) 25, 1045, 1525, 1736, 1793
NspI RCATGY 2 cut(s) 106, 1658
PaqCI CACCTGC 3 cut(s) 52, 847, 1720
PciI ACATGT 1 cut(s) 1654
PcsI WCGNNNNNNNCGW 1 cut(s) 1762
PctI GAATGC 1 cut(s) 871
PdmI GAANNNNTTC 2 cut(s) 1171, 1208
PkrI GCNGC 6 cut(s) 362, 452, 542, 880, 1113, 1352
PleI GAGTC 4 cut(s) 271, 281, 1129, 1672
PmaCI CACGTG 1 cut(s) 1787
PmlI CACGTG 1 cut(s) 1787
PpsI GAGTC 4 cut(s) 271, 281, 1129, 1672
Ppu21I YACGTR 1 cut(s) 1787
PpuMI RGGWCCY 1 cut(s) 1844
PscI ACATGT 1 cut(s) 1654
Psp5II RGGWCCY 1 cut(s) 1844
Psp6I CCWGG 2 cut(s) 1405, 1568
PspCI CACGTG 1 cut(s) 1787
PspFI CCCAGC 1 cut(s) 1847
PspGI CCWGG 2 cut(s) 1405, 1568
PspN4I GGNNCC 3 cut(s) 174, 666, 1846
PspPI GGNCC 2 cut(s) 1690, 1844
PspPPI RGGWCCY 1 cut(s) 1844
PsuI RGATCY 2 cut(s) 647, 1190
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 3 cut(s) 174, 1387, 1831
RsaNI GTAC 3 cut(s) 173, 1386, 1830
RseI CAYNNNNRTG 1 cut(s) 1655
SaqAI TTAA 6 cut(s) 339, 699, 774, 861, 1269, 1896
SatI GCNGC 6 cut(s) 361, 451, 541, 879, 1112, 1351
Sau3AI GATC 5 cut(s) 647, 1145, 1190, 1366, 1549
Sau96I GGNCC 2 cut(s) 1690, 1844
SchI GAGTC 4 cut(s) 272, 281, 1129, 1673
ScrFI CCNGG 2 cut(s) 1407, 1570
SduI GDGCHC 5 cut(s) 1711, 1726, 1753, 1783, 1813
SfaNI GCATC 3 cut(s) 73, 769, 1075
SinI GGWCC 1 cut(s) 1844
SmiMI CAYNNNNRTG 1 cut(s) 1655
SmlI CTYRAG 4 cut(s) 65, 428, 518, 608
SmoI CTYRAG 4 cut(s) 65, 428, 518, 608
Sse9I AATT 6 cut(s) 306, 1182, 1204, 1289, 1337, 1635
SsiI CCGC 3 cut(s) 86, 1351, 1626
SspMI CTAG 6 cut(s) 12, 993, 1005, 1346, 1668, 1716
StyD4I CCNGG 2 cut(s) 1405, 1568
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 7 cut(s) 172, 490, 580, 769, 856, 1334, 1891
TaiI ACGT 4 cut(s) 1449, 1768, 1789, 1795
TaqI TCGA 3 cut(s) 1233, 1435, 1605
TasI AATT 6 cut(s) 306, 1182, 1204, 1289, 1337, 1635
TauI GCSGC 1 cut(s) 1353
Tru1I TTAA 6 cut(s) 339, 699, 774, 861, 1269, 1896
Tru9I TTAA 6 cut(s) 339, 699, 774, 861, 1269, 1896
TseFI GTSAC 5 cut(s) 25, 1045, 1525, 1736, 1793
TseI GCWGC 5 cut(s) 360, 450, 540, 878, 1111
Tsp45I GTSAC 5 cut(s) 25, 1045, 1525, 1736, 1793
TspGWI ACGGA 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 1844
XagI CCTNNNNNAGG 5 cut(s) 431, 521, 611, 1716, 1758
XapI RAATTY 2 cut(s) 1204, 1289
XbaI TCTAGA 1 cut(s) 1667
XceI RCATGY 2 cut(s) 106, 1658
XmnI GAANNNNTTC 2 cut(s) 1171, 1208
XspI CTAG 6 cut(s) 12, 993, 1005, 1346, 1668, 1716
ZraI GACGTC 1 cut(s) 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.