pycom16g00400

RNA recognition motif

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
236791 .. 240240
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00400.9

Sequence Viewer

Length: 1377 bp
ATGGGCAAATCAAGCAAGAAATCCGCCACCAAAGTTGAGGCTCCCGCTGTAGTTGTTCCAGCTCCTAAGTCTGGAAAGAAAGGTAAGAGAGGAGCCGGGAACGAAATAGAGAAGGTTGTGAGCGCAAAGAAGCAGAAGGTTGATGAGGGTGTAGCGCAGGGCATTCAGAAGAAGAAAGTCGAAGCAAAGACTCAGAAGAAGAAGAAAGTGGAAACTAGTAGTTCCGAGGAGGAGTCCGATGTGTCTTCTGACCCTGATGTGAAGGCTCCTAAATCTAAGGTAGCTGCTCAGAATGGTCTAACTGCTGCTATAAAGAAGAAAGAAGTCTCAGCCGGAAGCTCAGATGAGAGTAGCGATGAATCTGAAGATGATGATGAAACCCCTGCAAAGGTTACTGGTCAAAGGCCTGCTGCAGCTGCTAAGAAAGGTCCATCAGTGGCTGTTAAGAAGGCAGACACTAGCAGCTCTGGATCTGAAGATGAGGGTACCACAAAGGATGAGGATTCAATTGACTCTTCTGACTCTGATGAGGATATGGAGGATACTGGCACTGATGGTTCAGAAGAGGAAGTCAGTTCTGACAAAGAAGAGGATGATGAACAGCCCAAAACCCCCAAAACTCCAGTTACTTCTTCTAAGACGCTGTTCGTTGGAAACCTGAACTTCCGTATCGAGGAACATGATGTGAGGAATTTCTTCAAAGATGCCGGCGAAGTTGTTGATGTCCGTTTTGCCTCAGATCCTGAAGGGAAGTTCAAGGGCTTTGGGCATGTGGAGTTTGCCACAGCAGAAGAAGCAAAGAAGGCTCTTGAATTTAATGGTTTAGAATTGCTTGGTCGTGATGTCAAACTTGATCTGGCTCGTGAAAGGGGTGAAAAGGGTGCTTATACCCCCACCGGGAGTGAGAGCAACTCATATCAGAAGGGACCACGTGGTGCGTCCAAAACAATATTTATTCGAGGTTTCGACAGCTCTCTCGGGGAGGATGAGATAAGGAGCTCCTTACAAGAAGTTTTTAGTTCTTGTGGTGAGATAACAAGGGTCTCCATCCCCAAAGATTATGAGACTGGCGCCTCTAAGGGAATGGCTTACATGGACTTCACGGATGCAGACAGCTTCAACAAAGCTCTAGGACTTGATGGAAGTGAATTTGGAGACAGTTACTTGAAGGTGGAAGAGGCTAAACCAAAAGGTGATTTTGGTACTCCCAGGAGTAATGATAGGAGTTTTTCCAGTAATCGTGGTGGAGGGCGTTTTAGCAGAGGTGGGGATCGGGGACGTGGTTTCAGAGGTAGACGTGGCGGCAGAGATGGTGGACGTGGCGGCAGAGATGGTGGACGTGGTAGAGGACGGAAAAAGACGACCTTCGACGACTAG

Protein Analysis

459

Amino Acids

48.91

Weight (kDa)

5.48

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 485
AccB1I GGYRCC 2 cut(s) 485, 1070
AccI GTMKAC 1 cut(s) 1294
AciI CCGC 4 cut(s) 24, 45, 1302, 1323
AclWI GGATC 3 cut(s) 478, 734, 1278
AcsI RAATTY 3 cut(s) 691, 812, 1148
AcuI CTGAAG 3 cut(s) 384, 495, 765
AcvI CACGTG 1 cut(s) 932
AcyI GRCGYC 1 cut(s) 1071
AdeI CACNNNGTG 1 cut(s) 935
AfaI GTAC 2 cut(s) 487, 1204
AfiI CCNNNNNNNGG 4 cut(s) 71, 388, 673, 897
AgsI TTSAA 6 cut(s) 507, 700, 757, 812, 1120, 1168
AhlI ACTAGT 1 cut(s) 215
AjiI CACGTC 4 cut(s) 1280, 1298, 1319, 1340
AjnI CCWGG 1 cut(s) 1208
AluBI AGCT 9 cut(s) 62, 284, 339, 416, 465, 972, 999, 1116, 1127
AluI AGCT 9 cut(s) 62, 284, 339, 416, 465, 972, 999, 1116, 1127
Alw21I GWGCWC 1 cut(s) 1001
Alw26I GTCTC 4 cut(s) 331, 1048, 1058, 1149
AlwI GGATC 3 cut(s) 478, 734, 1278
AlwNI CAGNNNCTG 2 cut(s) 440, 743
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 6 cut(s) 284, 305, 410, 413, 416, 462
ApoI RAATTY 3 cut(s) 691, 812, 1148
Asp700I GAANNNNTTC 1 cut(s) 695
Asp718I GGTACC 1 cut(s) 485
AspLEI GCGC 3 cut(s) 125, 157, 1073
AspS9I GGNCC 2 cut(s) 428, 926
AsuC2I CCSGG 2 cut(s) 97, 898
AsuHPI GGTGA 3 cut(s) 884, 1040, 1205
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 2 cut(s) 428, 926
BaeI ACNNNNGTAYC 2 cut(s) 652, 685
BanI GGYRCC 2 cut(s) 485, 1070
BanII GRGCYC 1 cut(s) 1001
BauI CACGAG 1 cut(s) 861
BbrPI CACGTG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 1001
BbvI GCAGC 6 cut(s) 271, 292, 397, 403, 425, 474
BccI CCATC 6 cut(s) 439, 548, 1055, 1133, 1304, 1325
BciT130I CCWGG 1 cut(s) 1210
BciVI GTATCC 1 cut(s) 535
BcnI CCSGG 2 cut(s) 97, 898
BcoDI GTCTC 4 cut(s) 331, 1048, 1058, 1149
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 4 cut(s) 216, 459, 1130, 1375
BfmI CTRYAG 2 cut(s) 48, 411
BfoI RGCGCY 1 cut(s) 1074
BfuI GTATCC 1 cut(s) 535
BisI GCNGC 8 cut(s) 285, 306, 411, 414, 417, 463, 1303, 1324
BlsI GCNGC 8 cut(s) 286, 307, 412, 415, 418, 464, 1304, 1325
Bme1390I CCNGG 3 cut(s) 97, 898, 1210
Bme18I GGWCC 2 cut(s) 428, 926
BmeT110I CYCGRG 1 cut(s) 977
BmgBI CACGTC 4 cut(s) 1280, 1298, 1319, 1340
BmgT120I GGNCC 2 cut(s) 428, 926
BmiI GGNNCC 6 cut(s) 42, 94, 267, 487, 927, 1072
BmrFI CCNGG 3 cut(s) 97, 898, 1210
BmsI GCATC 2 cut(s) 694, 1096
BpiI GAAGAC 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 896, 928
BpmI CTGGAG 1 cut(s) 606
BpuMI CCSGG 2 cut(s) 97, 898
BsaAI YACGTR 1 cut(s) 932
BsaHI GRCGYC 1 cut(s) 1071
BsaI GGTCTC 1 cut(s) 1048
BsaJI CCNNGG 2 cut(s) 225, 1208
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 388, 673, 897
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 5 cut(s) 400, 550, 623, 1072, 1233
BseBI CCWGG 1 cut(s) 1210
BseDI CCNNGG 2 cut(s) 225, 1208
BseGI GGATG 5 cut(s) 502, 598, 991, 1047, 1111
BseLI CCNNNNNNNGG 4 cut(s) 71, 388, 673, 897
BseMII CTCAG 5 cut(s) 206, 302, 342, 354, 750
BseNI ACTGG 5 cut(s) 400, 550, 623, 1072, 1233
BseRI GAGGAG 3 cut(s) 105, 242, 245
BseXI GCAGC 6 cut(s) 271, 292, 397, 403, 425, 474
BshFI GGCC 1 cut(s) 406
BshNI GGYRCC 2 cut(s) 485, 1070
BsiHKAI GWGCWC 1 cut(s) 1001
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 4 cut(s) 96, 333, 708, 897
BslFI GGGAC 2 cut(s) 939, 1290
BslI CCNNNNNNNGG 4 cut(s) 71, 388, 673, 897
BsmAI GTCTC 4 cut(s) 331, 1048, 1058, 1149
BsmFI GGGAC 2 cut(s) 939, 1290
BsmI GAATGC 1 cut(s) 162
BsnI GGCC 1 cut(s) 406
Bso31I GGTCTC 1 cut(s) 1048
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 1 cut(s) 1001
Bsp143I GATC 4 cut(s) 470, 739, 853, 1270
BspACI CCGC 4 cut(s) 24, 45, 1302, 1323
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 5 cut(s) 205, 301, 341, 353, 749
BspLI GGNNCC 6 cut(s) 42, 94, 267, 487, 927, 1072
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 3 cut(s) 478, 734, 1278
BspT107I GGYRCC 2 cut(s) 485, 1070
BspTNI GGTCTC 1 cut(s) 1048
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 5 cut(s) 400, 550, 623, 1072, 1233
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 225, 1208
BssMI GATC 4 cut(s) 470, 739, 853, 1270
BssNI GRCGYC 1 cut(s) 1071
BssSI CACGAG 1 cut(s) 861
Bst2BI CACGAG 1 cut(s) 861
Bst2UI CCWGG 1 cut(s) 1210
Bst4CI ACNGT 1 cut(s) 1160
Bst6I CTCTTC 4 cut(s) 520, 558, 582, 1170
BstACI GRCGYC 1 cut(s) 1071
BstBAI YACGTR 1 cut(s) 932
BstC8I GCNNGC 2 cut(s) 408, 709
BstF5I GGATG 5 cut(s) 502, 598, 991, 1047, 1111
BstH2I RGCGCY 1 cut(s) 1074
BstHHI GCGC 3 cut(s) 125, 157, 1073
BstKTI GATC 4 cut(s) 473, 742, 856, 1273
BstMAI GTCTC 4 cut(s) 331, 1048, 1058, 1149
BstMBI GATC 4 cut(s) 470, 739, 853, 1270
BstMWI GCNNNNNNNGC 4 cut(s) 12, 416, 794, 803
BstNI CCWGG 1 cut(s) 1210
BstNSI RCATGY 1 cut(s) 773
BstSCI CCNGG 3 cut(s) 95, 896, 1208
BstSFI CTRYAG 2 cut(s) 48, 411
BstV1I GCAGC 6 cut(s) 271, 292, 397, 403, 425, 474
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 470, 739
BstYI RGATCY 2 cut(s) 470, 739
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 1 cut(s) 406
BtgZI GCGATG 1 cut(s) 369
BtrI CACGTC 4 cut(s) 1280, 1298, 1319, 1340
BtsCI GGATG 5 cut(s) 502, 598, 991, 1047, 1111
BtsIMutI CAGTG 2 cut(s) 441, 549
Cac8I GCNNGC 2 cut(s) 408, 709
CaiI CAGNNNCTG 2 cut(s) 440, 743
CfoI GCGC 3 cut(s) 125, 157, 1073
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 2 cut(s) 428, 926
CseI GACGC 2 cut(s) 649, 927
Csp6I GTAC 2 cut(s) 486, 1203
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 3 cut(s) 680, 770, 1093
CviQI GTAC 2 cut(s) 486, 1203
DinI GGCGCC 1 cut(s) 1072
DpnI GATC 4 cut(s) 472, 741, 855, 1272
DpnII GATC 4 cut(s) 470, 739, 853, 1270
DraIII CACNNNGTG 1 cut(s) 935
Eam1104I CTCTTC 4 cut(s) 520, 558, 582, 1170
EarI CTCTTC 4 cut(s) 520, 558, 582, 1170
EciI GGCGGA 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 999
Eco147I AGGCCT 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 1001
Eco31I GGTCTC 1 cut(s) 1048
Eco47I GGWCC 2 cut(s) 428, 926
Eco53kI GAGCTC 1 cut(s) 999
Eco57I CTGAAG 3 cut(s) 384, 495, 765
Eco72I CACGTG 1 cut(s) 932
Eco88I CYCGRG 1 cut(s) 977
EcoICRI GAGCTC 1 cut(s) 999
EcoRII CCWGG 1 cut(s) 1208
EcoT38I GRGCYC 1 cut(s) 1001
EgeI GGCGCC 1 cut(s) 1072
EheI GGCGCC 1 cut(s) 1072
FaeI CATG 3 cut(s) 683, 773, 1096
FaiI YATR 8 cut(s) 311, 536, 681, 771, 888, 916, 1062, 1094
FalI AAGNNNNNCTT 1 cut(s) 1349
FaqI GGGAC 2 cut(s) 939, 1290
FatI CATG 3 cut(s) 679, 769, 1092
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 1294
Fnu4HI GCNGC 8 cut(s) 285, 306, 411, 414, 417, 463, 1303, 1324
FokI GGATG 5 cut(s) 509, 605, 998, 1034, 1118
FriOI GRGCYC 1 cut(s) 1001
Fsp4HI GCNGC 8 cut(s) 285, 306, 411, 414, 417, 463, 1303, 1324
FspBI CTAG 4 cut(s) 216, 459, 1130, 1375
GlaI GCGC 3 cut(s) 124, 156, 1072
GluI GCNGC 8 cut(s) 285, 306, 411, 414, 417, 463, 1303, 1324
GsuI CTGGAG 1 cut(s) 606
HaeII RGCGCY 1 cut(s) 1074
HaeIII GGCC 1 cut(s) 406
HapII CCGG 4 cut(s) 96, 333, 708, 897
HgaI GACGC 2 cut(s) 649, 927
HhaI GCGC 3 cut(s) 125, 157, 1073
Hin1I GRCGYC 1 cut(s) 1071
Hin1II CATG 3 cut(s) 683, 773, 1096
Hin6I GCGC 3 cut(s) 123, 155, 1071
HinP1I GCGC 3 cut(s) 123, 155, 1071
HinfI GANTC 6 cut(s) 190, 233, 359, 503, 512, 521
HpaII CCGG 4 cut(s) 96, 333, 708, 897
HphI GGTGA 3 cut(s) 884, 1040, 1205
Hpy166II GTNNAC 3 cut(s) 1295, 1316, 1337
Hpy188III TCNNGA 6 cut(s) 72, 468, 743, 809, 839, 863
Hpy8I GTNNAC 3 cut(s) 1295, 1316, 1337
Hpy99I CGWCG 1 cut(s) 1373
HpyAV CCTTC 9 cut(s) 106, 130, 256, 442, 740, 796, 916, 1162, 1375
HpyCH4III ACNGT 1 cut(s) 1160
HpyCH4IV ACGT 5 cut(s) 931, 1279, 1297, 1318, 1339
HpyCH4V TGCA 3 cut(s) 386, 413, 1109
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 416, 794, 803
HpySE526I ACGT 5 cut(s) 931, 1279, 1297, 1318, 1339
Hsp92I GRCGYC 1 cut(s) 1071
Hsp92II CATG 3 cut(s) 683, 773, 1096
HspAI GCGC 3 cut(s) 123, 155, 1071
KasI GGCGCC 1 cut(s) 1070
KpnI GGTACC 1 cut(s) 489
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
Kzo9I GATC 4 cut(s) 470, 739, 853, 1270
LmnI GCTCC 6 cut(s) 46, 67, 92, 271, 996, 1004
Lsp1109I GCAGC 6 cut(s) 271, 292, 397, 403, 425, 474
LweI GCATC 2 cut(s) 694, 1096
MaeI CTAG 4 cut(s) 216, 459, 1130, 1375
MaeII ACGT 5 cut(s) 931, 1279, 1297, 1318, 1339
MaeIII GTNAC 3 cut(s) 391, 625, 1160
MalI GATC 4 cut(s) 472, 741, 855, 1272
MboI GATC 4 cut(s) 470, 739, 853, 1270
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 2 cut(s) 470, 739
MhlI GDGCHC 1 cut(s) 1001
MluCI AATT 5 cut(s) 507, 691, 812, 827, 1148
Mly113I GGCGCC 1 cut(s) 1071
MlyI GAGTC 4 cut(s) 184, 242, 506, 515
MmeI TCCRAC 1 cut(s) 631
MroNI GCCGGC 1 cut(s) 707
MroXI GAANNNNTTC 1 cut(s) 695
MseI TTAA 2 cut(s) 444, 816
MspA1I CMGCKG 2 cut(s) 47, 416
MspI CCGG 4 cut(s) 96, 333, 708, 897
MspR9I CCNGG 3 cut(s) 97, 898, 1210
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 162
MvaI CCWGG 1 cut(s) 1210
MwoI GCNNNNNNNGC 4 cut(s) 12, 416, 794, 803
NaeI GCCGGC 1 cut(s) 709
NarI GGCGCC 1 cut(s) 1071
NciI CCSGG 2 cut(s) 97, 898
NdeII GATC 4 cut(s) 470, 739, 853, 1270
NgoMIV GCCGGC 1 cut(s) 707
NlaIII CATG 3 cut(s) 683, 773, 1096
NlaIV GGNNCC 6 cut(s) 42, 94, 267, 487, 927, 1072
NspI RCATGY 1 cut(s) 773
PceI AGGCCT 1 cut(s) 406
PctI GAATGC 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 2 cut(s) 359, 503
PkrI GCNGC 8 cut(s) 286, 307, 412, 415, 418, 464, 1304, 1325
PleI GAGTC 4 cut(s) 184, 241, 506, 515
PluTI GGCGCC 1 cut(s) 1074
PmaCI CACGTG 1 cut(s) 932
PmlI CACGTG 1 cut(s) 932
PpsI GAGTC 4 cut(s) 184, 241, 506, 515
Ppu21I YACGTR 1 cut(s) 932
Psp124BI GAGCTC 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 1208
PspCI CACGTG 1 cut(s) 932
PspGI CCWGG 1 cut(s) 1208
PspN4I GGNNCC 6 cut(s) 42, 94, 267, 487, 927, 1072
PspPI GGNCC 2 cut(s) 428, 926
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 2 cut(s) 440, 743
PsuI RGATCY 2 cut(s) 470, 739
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 487, 1204
RsaNI GTAC 2 cut(s) 486, 1203
SacI GAGCTC 1 cut(s) 1001
SaqAI TTAA 2 cut(s) 444, 816
SatI GCNGC 8 cut(s) 285, 306, 411, 414, 417, 463, 1303, 1324
Sau3AI GATC 4 cut(s) 470, 739, 853, 1270
Sau96I GGNCC 2 cut(s) 428, 926
SchI GAGTC 4 cut(s) 184, 242, 506, 515
ScrFI CCNGG 3 cut(s) 97, 898, 1210
SduI GDGCHC 1 cut(s) 1001
SfaNI GCATC 2 cut(s) 694, 1096
SfcI CTRYAG 2 cut(s) 48, 411
SfoI GGCGCC 1 cut(s) 1072
SinI GGWCC 2 cut(s) 428, 926
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 5 cut(s) 507, 691, 812, 827, 1148
SseBI AGGCCT 1 cut(s) 406
SsiI CCGC 4 cut(s) 24, 45, 1302, 1323
SspDI GGCGCC 1 cut(s) 1070
SspI AATATT 1 cut(s) 951
SspMI CTAG 4 cut(s) 216, 459, 1130, 1375
SstI GAGCTC 1 cut(s) 1001
StuI AGGCCT 1 cut(s) 406
StyD4I CCNGG 3 cut(s) 95, 896, 1208
TaaI ACNGT 1 cut(s) 1160
TaiI ACGT 5 cut(s) 934, 1282, 1300, 1321, 1342
TaqI TCGA 5 cut(s) 180, 672, 958, 966, 1368
TasI AATT 5 cut(s) 507, 691, 812, 827, 1148
TauI GCSGC 2 cut(s) 1305, 1326
TfiI GAWTC 2 cut(s) 359, 503
Tru1I TTAA 2 cut(s) 444, 816
Tru9I TTAA 2 cut(s) 444, 816
TscAI CASTG 2 cut(s) 441, 556
TseI GCWGC 6 cut(s) 284, 305, 410, 413, 416, 462
TspDTI ATGAA 3 cut(s) 372, 390, 612
TspGWI ACGGA 4 cut(s) 656, 716, 1118, 1366
TspRI CASTG 2 cut(s) 441, 556
VpaK11BI GGWCC 2 cut(s) 428, 926
XapI RAATTY 3 cut(s) 691, 812, 1148
XceI RCATGY 1 cut(s) 773
XmiI GTMKAC 1 cut(s) 1294
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 4 cut(s) 216, 459, 1130, 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.