Prupe.1G346800_v2.0.a1

RNA recognition motif

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
32421993 .. 32427198
5206 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G346800.1

Sequence Viewer

Length: 2019 bp
ATGGGCAAATCAAGCAAGAAGTCAGCCTCCAAAGTCGATGCAGTTCCTGCTGTAGTCCCACCTTCTAAGGCTGTCAAGAAAGGTAAGAGAGAAGCCGAGAATGTGATAGAGAAGGCGGTGAATGTAAAGAAGCAGAAGAGGGATGAGGGTGTACAGCAGGCTATTCAGAAGAAGAAAGTTGAAGCAAAGACACAAAAGAAGAAGGAAGAAACTAGTAGTTCTGAGGAGTCGGATTTGTCTTCATCAGACTCTGATGTAAAGAAACCCGCTCCAAAAGCTGCTAAAAATGGTAAAGGCATCCCATCCAGCAGTTCTGACTCTTCAGATGATGATTCTGATGAAAAACCTACTTCCAAGCCTTCTGCTCCTTCAAAAAAGTCTGTTCCTGCTAAAAATGGGACAGCTGGAGCTGGTGTTAAGAAAGCTGCTCCATCCAGCAGTTCAGATGAATCAGATGAATCTGATGAGGAAGAAGTTCCTAAAACCAAGGTAACTGCCAAGAATGGCCCAACTGCAGCTCCAAAGAAGAAGGCTGACTCAACTGACAGCTCAGATGAGTCAAGTGATGATGATGAAACCCCTGCAAAGGGTACTTCCCAAGTGCCTGTGGCTACGAAGAAAGGTCCAGCAGTGGCTGCTAAAAAGGAGGACACTAGTAGCAGCTCTGAAGAGGAGAGTGATGATGATGAGGAAGAAATTGTGAATAAAGTATCCGCTGTAACTCCTAAAGGGAAGGAGGATTCTACTGATAGCTCCTCTGAAGATAGTTCAGAGGATGAGAAGCAGGTAACAGCTAAAGGTGTTGCCCCCACAGCTAAGAGGGCTCAACCATCAAAAAAGACTGATGAGAGTTCAGAAGAAAGTGATTCTGATGAAGACGATGATGATGAGCCTCAAAATAAAAAGCCAAAGGTGTCGGCTACTTCAAAAGCTGCAAAACCAAGTGCAAAAGCTGCTCAGAAGGATGTCACTTCTGAAAGTTCAGAGGAGGATAGTGACGATGATAGTTCAGATGAGGAGCCCTCAAAGGCAGAGAAAGTAAAGAAGCCTTCCCAAGTGTCAAAGAAAGATAGTAGCGAATCTGATGAGTCTTCATCATCGGAAGAAGAGGAGGATGAACCTGCAAAGACTCCAAAGAAAAAGGATACTGATGTTGAAATGGTAGATGCTGATTCGAAGTCCGAGAAGAAAGCTCCCAAAACCCCTGCTACTCCTGAAGCAACAACTTCCAAGACCTTGTTTGTTGGAAACCTGTCATTCAATGTTGAGCGGGCTGATGTTGAAAATTTCTTTAAGGATGCTGGTGAAATTGTTGATGTCCGTTTCACCACAACTGAAGATGGGGTGTTTAGGGGCTTTGGGCATGTGGAATTTGCCACATCAGAAGCAGCACAGAAGGCTCTTGAATTAAATGGTGTGGAGCTGCTGGGCCGTGGAGTGAGACTTGATCTTGCTCGTGAAAGGGGTGCTTATACCCCACAGAGCGGCAAAGAGGGGAACTCATATCAGAAGGGTGGACAAGGCCAGTCTACAATATTTATTCGAGGTTTTGATACATCCCAAGGGGAGGATGAGATCAGGAGCTCCCTGCAAGAATTTTTTGGTGGTTGTGGAGAGATAACAAGGTTGTCCATCCCAAAAGATTATGAGACTCAAGCACCCAAGGGGATGGCTTACTTGGAGTTCCAGGATGGGGATAGTTTCAAAAAAGCTCTACAACTTAACCAATCTGACTTTGGGAACGGCCCCTTGACAGTACAAGAGGCCAAACCACGAGCTGAGTTTGGTGGTAGTGGCAGAGGTGGTGGTGGCAGGAGTGGTGGTGGCCGTTTTGGTGGTAGGGACAGTGGTGGCCGTTTTGGTGGTAGGGACAGTGGTGGCCGTTTTGGTGGTAGGCGTGGAGGTGGAGGTGGCCGGGGTTTTTCTGGAGGACATGGTAGAGGAGGACGTGGAGGATCGAACAAGCCAAATCTAGCTGCTCCTGGAACAGGGAAGAAGACTACCTTCAGTGAGGATTAG

Protein Analysis

673

Amino Acids

70.55

Weight (kDa)

5.11

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 775, 1129
AccBSI CCGCTC 3 cut(s) 269, 1270, 1485
AccI GTMKAC 1 cut(s) 1529
AciI CCGC 5 cut(s) 116, 267, 714, 1270, 1485
AclWI GGATC 1 cut(s) 1963
AcoI YGGCCR 4 cut(s) 1825, 1852, 1879, 1912
AcsI RAATTY 3 cut(s) 1285, 1370, 1595
AcuI CTGAAG 6 cut(s) 306, 687, 780, 1236, 1356, 1990
AfaI GTAC 3 cut(s) 153, 592, 1758
AfiI CCNNNNNNNGG 6 cut(s) 586, 587, 1484, 1567, 1693, 1988
AgsI TTSAA 8 cut(s) 182, 372, 927, 1157, 1261, 1283, 1406, 1705
AhlI ACTAGT 2 cut(s) 212, 653
AjiI CACGTC 1 cut(s) 1949
AjnI CCWGG 2 cut(s) 1686, 1981
Alw21I GWGCWC 1 cut(s) 1586
Alw26I GTCTC 2 cut(s) 1435, 1643
AlwI GGATC 1 cut(s) 1963
AlwNI CAGNNNCTG 3 cut(s) 47, 251, 635
AoxI GGCC 9 cut(s) 505, 1429, 1522, 1744, 1764, 1825, 1852, 1879, 1912
ApoI RAATTY 3 cut(s) 1285, 1370, 1595
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 4 cut(s) 506, 623, 1429, 1745
AsuC2I CCSGG 1 cut(s) 1916
AsuHPI GGTGA 3 cut(s) 130, 1316, 1318
AsuII TTCGAA 1 cut(s) 1175
AvaII GGWCC 1 cut(s) 623
BaeI ACNNNNGTAYC 2 cut(s) 1137, 1170
BanII GRGCYC 3 cut(s) 826, 1023, 1586
BauI CACGAG 2 cut(s) 1455, 1773
BbsI GAAGAC 4 cut(s) 231, 882, 1083, 2003
Bbv12I GWGCWC 1 cut(s) 1586
BccI CCATC 7 cut(s) 310, 439, 838, 1334, 1640, 1663, 1685
BceAI ACGGC 5 cut(s) 1416, 1759, 1812, 1839, 1866
BciT130I CCWGG 2 cut(s) 1688, 1983
BciVI GTATCC 2 cut(s) 721, 1138
BcnI CCSGG 1 cut(s) 1916
BcoDI GTCTC 2 cut(s) 1435, 1643
BcuI ACTAGT 2 cut(s) 212, 653
BfaI CTAG 3 cut(s) 213, 654, 1973
BfmI CTRYAG 2 cut(s) 51, 513
BfuAI ACCTGC 2 cut(s) 775, 1129
BfuI GTATCC 2 cut(s) 721, 1138
Bme1390I CCNGG 3 cut(s) 1688, 1916, 1983
Bme18I GGWCC 1 cut(s) 623
BmgBI CACGTC 1 cut(s) 1949
BmgT120I GGNCC 4 cut(s) 506, 623, 1429, 1745
BmiI GGNNCC 2 cut(s) 1020, 1747
BmrFI CCNGG 3 cut(s) 1688, 1916, 1983
BmsI GCATC 4 cut(s) 28, 306, 1156, 1288
BpiI GAAGAC 4 cut(s) 231, 882, 1083, 2003
BplI GAGNNNNNCTC 4 cut(s) 1007, 1039, 1484, 1516
BpmI CTGGAG 2 cut(s) 426, 1947
Bpu14I TTCGAA 1 cut(s) 1175
BpuEI CTTGAG 1 cut(s) 1638
BpuMI CCSGG 1 cut(s) 1916
BsaJI CCNNGG 5 cut(s) 486, 1432, 1561, 1662, 1915
BsaXI ACNNNNNCTCC 6 cut(s) 399, 429, 502, 532, 1807, 1837
Bsc4I CCNNNNNNNGG 6 cut(s) 586, 587, 1484, 1567, 1693, 1988
Bse1I ACTGG 1 cut(s) 1525
BseBI CCWGG 2 cut(s) 1688, 1983
BseDI CCNNGG 5 cut(s) 486, 1432, 1561, 1662, 1915
BseLI CCNNNNNNNGG 6 cut(s) 586, 587, 1484, 1567, 1693, 1988
BseMII CTCAG 4 cut(s) 213, 564, 971, 1770
BseNI ACTGG 1 cut(s) 1525
BseRI GAGGAG 7 cut(s) 239, 686, 745, 1001, 1031, 1124, 1956
BseYI CCCAGC 1 cut(s) 1426
BshFI GGCC 9 cut(s) 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914
BsiHKAI GWGCWC 1 cut(s) 1586
BsiSI CCGG 1 cut(s) 1915
BslFI GGGAC 4 cut(s) 41, 412, 1856, 1883
BslI CCNNNNNNNGG 6 cut(s) 586, 587, 1484, 1567, 1693, 1988
BsmAI GTCTC 2 cut(s) 1435, 1643
BsmFI GGGAC 4 cut(s) 41, 412, 1856, 1883
BsnI GGCC 9 cut(s) 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914
Bsp119I TTCGAA 1 cut(s) 1175
Bsp1286I GDGCHC 3 cut(s) 826, 1023, 1586
Bsp1407I TGTACA 1 cut(s) 151
Bsp143I GATC 3 cut(s) 1447, 1575, 1955
BspACI CCGC 5 cut(s) 116, 267, 714, 1270, 1485
BspANI GGCC 9 cut(s) 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914
BspCNI CTCAG 4 cut(s) 214, 563, 970, 1771
BspLI GGNNCC 2 cut(s) 1020, 1747
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 2 cut(s) 775, 1129
BspPI GGATC 1 cut(s) 1963
BspT104I TTCGAA 1 cut(s) 1175
BsrBI CCGCTC 3 cut(s) 269, 1270, 1485
BsrGI TGTACA 1 cut(s) 151
BsrI ACTGG 1 cut(s) 1525
BssECI CCNNGG 5 cut(s) 486, 1432, 1561, 1662, 1915
BssMI GATC 3 cut(s) 1447, 1575, 1955
BssSI CACGAG 2 cut(s) 1455, 1773
BssT1I CCWWGG 3 cut(s) 486, 1561, 1662
Bst2BI CACGAG 2 cut(s) 1455, 1773
Bst2UI CCWGG 2 cut(s) 1688, 1983
Bst4CI ACNGT 3 cut(s) 1756, 1847, 1874
Bst6I CTCTTC 4 cut(s) 131, 325, 663, 1101
BstAPI GCANNNNNTGC 3 cut(s) 47, 635, 953
BstAUI TGTACA 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 1175
BstC8I GCNNGC 2 cut(s) 159, 1272
BstDEI CTNAG 6 cut(s) 66, 222, 550, 816, 957, 1779
BstDSI CCRYGG 1 cut(s) 1432
BstENI CCTNNNNNAGG 1 cut(s) 1986
BstKTI GATC 3 cut(s) 1450, 1578, 1958
BstMAI GTCTC 2 cut(s) 1435, 1643
BstMBI GATC 3 cut(s) 1447, 1575, 1955
BstMWI GCNNNNNNNGC 8 cut(s) 12, 47, 275, 635, 812, 821, 953, 1397
BstNI CCWGG 2 cut(s) 1688, 1983
BstNSI RCATGY 1 cut(s) 1367
BstSCI CCNGG 3 cut(s) 1686, 1914, 1981
BstSFI CTRYAG 2 cut(s) 51, 513
BstV2I GAAGAC 4 cut(s) 231, 882, 1083, 2003
BstXI CCANNNNNNTGG 1 cut(s) 1669
BsuI GTATCC 2 cut(s) 721, 1138
BsuRI GGCC 9 cut(s) 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914
BtgI CCRYGG 1 cut(s) 1432
BtrI CACGTC 1 cut(s) 1949
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 4 cut(s) 636, 1852, 1879, 2014
BveI ACCTGC 2 cut(s) 775, 1129
Cac8I GCNNGC 2 cut(s) 159, 1272
CaiI CAGNNNCTG 3 cut(s) 47, 251, 635
Cfr13I GGNCC 4 cut(s) 506, 623, 1429, 1745
Csp6I GTAC 3 cut(s) 152, 591, 1757
CviAII CATG 2 cut(s) 1364, 1934
CviQI GTAC 3 cut(s) 152, 591, 1757
DdeI CTNAG 6 cut(s) 66, 222, 550, 816, 957, 1779
DpnI GATC 3 cut(s) 1449, 1577, 1957
DpnII GATC 3 cut(s) 1447, 1575, 1955
EaeI YGGCCR 4 cut(s) 1825, 1852, 1879, 1912
Eam1104I CTCTTC 4 cut(s) 131, 325, 663, 1101
EarI CTCTTC 4 cut(s) 131, 325, 663, 1101
Ecl136II GAGCTC 1 cut(s) 1584
Eco130I CCWWGG 3 cut(s) 486, 1561, 1662
Eco24I GRGCYC 3 cut(s) 826, 1023, 1586
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 1584
Eco57I CTGAAG 6 cut(s) 306, 687, 780, 1236, 1356, 1990
EcoICRI GAGCTC 1 cut(s) 1584
EcoNI CCTNNNNNAGG 1 cut(s) 1986
EcoRII CCWGG 2 cut(s) 1686, 1981
EcoT14I CCWWGG 3 cut(s) 486, 1561, 1662
EcoT38I GRGCYC 3 cut(s) 826, 1023, 1586
ErhI CCWWGG 3 cut(s) 486, 1561, 1662
FaeI CATG 2 cut(s) 1367, 1937
FaiI YATR 5 cut(s) 1365, 1473, 1504, 1647, 1935
FalI AAGNNNNNCTT 3 cut(s) 1453, 1485, 1988
FaqI GGGAC 4 cut(s) 41, 412, 1856, 1883
FatI CATG 2 cut(s) 1363, 1933
FauI CCCGC 2 cut(s) 274, 1263
FblI GTMKAC 1 cut(s) 1529
FriOI GRGCYC 3 cut(s) 826, 1023, 1586
FspBI CTAG 3 cut(s) 213, 654, 1973
GsaI CCCAGC 1 cut(s) 1430
GsuI CTGGAG 2 cut(s) 426, 1947
HaeIII GGCC 9 cut(s) 507, 1431, 1524, 1746, 1766, 1827, 1854, 1881, 1914
HapII CCGG 1 cut(s) 1915
Hin1II CATG 2 cut(s) 1367, 1937
HpaII CCGG 1 cut(s) 1915
HphI GGTGA 3 cut(s) 130, 1316, 1318
Hpy166II GTNNAC 3 cut(s) 152, 1517, 1530
Hpy188III TCNNGA 6 cut(s) 76, 1214, 1403, 1457, 1579, 1926
Hpy8I GTNNAC 3 cut(s) 152, 1517, 1530
HpyCH4III ACNGT 3 cut(s) 1756, 1847, 1874
HpyCH4IV ACGT 1 cut(s) 1948
HpyCH4V TGCA 7 cut(s) 41, 515, 584, 935, 947, 1124, 1591
HpyF10VI GCNNNNNNNGC 8 cut(s) 12, 47, 275, 635, 812, 821, 953, 1397
HpyF3I CTNAG 6 cut(s) 66, 222, 550, 816, 957, 1779
HpySE526I ACGT 1 cut(s) 1948
Hsp92II CATG 2 cut(s) 1367, 1937
Kzo9I GATC 3 cut(s) 1447, 1575, 1955
LweI GCATC 4 cut(s) 28, 306, 1156, 1288
MaeI CTAG 3 cut(s) 213, 654, 1973
MaeII ACGT 1 cut(s) 1948
MaeIII GTNAC 5 cut(s) 490, 718, 787, 967, 995
MalI GATC 3 cut(s) 1449, 1577, 1957
MbiI CCGCTC 3 cut(s) 269, 1270, 1485
MboI GATC 3 cut(s) 1447, 1575, 1955
MhlI GDGCHC 3 cut(s) 826, 1023, 1586
MluCI AATT 6 cut(s) 696, 1285, 1308, 1370, 1406, 1595
MlyI GAGTC 8 cut(s) 236, 242, 311, 530, 566, 1097, 1123, 1645
MmeI TCCRAC 2 cut(s) 210, 1225
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 4 cut(s) 417, 1293, 1409, 1722
MspA1I CMGCKG 2 cut(s) 404, 716
MspI CCGG 1 cut(s) 1915
MspR9I CCNGG 3 cut(s) 1688, 1916, 1983
MvaI CCWGG 2 cut(s) 1688, 1983
MwoI GCNNNNNNNGC 8 cut(s) 12, 47, 275, 635, 812, 821, 953, 1397
NciI CCSGG 1 cut(s) 1916
NdeII GATC 3 cut(s) 1447, 1575, 1955
NlaIII CATG 2 cut(s) 1367, 1937
NlaIV GGNNCC 2 cut(s) 1020, 1747
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 967, 995
NspI RCATGY 1 cut(s) 1367
NspV TTCGAA 1 cut(s) 1175
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 7 cut(s) 332, 449, 458, 740, 866, 1079, 1172
PfoI TCCNGGA 2 cut(s) 1686, 1981
PleI GAGTC 8 cut(s) 235, 242, 311, 530, 565, 1096, 1123, 1645
PpsI GAGTC 8 cut(s) 235, 242, 311, 530, 565, 1096, 1123, 1645
Psp124BI GAGCTC 1 cut(s) 1586
Psp6I CCWGG 2 cut(s) 1686, 1981
PspFI CCCAGC 1 cut(s) 1426
PspGI CCWGG 2 cut(s) 1686, 1981
PspN4I GGNNCC 2 cut(s) 1020, 1747
PspPI GGNCC 4 cut(s) 506, 623, 1429, 1745
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 3 cut(s) 47, 251, 635
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 3 cut(s) 153, 592, 1758
RsaNI GTAC 3 cut(s) 152, 591, 1757
SacI GAGCTC 1 cut(s) 1586
SaqAI TTAA 4 cut(s) 417, 1293, 1409, 1722
Sau3AI GATC 3 cut(s) 1447, 1575, 1955
Sau96I GGNCC 4 cut(s) 506, 623, 1429, 1745
SchI GAGTC 8 cut(s) 236, 242, 311, 530, 566, 1097, 1123, 1645
ScrFI CCNGG 3 cut(s) 1688, 1916, 1983
SduI GDGCHC 3 cut(s) 826, 1023, 1586
SfaNI GCATC 4 cut(s) 28, 306, 1156, 1288
SfcI CTRYAG 2 cut(s) 51, 513
SfuI TTCGAA 1 cut(s) 1175
SinI GGWCC 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 1653
SmoI CTYRAG 1 cut(s) 1653
SpeI ACTAGT 2 cut(s) 212, 653
Sse9I AATT 6 cut(s) 696, 1285, 1308, 1370, 1406, 1595
SsiI CCGC 5 cut(s) 116, 267, 714, 1270, 1485
SspI AATATT 1 cut(s) 1536
SspMI CTAG 3 cut(s) 213, 654, 1973
SstI GAGCTC 1 cut(s) 1586
StyD4I CCNGG 3 cut(s) 1686, 1914, 1981
StyI CCWWGG 3 cut(s) 486, 1561, 1662
TaaI ACNGT 3 cut(s) 1756, 1847, 1874
TaiI ACGT 1 cut(s) 1951
TaqI TCGA 4 cut(s) 36, 1175, 1543, 1958
TasI AATT 6 cut(s) 696, 1285, 1308, 1370, 1406, 1595
TatI WGTACW 2 cut(s) 151, 1756
TauI GCSGC 1 cut(s) 1488
TfiI GAWTC 7 cut(s) 332, 449, 458, 740, 866, 1079, 1172
Tru1I TTAA 4 cut(s) 417, 1293, 1409, 1722
Tru9I TTAA 4 cut(s) 417, 1293, 1409, 1722
TscAI CASTG 4 cut(s) 636, 1852, 1879, 2014
TseFI GTSAC 2 cut(s) 967, 995
Tsp45I GTSAC 2 cut(s) 967, 995
TspDTI ATGAA 8 cut(s) 231, 354, 462, 471, 588, 888, 1083, 1131
TspGWI ACGGA 1 cut(s) 1310
TspRI CASTG 4 cut(s) 636, 1852, 1879, 2014
VpaK11BI GGWCC 1 cut(s) 623
XagI CCTNNNNNAGG 1 cut(s) 1986
XapI RAATTY 3 cut(s) 1285, 1370, 1595
XceI RCATGY 1 cut(s) 1367
XcmI CCANNNNNNNNNTGG 1 cut(s) 1733
XmiI GTMKAC 1 cut(s) 1529
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 3 cut(s) 213, 654, 1973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.