Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008499

Physical Location & Seq

Genomic Coordinates Reverse (-)

18179250 .. 18182510

Gene Structure 3261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGCTTCTGCAATTGTTGAACCACCTGACCCAGAAGTTCTTGAAATCGACCCAACTTGTCGATATATTCGGTTTTAAGGGATTCGACGAAGTAGATGGGATTGAAGTAGCGTGGAATCAAGTAAGGATCGACGATCTTTTGCAATCACCAGATTGTCTAGAGAGGCTATATTCCGAAGTGCGGCTTTTGAAATCTCTGAAGCATAAAAACATCATAAGGTTTTATAACTCGTGGATCGATGACAAGAACAAGACGGTTAACATAATTACCGAGTTGTTCACTTCAGGAAGTCTCCGGCAGTACCGTAAGAAACATAGAAAGGTGAATATGAAGGCTGTCAAGTGTTGGGCGAGACAGATTTTAACGGGATTGAAATATCTACATAGTCAAGATCCGCCGATAATACACCGAGATATCAAATGTGACAACATTTTTATCAACGGTAATCATGGAGAAGTGAAAATAGGAGATCTTGGTTTAGCTACTGTCATGGAACAAGCTAATGCCAAAAGTGTGATTGGAACACCGGAGTTTATGGCGCCTGAGCTTTACGATGAGAACTACAACGAGCTCGCTGATATATATTCGTTCGGGATGTGTATGTTGGAAATGGTGACTTTTGAATATCCTTATTGTGAGTGTAGAAACTCTGCTCAAATCTACAAGAAAGTTTCATCGGGGATCAAACCAGCTTCACTATCAAAGGTTAAAGATCCAGAGGTAATGAAATTTATCGAGAAATGTTTATTGCCAGCTTCCGAAAGGTTATCGGCAGAGGAGCTTTTATTGGATTCTTTTCTCAATGTGAACGGTTTAGTTATGAACAATCCATTACCGCTTCCCGACATTGTAATGCCGAAAGAAGGATCATTCGGTGAACGTTGTCTTATGTCTGAAGGACCACCTAATGCTCGGAATAGAACGATGTCAATGAATCTTGACGAAGACAATAACCTTCCTATTGTTATTTCAAGCAACAATTCAGGAACAAACTGTATTGAGGTTAGACGGGCAAAGCGAGGAAACTTTTTTGTCCTTAAAGGTGAAGAGAATGATGAGAACTCTGTCTCATTAATTCTTCGTATAGTCGATGAAAATGGGCGTGTGAGGAACATTCATTTTCTATTCTTTCAAGAAGGTGACACTGCTTCTAATGTATCTAGTGAGATGGTTGAACAGCTTGAATTGACGGATAAAAACGTAAAGTTTATAGCGGAATTGATTGACGTGTTACTCGTCAATTTGATACCGAATTGGAAAACCGATGTAGCTGTCGATCATCTAATTCATCCGCAACAGAACCAGAGCTCCAAGGATAATCATCAAAACGGTGCAAGTTCTCAAGCTGGTGAATCCATTAGCCACTCTTTGTCCTCTGATTATTGCCCACGATCCGATGATGAGGCAAACCCGACCGTAGCTGCAACAACAGAAGATCAAGAAGCAGAGAAACCAGGAAGCTTGGAGGAAGAAGAAGAAGATGAGAGGTTAAAAGAGGAGTTAGAAAAGATAGAAGAACGGTTCAGAGAAGAGATGAAAGAGATAACGAGGAAAAGAGAAGAAGCAACAATGGAGACCAAAAATAGATTTTTCGAGAAGAAGATGCAACAAGTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

539

Amino Acids

61.69

Weight (kDa)

5.1

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 157	1.5e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 146	5.8e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT3G18750 AT3G18750 AT3G18750 AT3G18750 AT3G18750 AT3G18750
fragaria_vesca	FvH4_1g23971
rosa_chinensis	RchiOBHm_Chr2g0120101
rosa_laevigata	RLG00000018520
rosa_multiflora	Rmu_sc0010863.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123730
rosa_rugosa	Rorug02G0226800
rosa_samantha	Rh2AG283300 Rh2BG294600 Rh2DG308300
rosa_wichuraiana	Rw2G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	538
AciI	CCGC	5 cut(s)	181, 395, 836, 1214, 1292
AclI	AACGTT	1 cut(s)	880
AclWI	GGATC	7 cut(s)	134, 242, 386, 689, 707, 874, 1386
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	3 cut(s)	218, 267, 915
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	180, 863
AflIII	ACRYGT	1 cut(s)	1227
AjiI	CACGTC	1 cut(s)	1228
AjnI	CCWGG	1 cut(s)	1453
AloI	GAACNNNNNNTCC	2 cut(s)	1292, 1324
Alw21I	GWGCWC	2 cut(s)	573, 1310
Alw26I	GTCTC	4 cut(s)	296, 346, 1072, 1568
AlwI	GGATC	7 cut(s)	134, 242, 386, 689, 707, 874, 1386
ApeKI	GCWGC	1 cut(s)	1421
ApoI	RAATTY	1 cut(s)	728
AseI	ATTAAT	1 cut(s)	1073
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	899
AsuHPI	GGTGA	7 cut(s)	138, 334, 625, 887, 1055, 1151, 1361
AvaII	GGWCC	1 cut(s)	899
BanI	GGYRCC	1 cut(s)	538
BanII	GRGCYC	2 cut(s)	573, 1310
BauI	CACGAG	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	2 cut(s)	573, 1310
BbvI	GCAGC	1 cut(s)	1408
BccI	CCATC	2 cut(s)	89, 1162
BciT130I	CCWGG	1 cut(s)	1455
BcoDI	GTCTC	4 cut(s)	296, 346, 1072, 1568
BfaI	CTAG	2 cut(s)	158, 1161
BfoI	RGCGCY	1 cut(s)	542
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	2 cut(s)	182, 1422
BlsI	GCNGC	2 cut(s)	183, 1423
Bme1390I	CCNGG	1 cut(s)	1455
Bme18I	GGWCC	1 cut(s)	899
BmgBI	CACGTC	1 cut(s)	1228
BmgT120I	GGNCC	1 cut(s)	899
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	1455
BmsI	GCATC	1 cut(s)	1593
BpiI	GAAGAC	1 cut(s)	951
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	1326
Bsa29I	ATCGAT	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	1320
BsaHI	GRCGYC	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	1568
BsaJI	CCNNGG	1 cut(s)	1311
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	1292, 1322
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 863
Bse8I	GATNNNNATC	1 cut(s)	1320
BseBI	CCWGG	1 cut(s)	1455
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	1311
BseGI	GGATG	2 cut(s)	600, 1288
BseJI	GATNNNNATC	1 cut(s)	1320
BseLI	CCNNNNNNNGG	2 cut(s)	180, 863
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	791, 1511
BseXI	GCAGC	1 cut(s)	1408
Bsh1285I	CGRYCG	1 cut(s)	1416
BshNI	GGYRCC	1 cut(s)	538
BshVI	ATCGAT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	1416
BsiHKAI	GWGCWC	2 cut(s)	573, 1310
BsiSI	CCGG	2 cut(s)	295, 527
BslI	CCNNNNNNNGG	2 cut(s)	180, 863
BsmAI	GTCTC	4 cut(s)	296, 346, 1072, 1568
Bso31I	GGTCTC	1 cut(s)	1568
Bsp1286I	GDGCHC	2 cut(s)	573, 1310
BspACI	CCGC	5 cut(s)	181, 395, 836, 1214, 1292
BspCNI	CTCAG	1 cut(s)	535
BspDI	ATCGAT	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	7 cut(s)	134, 242, 386, 689, 707, 874, 1386
BspT107I	GGYRCC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	1568
BssECI	CCNNGG	1 cut(s)	1311
BssNI	GRCGYC	1 cut(s)	539
BssSI	CACGAG	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	1311
Bst2BI	CACGAG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	1455
Bst4CI	ACNGT	9 cut(s)	256, 305, 443, 487, 812, 995, 1331, 1417, 1521
Bst6I	CTCTTC	2 cut(s)	1041, 1524
BstACI	GRCGYC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	573, 753
BstDEI	CTNAG	1 cut(s)	543
BstF5I	GGATG	2 cut(s)	600, 1288
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstMAI	GTCTC	4 cut(s)	296, 346, 1072, 1568
BstMCI	CGRYCG	1 cut(s)	1416
BstNI	CCWGG	1 cut(s)	1455
BstSCI	CCNGG	1 cut(s)	1453
BstV1I	GCAGC	1 cut(s)	1408
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	3 cut(s)	391, 469, 712
BstYI	RGATCY	3 cut(s)	391, 469, 712
Bsu15I	ATCGAT	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	1228
BtsCI	GGATG	2 cut(s)	600, 1288
BtsI	GCAGTG	1 cut(s)	1143
BtsIMutI	CAGTG	1 cut(s)	1143
Cac8I	GCNNGC	2 cut(s)	573, 753
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	899
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	449, 490
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	543
DinI	GGCGCC	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	1041, 1524
EarI	CTCTTC	2 cut(s)	1041, 1524
EciI	GGCGGA	1 cut(s)	384
Ecl136II	GAGCTC	2 cut(s)	571, 1308
Eco130I	CCWWGG	1 cut(s)	1311
Eco24I	GRGCYC	2 cut(s)	573, 1310
Eco31I	GGTCTC	1 cut(s)	1568
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	899
Eco53kI	GAGCTC	2 cut(s)	571, 1308
Eco57I	CTGAAG	3 cut(s)	218, 267, 915
EcoICRI	GAGCTC	2 cut(s)	571, 1308
EcoRII	CCWGG	1 cut(s)	1453
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	1311
EcoT38I	GRGCYC	2 cut(s)	573, 1310
EgeI	GGCGCC	1 cut(s)	540
EheI	GGCGCC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	1311
FaeI	CATG	2 cut(s)	452, 493
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	2 cut(s)	448, 489
Fnu4HI	GCNGC	2 cut(s)	182, 1422
FokI	GGATG	2 cut(s)	607, 1275
FriOI	GRGCYC	2 cut(s)	573, 1310
Fsp4HI	GCNGC	2 cut(s)	182, 1422
FspBI	CTAG	2 cut(s)	158, 1161
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	2 cut(s)	182, 1422
HaeII	RGCGCY	1 cut(s)	542
HapII	CCGG	2 cut(s)	295, 527
HhaI	GCGC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	452, 493
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	1459
HinfI	GANTC	5 cut(s)	81, 115, 791, 934, 1352
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	2 cut(s)	295, 527
HphI	GGTGA	7 cut(s)	138, 334, 625, 887, 1055, 1151, 1361
Hpy166II	GTNNAC	4 cut(s)	259, 279, 808, 878
Hpy188I	TCNGA	8 cut(s)	175, 198, 760, 895, 915, 1378, 1396, 1526
Hpy8I	GTNNAC	4 cut(s)	259, 279, 808, 878
Hpy99I	CGWCG	2 cut(s)	89, 134
HpyAV	CCTTC	5 cut(s)	325, 857, 890, 965, 1130
HpyCH4III	ACNGT	9 cut(s)	256, 305, 443, 487, 812, 995, 1331, 1417, 1521
HpyCH4IV	ACGT	3 cut(s)	880, 1200, 1227
HpyCH4V	TGCA	5 cut(s)	10, 142, 1334, 1424, 1606
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	3 cut(s)	880, 1200, 1227
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	452, 493
HspAI	GCGC	1 cut(s)	539
KasI	GGCGCC	1 cut(s)	538
KspAI	GTTAAC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	778, 1313
Lsp1109I	GCAGC	1 cut(s)	1408
LweI	GCATC	1 cut(s)	1593
MaeI	CTAG	2 cut(s)	158, 1161
MaeII	ACGT	3 cut(s)	880, 1200, 1227
MaeIII	GTNAC	4 cut(s)	422, 613, 1139, 1230
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	3 cut(s)	391, 469, 712
MhlI	GDGCHC	2 cut(s)	573, 1310
Mly113I	GGCGCC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	585
MseI	TTAA	7 cut(s)	75, 258, 362, 708, 1038, 1073, 1490
MslI	CAYNNNNRTG	1 cut(s)	851
MspI	CCGG	2 cut(s)	295, 527
MspR9I	CCNGG	1 cut(s)	1455
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	1455
NarI	GGCGCC	1 cut(s)	539
NlaIII	CATG	2 cut(s)	452, 493
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	3 cut(s)	422, 613, 1139
PcsI	WCGNNNNNNNCGW	2 cut(s)	1015, 1233
PfeI	GAWTC	5 cut(s)	81, 115, 791, 934, 1352
PkrI	GCNGC	2 cut(s)	183, 1423
PluTI	GGCGCC	1 cut(s)	542
PshBI	ATTAAT	1 cut(s)	1073
PsiI	TTATAA	1 cut(s)	225
Psp124BI	GAGCTC	2 cut(s)	573, 1310
Psp1406I	AACGTT	1 cut(s)	880
Psp6I	CCWGG	1 cut(s)	1453
PspGI	CCWGG	1 cut(s)	1453
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	899
PsuI	RGATCY	3 cut(s)	391, 469, 712
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	851
SacI	GAGCTC	2 cut(s)	573, 1310
SaqAI	TTAA	7 cut(s)	75, 258, 362, 708, 1038, 1073, 1490
SatI	GCNGC	2 cut(s)	182, 1422
Sau96I	GGNCC	1 cut(s)	899
ScrFI	CCNGG	1 cut(s)	1455
SduI	GDGCHC	2 cut(s)	573, 1310
SfaNI	GCATC	1 cut(s)	1593
SfoI	GGCGCC	1 cut(s)	540
SinI	GGWCC	1 cut(s)	899
SmiMI	CAYNNNNRTG	1 cut(s)	851
SmlI	CTYRAG	1 cut(s)	1341
SmoI	CTYRAG	1 cut(s)	1341
SsiI	CCGC	5 cut(s)	181, 395, 836, 1214, 1292
SspDI	GGCGCC	1 cut(s)	538
SspMI	CTAG	2 cut(s)	158, 1161
SstI	GAGCTC	2 cut(s)	573, 1310
StyD4I	CCNGG	1 cut(s)	1453
StyI	CCWWGG	1 cut(s)	1311
TaaI	ACNGT	9 cut(s)	256, 305, 443, 487, 812, 995, 1331, 1417, 1521
TaiI	ACGT	3 cut(s)	883, 1203, 1230
TaqI	TCGA	9 cut(s)	47, 60, 84, 129, 237, 735, 1089, 1275, 1593
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	5 cut(s)	81, 115, 791, 934, 1352
Tru1I	TTAA	7 cut(s)	75, 258, 362, 708, 1038, 1073, 1490
Tru9I	TTAA	7 cut(s)	75, 258, 362, 708, 1038, 1073, 1490
TscAI	CASTG	1 cut(s)	1150
TseFI	GTSAC	3 cut(s)	422, 613, 1139
TseI	GCWGC	1 cut(s)	1421
Tsp45I	GTSAC	3 cut(s)	422, 613, 1139
TspDTI	ATGAA	9 cut(s)	344, 663, 740, 836, 947, 1106, 1107, 1277, 1550
TspGWI	ACGGA	1 cut(s)	1205
TspRI	CASTG	1 cut(s)	1150
VpaK11BI	GGWCC	1 cut(s)	899
VspI	ATTAAT	1 cut(s)	1073
XapI	RAATTY	1 cut(s)	728
XbaI	TCTAGA	1 cut(s)	157
XspI	CTAG	2 cut(s)	158, 1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.