RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48920 AT3G18610 AT3G18610 AT3G18610 |
| malus_domestica | MD13G1006400.v1.1 MD16G1001600.v1.1 |
| prunus_persica | Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1 Prupe.1G346800_v2.0.a1 |
| pyrus_communis | pycom13g00530 pycom16g00400 |
| rosa_multiflora | Rmu_co8373157.1_g000001 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 775, 1129 |
| AccBSI | CCGCTC | 3 cut(s) | 269, 1270, 1485 |
| AccI | GTMKAC | 1 cut(s) | 1529 |
| AciI | CCGC | 5 cut(s) | 116, 267, 714, 1270, 1485 |
| AclWI | GGATC | 1 cut(s) | 1963 |
| AcoI | YGGCCR | 4 cut(s) | 1825, 1852, 1879, 1912 |
| AcsI | RAATTY | 3 cut(s) | 1285, 1370, 1595 |
| AcuI | CTGAAG | 6 cut(s) | 306, 687, 780, 1236, 1356, 1990 |
| AfaI | GTAC | 3 cut(s) | 153, 592, 1758 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 586, 587, 1484, 1567, 1693, 1988 |
| AgsI | TTSAA | 8 cut(s) | 182, 372, 927, 1157, 1261, 1283, 1406, 1705 |
| AhlI | ACTAGT | 2 cut(s) | 212, 653 |
| AjiI | CACGTC | 1 cut(s) | 1949 |
| AjnI | CCWGG | 2 cut(s) | 1686, 1981 |
| Alw21I | GWGCWC | 1 cut(s) | 1586 |
| Alw26I | GTCTC | 2 cut(s) | 1435, 1643 |
| AlwI | GGATC | 1 cut(s) | 1963 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 47, 251, 635 |
| AoxI | GGCC | 9 cut(s) | 505, 1429, 1522, 1744, 1764, 1825, 1852, 1879, 1912 |
| ApoI | RAATTY | 3 cut(s) | 1285, 1370, 1595 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 474 |
| AspS9I | GGNCC | 4 cut(s) | 506, 623, 1429, 1745 |
| AsuC2I | CCSGG | 1 cut(s) | 1916 |
| AsuHPI | GGTGA | 3 cut(s) | 130, 1316, 1318 |
| AsuII | TTCGAA | 1 cut(s) | 1175 |
| AvaII | GGWCC | 1 cut(s) | 623 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1137, 1170 |
| BanII | GRGCYC | 3 cut(s) | 826, 1023, 1586 |
| BauI | CACGAG | 2 cut(s) | 1455, 1773 |
| BbsI | GAAGAC | 4 cut(s) | 231, 882, 1083, 2003 |
| Bbv12I | GWGCWC | 1 cut(s) | 1586 |
| BccI | CCATC | 7 cut(s) | 310, 439, 838, 1334, 1640, 1663, 1685 |
| BceAI | ACGGC | 5 cut(s) | 1416, 1759, 1812, 1839, 1866 |
| BciT130I | CCWGG | 2 cut(s) | 1688, 1983 |
| BciVI | GTATCC | 2 cut(s) | 721, 1138 |
| BcnI | CCSGG | 1 cut(s) | 1916 |
| BcoDI | GTCTC | 2 cut(s) | 1435, 1643 |
| BcuI | ACTAGT | 2 cut(s) | 212, 653 |
| BfaI | CTAG | 3 cut(s) | 213, 654, 1973 |
| BfmI | CTRYAG | 2 cut(s) | 51, 513 |
| BfuAI | ACCTGC | 2 cut(s) | 775, 1129 |
| BfuI | GTATCC | 2 cut(s) | 721, 1138 |
| Bme1390I | CCNGG | 3 cut(s) | 1688, 1916, 1983 |
| Bme18I | GGWCC | 1 cut(s) | 623 |
| BmgBI | CACGTC | 1 cut(s) | 1949 |
| BmgT120I | GGNCC | 4 cut(s) | 506, 623, 1429, 1745 |
| BmiI | GGNNCC | 2 cut(s) | 1020, 1747 |
| BmrFI | CCNGG | 3 cut(s) | 1688, 1916, 1983 |
| BmsI | GCATC | 4 cut(s) | 28, 306, 1156, 1288 |
| BpiI | GAAGAC | 4 cut(s) | 231, 882, 1083, 2003 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1007, 1039, 1484, 1516 |
| BpmI | CTGGAG | 2 cut(s) | 426, 1947 |
| Bpu14I | TTCGAA | 1 cut(s) | 1175 |
| BpuEI | CTTGAG | 1 cut(s) | 1638 |
| BpuMI | CCSGG | 1 cut(s) | 1916 |
| BsaJI | CCNNGG | 5 cut(s) | 486, 1432, 1561, 1662, 1915 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 399, 429, 502, 532, 1807, 1837 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 586, 587, 1484, 1567, 1693, 1988 |
| Bse1I | ACTGG | 1 cut(s) | 1525 |
| BseBI | CCWGG | 2 cut(s) | 1688, 1983 |
| BseDI | CCNNGG | 5 cut(s) | 486, 1432, 1561, 1662, 1915 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 586, 587, 1484, 1567, 1693, 1988 |
| BseMII | CTCAG | 4 cut(s) | 213, 564, 971, 1770 |
| BseNI | ACTGG | 1 cut(s) | 1525 |
| BseRI | GAGGAG | 7 cut(s) | 239, 686, 745, 1001, 1031, 1124, 1956 |
| BseYI | CCCAGC | 1 cut(s) | 1426 |
| BshFI | GGCC | 9 cut(s) | 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1586 |
| BsiSI | CCGG | 1 cut(s) | 1915 |
| BslFI | GGGAC | 4 cut(s) | 41, 412, 1856, 1883 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 586, 587, 1484, 1567, 1693, 1988 |
| BsmAI | GTCTC | 2 cut(s) | 1435, 1643 |
| BsmFI | GGGAC | 4 cut(s) | 41, 412, 1856, 1883 |
| BsnI | GGCC | 9 cut(s) | 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914 |
| Bsp119I | TTCGAA | 1 cut(s) | 1175 |
| Bsp1286I | GDGCHC | 3 cut(s) | 826, 1023, 1586 |
| Bsp1407I | TGTACA | 1 cut(s) | 151 |
| Bsp143I | GATC | 3 cut(s) | 1447, 1575, 1955 |
| BspACI | CCGC | 5 cut(s) | 116, 267, 714, 1270, 1485 |
| BspANI | GGCC | 9 cut(s) | 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914 |
| BspCNI | CTCAG | 4 cut(s) | 214, 563, 970, 1771 |
| BspLI | GGNNCC | 2 cut(s) | 1020, 1747 |
| BspMAI | CTGCAG | 1 cut(s) | 517 |
| BspMI | ACCTGC | 2 cut(s) | 775, 1129 |
| BspPI | GGATC | 1 cut(s) | 1963 |
| BspT104I | TTCGAA | 1 cut(s) | 1175 |
| BsrBI | CCGCTC | 3 cut(s) | 269, 1270, 1485 |
| BsrGI | TGTACA | 1 cut(s) | 151 |
| BsrI | ACTGG | 1 cut(s) | 1525 |
| BssECI | CCNNGG | 5 cut(s) | 486, 1432, 1561, 1662, 1915 |
| BssMI | GATC | 3 cut(s) | 1447, 1575, 1955 |
| BssSI | CACGAG | 2 cut(s) | 1455, 1773 |
| BssT1I | CCWWGG | 3 cut(s) | 486, 1561, 1662 |
| Bst2BI | CACGAG | 2 cut(s) | 1455, 1773 |
| Bst2UI | CCWGG | 2 cut(s) | 1688, 1983 |
| Bst4CI | ACNGT | 3 cut(s) | 1756, 1847, 1874 |
| Bst6I | CTCTTC | 4 cut(s) | 131, 325, 663, 1101 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 47, 635, 953 |
| BstAUI | TGTACA | 1 cut(s) | 151 |
| BstBI | TTCGAA | 1 cut(s) | 1175 |
| BstC8I | GCNNGC | 2 cut(s) | 159, 1272 |
| BstDEI | CTNAG | 6 cut(s) | 66, 222, 550, 816, 957, 1779 |
| BstDSI | CCRYGG | 1 cut(s) | 1432 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1986 |
| BstKTI | GATC | 3 cut(s) | 1450, 1578, 1958 |
| BstMAI | GTCTC | 2 cut(s) | 1435, 1643 |
| BstMBI | GATC | 3 cut(s) | 1447, 1575, 1955 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 12, 47, 275, 635, 812, 821, 953, 1397 |
| BstNI | CCWGG | 2 cut(s) | 1688, 1983 |
| BstNSI | RCATGY | 1 cut(s) | 1367 |
| BstSCI | CCNGG | 3 cut(s) | 1686, 1914, 1981 |
| BstSFI | CTRYAG | 2 cut(s) | 51, 513 |
| BstV2I | GAAGAC | 4 cut(s) | 231, 882, 1083, 2003 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1669 |
| BsuI | GTATCC | 2 cut(s) | 721, 1138 |
| BsuRI | GGCC | 9 cut(s) | 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914 |
| BtgI | CCRYGG | 1 cut(s) | 1432 |
| BtrI | CACGTC | 1 cut(s) | 1949 |
| BtsI | GCAGTG | 1 cut(s) | 636 |
| BtsIMutI | CAGTG | 4 cut(s) | 636, 1852, 1879, 2014 |
| BveI | ACCTGC | 2 cut(s) | 775, 1129 |
| Cac8I | GCNNGC | 2 cut(s) | 159, 1272 |
| CaiI | CAGNNNCTG | 3 cut(s) | 47, 251, 635 |
| Cfr13I | GGNCC | 4 cut(s) | 506, 623, 1429, 1745 |
| Csp6I | GTAC | 3 cut(s) | 152, 591, 1757 |
| CviAII | CATG | 2 cut(s) | 1364, 1934 |
| CviQI | GTAC | 3 cut(s) | 152, 591, 1757 |
| DdeI | CTNAG | 6 cut(s) | 66, 222, 550, 816, 957, 1779 |
| DpnI | GATC | 3 cut(s) | 1449, 1577, 1957 |
| DpnII | GATC | 3 cut(s) | 1447, 1575, 1955 |
| EaeI | YGGCCR | 4 cut(s) | 1825, 1852, 1879, 1912 |
| Eam1104I | CTCTTC | 4 cut(s) | 131, 325, 663, 1101 |
| EarI | CTCTTC | 4 cut(s) | 131, 325, 663, 1101 |
| Ecl136II | GAGCTC | 1 cut(s) | 1584 |
| Eco130I | CCWWGG | 3 cut(s) | 486, 1561, 1662 |
| Eco24I | GRGCYC | 3 cut(s) | 826, 1023, 1586 |
| Eco47I | GGWCC | 1 cut(s) | 623 |
| Eco53kI | GAGCTC | 1 cut(s) | 1584 |
| Eco57I | CTGAAG | 6 cut(s) | 306, 687, 780, 1236, 1356, 1990 |
| EcoICRI | GAGCTC | 1 cut(s) | 1584 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1986 |
| EcoRII | CCWGG | 2 cut(s) | 1686, 1981 |
| EcoT14I | CCWWGG | 3 cut(s) | 486, 1561, 1662 |
| EcoT38I | GRGCYC | 3 cut(s) | 826, 1023, 1586 |
| ErhI | CCWWGG | 3 cut(s) | 486, 1561, 1662 |
| FaeI | CATG | 2 cut(s) | 1367, 1937 |
| FaiI | YATR | 5 cut(s) | 1365, 1473, 1504, 1647, 1935 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 1453, 1485, 1988 |
| FaqI | GGGAC | 4 cut(s) | 41, 412, 1856, 1883 |
| FatI | CATG | 2 cut(s) | 1363, 1933 |
| FauI | CCCGC | 2 cut(s) | 274, 1263 |
| FblI | GTMKAC | 1 cut(s) | 1529 |
| FriOI | GRGCYC | 3 cut(s) | 826, 1023, 1586 |
| FspBI | CTAG | 3 cut(s) | 213, 654, 1973 |
| GsaI | CCCAGC | 1 cut(s) | 1430 |
| GsuI | CTGGAG | 2 cut(s) | 426, 1947 |
| HaeIII | GGCC | 9 cut(s) | 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914 |
| HapII | CCGG | 1 cut(s) | 1915 |
| Hin1II | CATG | 2 cut(s) | 1367, 1937 |
| HpaII | CCGG | 1 cut(s) | 1915 |
| HphI | GGTGA | 3 cut(s) | 130, 1316, 1318 |
| Hpy166II | GTNNAC | 3 cut(s) | 152, 1517, 1530 |
| Hpy188III | TCNNGA | 6 cut(s) | 76, 1214, 1403, 1457, 1579, 1926 |
| Hpy8I | GTNNAC | 3 cut(s) | 152, 1517, 1530 |
| HpyCH4III | ACNGT | 3 cut(s) | 1756, 1847, 1874 |
| HpyCH4IV | ACGT | 1 cut(s) | 1948 |
| HpyCH4V | TGCA | 7 cut(s) | 41, 515, 584, 935, 947, 1124, 1591 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 12, 47, 275, 635, 812, 821, 953, 1397 |
| HpyF3I | CTNAG | 6 cut(s) | 66, 222, 550, 816, 957, 1779 |
| HpySE526I | ACGT | 1 cut(s) | 1948 |
| Hsp92II | CATG | 2 cut(s) | 1367, 1937 |
| Kzo9I | GATC | 3 cut(s) | 1447, 1575, 1955 |
| LweI | GCATC | 4 cut(s) | 28, 306, 1156, 1288 |
| MaeI | CTAG | 3 cut(s) | 213, 654, 1973 |
| MaeII | ACGT | 1 cut(s) | 1948 |
| MaeIII | GTNAC | 5 cut(s) | 490, 718, 787, 967, 995 |
| MalI | GATC | 3 cut(s) | 1449, 1577, 1957 |
| MbiI | CCGCTC | 3 cut(s) | 269, 1270, 1485 |
| MboI | GATC | 3 cut(s) | 1447, 1575, 1955 |
| MhlI | GDGCHC | 3 cut(s) | 826, 1023, 1586 |
| MluCI | AATT | 6 cut(s) | 696, 1285, 1308, 1370, 1406, 1595 |
| MlyI | GAGTC | 8 cut(s) | 236, 242, 311, 530, 566, 1097, 1123, 1645 |
| MmeI | TCCRAC | 2 cut(s) | 210, 1225 |
| MroXI | GAANNNNTTC | 1 cut(s) | 474 |
| MseI | TTAA | 4 cut(s) | 417, 1293, 1409, 1722 |
| MspA1I | CMGCKG | 2 cut(s) | 404, 716 |
| MspI | CCGG | 1 cut(s) | 1915 |
| MspR9I | CCNGG | 3 cut(s) | 1688, 1916, 1983 |
| MvaI | CCWGG | 2 cut(s) | 1688, 1983 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 12, 47, 275, 635, 812, 821, 953, 1397 |
| NciI | CCSGG | 1 cut(s) | 1916 |
| NdeII | GATC | 3 cut(s) | 1447, 1575, 1955 |
| NlaIII | CATG | 2 cut(s) | 1367, 1937 |
| NlaIV | GGNNCC | 2 cut(s) | 1020, 1747 |
| NmeAIII | GCCGAG | 1 cut(s) | 121 |
| NmuCI | GTSAC | 2 cut(s) | 967, 995 |
| NspI | RCATGY | 1 cut(s) | 1367 |
| NspV | TTCGAA | 1 cut(s) | 1175 |
| PdmI | GAANNNNTTC | 1 cut(s) | 474 |
| PfeI | GAWTC | 7 cut(s) | 332, 449, 458, 740, 866, 1079, 1172 |
| PfoI | TCCNGGA | 2 cut(s) | 1686, 1981 |
| PleI | GAGTC | 8 cut(s) | 235, 242, 311, 530, 565, 1096, 1123, 1645 |
| PpsI | GAGTC | 8 cut(s) | 235, 242, 311, 530, 565, 1096, 1123, 1645 |
| Psp124BI | GAGCTC | 1 cut(s) | 1586 |
| Psp6I | CCWGG | 2 cut(s) | 1686, 1981 |
| PspFI | CCCAGC | 1 cut(s) | 1426 |
| PspGI | CCWGG | 2 cut(s) | 1686, 1981 |
| PspN4I | GGNNCC | 2 cut(s) | 1020, 1747 |
| PspPI | GGNCC | 4 cut(s) | 506, 623, 1429, 1745 |
| PstI | CTGCAG | 1 cut(s) | 517 |
| PstNI | CAGNNNCTG | 3 cut(s) | 47, 251, 635 |
| PvuII | CAGCTG | 1 cut(s) | 404 |
| RsaI | GTAC | 3 cut(s) | 153, 592, 1758 |
| RsaNI | GTAC | 3 cut(s) | 152, 591, 1757 |
| SacI | GAGCTC | 1 cut(s) | 1586 |
| SaqAI | TTAA | 4 cut(s) | 417, 1293, 1409, 1722 |
| Sau3AI | GATC | 3 cut(s) | 1447, 1575, 1955 |
| Sau96I | GGNCC | 4 cut(s) | 506, 623, 1429, 1745 |
| SchI | GAGTC | 8 cut(s) | 236, 242, 311, 530, 566, 1097, 1123, 1645 |
| ScrFI | CCNGG | 3 cut(s) | 1688, 1916, 1983 |
| SduI | GDGCHC | 3 cut(s) | 826, 1023, 1586 |
| SfaNI | GCATC | 4 cut(s) | 28, 306, 1156, 1288 |
| SfcI | CTRYAG | 2 cut(s) | 51, 513 |
| SfuI | TTCGAA | 1 cut(s) | 1175 |
| SinI | GGWCC | 1 cut(s) | 623 |
| SmlI | CTYRAG | 1 cut(s) | 1653 |
| SmoI | CTYRAG | 1 cut(s) | 1653 |
| SpeI | ACTAGT | 2 cut(s) | 212, 653 |
| Sse9I | AATT | 6 cut(s) | 696, 1285, 1308, 1370, 1406, 1595 |
| SsiI | CCGC | 5 cut(s) | 116, 267, 714, 1270, 1485 |
| SspI | AATATT | 1 cut(s) | 1536 |
| SspMI | CTAG | 3 cut(s) | 213, 654, 1973 |
| SstI | GAGCTC | 1 cut(s) | 1586 |
| StyD4I | CCNGG | 3 cut(s) | 1686, 1914, 1981 |
| StyI | CCWWGG | 3 cut(s) | 486, 1561, 1662 |
| TaaI | ACNGT | 3 cut(s) | 1756, 1847, 1874 |
| TaiI | ACGT | 1 cut(s) | 1951 |
| TaqI | TCGA | 4 cut(s) | 36, 1175, 1543, 1958 |
| TasI | AATT | 6 cut(s) | 696, 1285, 1308, 1370, 1406, 1595 |
| TatI | WGTACW | 2 cut(s) | 151, 1756 |
| TauI | GCSGC | 1 cut(s) | 1488 |
| TfiI | GAWTC | 7 cut(s) | 332, 449, 458, 740, 866, 1079, 1172 |
| Tru1I | TTAA | 4 cut(s) | 417, 1293, 1409, 1722 |
| Tru9I | TTAA | 4 cut(s) | 417, 1293, 1409, 1722 |
| TscAI | CASTG | 4 cut(s) | 636, 1852, 1879, 2014 |
| TseFI | GTSAC | 2 cut(s) | 967, 995 |
| Tsp45I | GTSAC | 2 cut(s) | 967, 995 |
| TspDTI | ATGAA | 8 cut(s) | 231, 354, 462, 471, 588, 888, 1083, 1131 |
| TspGWI | ACGGA | 1 cut(s) | 1310 |
| TspRI | CASTG | 4 cut(s) | 636, 1852, 1879, 2014 |
| VpaK11BI | GGWCC | 1 cut(s) | 623 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1986 |
| XapI | RAATTY | 3 cut(s) | 1285, 1370, 1595 |
| XceI | RCATGY | 1 cut(s) | 1367 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1733 |
| XmiI | GTMKAC | 1 cut(s) | 1529 |
| XmnI | GAANNNNTTC | 1 cut(s) | 474 |
| XspI | CTAG | 3 cut(s) | 213, 654, 1973 |