Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008499

Physical Location & Seq

Genomic Coordinates Reverse (-)

22305713 .. 22311218

Gene Structure 5506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0226800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGGAACTTGTTCTTAGCAAATGGGTTTGCGCATTTCTATTCTGCTCTTGTCTCATCTTCTCTCCCATATACTCAGTGGTGGGATTACATGGTGACTCTAAAGTGAGAGCAGTAAATTTGGGAGGGTGGTTGGTAGTGGAAGGTTGGATCAAGCCTTCACTTTTTGATGGCATTCCCAACGGAGATATGCTTGATGGAACAGTGGTACAATTAAAGTCGGTAACTTTGGATAAGTATGTCTCTGCAGAAAATGGGGGAGGGGCCAATGTCTCTGTTAGTAGAGATGCTGCATCTTCGTGGGAAACGCTTAGGTTATGGAGAGTTTCTGAAACAGAATTTCATTTCCGCACTTCGCTTGGACAGTTTCTAACTTGTGATGGTGGTGACGGTTGCTTTATTTCTGCAACTGCAGTATCACCTTCGACATCATTTTTCGTTGAAAGAAATAACGGGAGGGTTCACATCAAAACAATGAGTGGCACATATTTGCAGGCTACAATGGCAAATCAGCTTGTGGCAAACTATCCAGGGAAACCAGGATGGGATGATAATGCAGCCACATTTGAAATGACCATTGTTGCTAATAACTTGCATGGAGACTACCAGCTTGCAAATGGATATGGACACAATATGGACAAAGCAGTTCTCAAGAGGCATAGGAACAGTTTCATCACTATAGGAGATTTCATTTTTCTGTCTAGACATGGAATAAATACTGTGAGGATCCCTGTTGGCTGGTGGATTGCTTATGATCCAGATCCTCCTGCACCATTTATTGGTGGCACTTTGGAAGCTCTAGACAATGCATTCTCATGGGCACAATCATATAATATTAGGTGCATCATTGACCTTCATGCGGCTCCTGGCTCTCAGAATGGGATGGAACATAGTGCTAGTAGGGATGGTTCAACTGATTGGCCTACTCCAGATTCCATTTCACAAACATTGCACGTTATAGACTTTCTAATTTCCAGGTATGCAAGACAGCCTGCTTTGCTGGGAATTGAGCTTTTGAATGAACCATCTGCTGCTACTGTTCCATTGGACAGTTTAGTTTCGTATTACAAACAAGGTTATGAAGTTGTTCGGAAATACTCGTCAACAACTTATGTAATAATTTGTCAAAGAATTGGCAATGCAGATCCATTGGAACTTTTTCAGGCTGACATTGGCTCACATAATATTGTGGTGGATTTGCATTATTACAATCTTTTTGACAATTACTTTGTCAACATGAGCCCTACGGATAATATACAATTCATATACAAGAGCAGGGAAACTCAATTGCAGGCCCTGAACAGTGCAAACGGTCCACTTGTTTTTATTGGAGAGTGGGTCAACGAGTGGAATGTAACAAGTGCCTCTCAGACAGATTATCAAGAGTTTGGGAGGGTCCAGTTAGAGGTTTACAATGCTGCTTCATTTGGGTGGGCTTACTGGACACTGAAGAATGATAGACCTCACTGGGATTTTGAATGGAACATTAGAAACAATTATCTTCGATTGAGTAGTTCGCCCAACATACGGAATGTTAACAGTTTAGTGCTGCTTGTATTACTGTTCTATCTGCATCATATCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_2 TPR_7 TPR_8

Protein Analysis

527

Amino Acids

59.07

Weight (kDa)

5.49

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7910	PF25490	60 - 193	1.3e-47	Domain of unknown function (DUF7910)
Cellulase	PF00150	233 - 485	5.1e-21	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT3G18750 AT3G18750 AT3G18750 AT3G18750 AT3G18750 AT3G18750
fragaria_vesca	FvH4_1g23971
rosa_chinensis	RchiOBHm_Chr2g0120101
rosa_laevigata	RLG00000018520
rosa_multiflora	Rmu_sc0010863.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123730
rosa_rugosa	Rorug02G0226800
rosa_samantha	Rh2AG283300 Rh2BG294600 Rh2DG308300
rosa_wichuraiana	Rw2G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	776
AciI	CCGC	2 cut(s)	346, 857
AclWI	GGATC	6 cut(s)	155, 718, 731, 746, 752, 1136
AcsI	RAATTY	2 cut(s)	115, 335
AcuI	CTGAAG	1 cut(s)	1466
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	4 cut(s)	776, 856, 1402, 1524
AgsI	TTSAA	5 cut(s)	440, 566, 909, 1015, 1475
AjnI	CCWGG	4 cut(s)	526, 535, 862, 971
AluBI	AGCT	4 cut(s)	511, 607, 794, 1009
AluI	AGCT	4 cut(s)	511, 607, 794, 1009
Alw26I	GTCTC	4 cut(s)	56, 244, 274, 591
AlwI	GGATC	6 cut(s)	155, 718, 731, 746, 752, 1136
AlwNI	CAGNNNCTG	1 cut(s)	1294
AoxI	GGCC	3 cut(s)	261, 917, 1290
ApeKI	GCWGC	5 cut(s)	287, 554, 1028, 1415, 1546
ApoI	RAATTY	2 cut(s)	115, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	1208, 1240
Asp700I	GAANNNNTTC	4 cut(s)	9, 665, 1083, 1155
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	4 cut(s)	261, 1291, 1310, 1393
AsuHPI	GGTGA	3 cut(s)	104, 395, 408
AvaII	GGWCC	2 cut(s)	1310, 1393
BaeGI	GKGCMC	1 cut(s)	820
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BamHI	GGATCC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	1241
BbvI	GCAGC	5 cut(s)	274, 566, 1015, 1402, 1533
BccI	CCATC	7 cut(s)	161, 188, 371, 534, 874, 896, 1030
BciT130I	CCWGG	4 cut(s)	528, 537, 864, 973
BcoDI	GTCTC	4 cut(s)	56, 244, 274, 591
BfaI	CTAG	3 cut(s)	699, 797, 894
BfmI	CTRYAG	3 cut(s)	243, 408, 675
BisI	GCNGC	6 cut(s)	288, 555, 858, 1029, 1416, 1547
BlsI	GCNGC	6 cut(s)	289, 556, 859, 1030, 1417, 1548
Bme1390I	CCNGG	4 cut(s)	528, 537, 864, 973
Bme18I	GGWCC	2 cut(s)	1310, 1393
BmgT120I	GGNCC	4 cut(s)	261, 1291, 1310, 1393
BmiI	GGNNCC	4 cut(s)	262, 725, 861, 1394
BmrFI	CCNGG	4 cut(s)	528, 537, 864, 973
BmrI	ACTGGG	1 cut(s)	1474
BmsI	GCATC	4 cut(s)	274, 299, 849, 1579
BmuI	ACTGGG	1 cut(s)	1474
BpmI	CTGGAG	1 cut(s)	909
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	1320, 1350
Bsc4I	CCNNNNNNNGG	4 cut(s)	776, 856, 1402, 1524
Bse1I	ACTGG	3 cut(s)	1396, 1442, 1469
Bse3DI	GCAATG	2 cut(s)	944, 1141
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	4 cut(s)	528, 537, 864, 973
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	4 cut(s)	545, 550, 885, 907
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	4 cut(s)	776, 856, 1402, 1524
BseMI	GCAATG	2 cut(s)	944, 1141
BseMII	CTCAG	3 cut(s)	87, 884, 1379
BseNI	ACTGG	3 cut(s)	1396, 1442, 1469
BseSI	GKGCMC	1 cut(s)	820
BseXI	GCAGC	5 cut(s)	274, 566, 1015, 1402, 1533
BseYI	CCCAGC	1 cut(s)	997
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	263, 919, 1292
BslI	CCNNNNNNNGG	4 cut(s)	776, 856, 1402, 1524
BsmAI	GTCTC	4 cut(s)	56, 244, 274, 591
BsmI	GAATGC	2 cut(s)	171, 806
BsnI	GGCC	3 cut(s)	263, 919, 1292
Bsp1286I	GDGCHC	2 cut(s)	820, 1241
Bsp143I	GATC	5 cut(s)	147, 723, 751, 757, 1141
BspACI	CCGC	2 cut(s)	346, 857
BspANI	GGCC	3 cut(s)	263, 919, 1292
BspCNI	CTCAG	3 cut(s)	86, 883, 1378
BspLI	GGNNCC	4 cut(s)	262, 725, 861, 1394
BspMAI	CTGCAG	2 cut(s)	247, 412
BspPI	GGATC	6 cut(s)	155, 718, 731, 746, 752, 1136
BsrDI	GCAATG	2 cut(s)	944, 1141
BsrI	ACTGG	3 cut(s)	1396, 1442, 1469
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	5 cut(s)	147, 723, 751, 757, 1141
Bst2UI	CCWGG	4 cut(s)	528, 537, 864, 973
BstC8I	GCNNGC	4 cut(s)	492, 609, 990, 1290
BstDEI	CTNAG	5 cut(s)	14, 73, 308, 870, 1365
BstF5I	GGATG	4 cut(s)	545, 550, 885, 907
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	5 cut(s)	150, 726, 754, 760, 1144
BstMAI	GTCTC	4 cut(s)	56, 244, 274, 591
BstMBI	GATC	5 cut(s)	147, 723, 751, 757, 1141
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 994
BstNI	CCWGG	4 cut(s)	528, 537, 864, 973
BstSCI	CCNGG	4 cut(s)	526, 535, 862, 971
BstSFI	CTRYAG	3 cut(s)	243, 408, 675
BstSLI	GKGCMC	1 cut(s)	820
BstV1I	GCAGC	5 cut(s)	274, 566, 1015, 1402, 1533
BstX2I	RGATCY	3 cut(s)	723, 757, 1141
BstYI	RGATCY	3 cut(s)	723, 757, 1141
BsuRI	GGCC	3 cut(s)	263, 919, 1292
BtsCI	GGATG	4 cut(s)	545, 550, 885, 907
BtsIMutI	CAGTG	5 cut(s)	81, 207, 1306, 1442, 1462
Cac8I	GCNNGC	4 cut(s)	492, 609, 990, 1290
CaiI	CAGNNNCTG	1 cut(s)	1294
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	4 cut(s)	261, 1291, 1310, 1393
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	6 cut(s)	89, 593, 704, 813, 854, 1234
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	5 cut(s)	14, 73, 308, 870, 1365
DpnI	GATC	5 cut(s)	149, 725, 753, 759, 1143
DpnII	GATC	5 cut(s)	147, 723, 751, 757, 1141
Eco24I	GRGCYC	1 cut(s)	1241
Eco47I	GGWCC	2 cut(s)	1310, 1393
Eco57I	CTGAAG	1 cut(s)	1466
EcoO109I	RGGNCCY	1 cut(s)	1291
EcoRII	CCWGG	4 cut(s)	526, 535, 862, 971
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	1241
FaeI	CATG	6 cut(s)	92, 596, 707, 816, 857, 1237
FatI	CATG	6 cut(s)	88, 592, 703, 812, 853, 1233
Fnu4HI	GCNGC	6 cut(s)	288, 555, 858, 1029, 1416, 1547
FokI	GGATG	4 cut(s)	552, 557, 892, 914
FriOI	GRGCYC	1 cut(s)	1241
Fsp4HI	GCNGC	6 cut(s)	288, 555, 858, 1029, 1416, 1547
FspBI	CTAG	3 cut(s)	699, 797, 894
FspI	TGCGCA	1 cut(s)	31
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	6 cut(s)	288, 555, 858, 1029, 1416, 1547
GsaI	CCCAGC	1 cut(s)	1001
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	3 cut(s)	263, 919, 1292
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	92, 596, 707, 816, 857, 1237
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	4 cut(s)	1101, 1231, 1339, 1534
HindII	GTYRAC	4 cut(s)	1101, 1231, 1339, 1534
HinfI	GANTC	2 cut(s)	95, 929
HpaI	GTTAAC	1 cut(s)	1534
HphI	GGTGA	3 cut(s)	104, 395, 408
Hpy166II	GTNNAC	7 cut(s)	460, 1101, 1231, 1313, 1339, 1408, 1534
Hpy188I	TCNGA	4 cut(s)	328, 873, 1089, 1368
Hpy188III	TCNNGA	6 cut(s)	649, 699, 755, 797, 926, 1379
Hpy8I	GTNNAC	7 cut(s)	460, 1101, 1231, 1313, 1339, 1408, 1534
HpyAV	CCTTC	4 cut(s)	134, 165, 429, 860
HpyCH4IV	ACGT	1 cut(s)	951
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 994
HpyF3I	CTNAG	5 cut(s)	14, 73, 308, 870, 1365
HpySE526I	ACGT	1 cut(s)	951
Hsp92II	CATG	6 cut(s)	92, 596, 707, 816, 857, 1237
HspAI	GCGC	1 cut(s)	30
KspAI	GTTAAC	1 cut(s)	1534
Kzo9I	GATC	5 cut(s)	147, 723, 751, 757, 1141
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	5 cut(s)	274, 566, 1015, 1402, 1533
LweI	GCATC	4 cut(s)	274, 299, 849, 1579
MaeI	CTAG	3 cut(s)	699, 797, 894
MaeII	ACGT	1 cut(s)	951
MaeIII	GTNAC	4 cut(s)	92, 220, 383, 1351
MalI	GATC	5 cut(s)	149, 725, 753, 759, 1143
MboI	GATC	5 cut(s)	147, 723, 751, 757, 1141
MboII	GAAGA	4 cut(s)	49, 285, 1459, 1490
MfeI	CAATTG	1 cut(s)	1283
MflI	RGATCY	3 cut(s)	723, 757, 1141
MhlI	GDGCHC	2 cut(s)	820, 1241
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	125
Mph1103I	ATGCAT	1 cut(s)	808
MroXI	GAANNNNTTC	4 cut(s)	9, 665, 1083, 1155
MseI	TTAA	2 cut(s)	212, 1533
MslI	CAYNNNNRTG	3 cut(s)	295, 811, 1426
MspR9I	CCNGG	4 cut(s)	528, 537, 864, 973
MunI	CAATTG	1 cut(s)	1283
Mva1269I	GAATGC	2 cut(s)	171, 806
MvaI	CCWGG	4 cut(s)	528, 537, 864, 973
MwoI	GCNNNNNNNGC	2 cut(s)	500, 994
NdeII	GATC	5 cut(s)	147, 723, 751, 757, 1141
NlaIII	CATG	6 cut(s)	92, 596, 707, 816, 857, 1237
NlaIV	GGNNCC	4 cut(s)	262, 725, 861, 1394
NmuCI	GTSAC	2 cut(s)	92, 383
NsbI	TGCGCA	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	808
PctI	GAATGC	2 cut(s)	171, 806
PdmI	GAANNNNTTC	4 cut(s)	9, 665, 1083, 1155
PfeI	GAWTC	1 cut(s)	929
PflMI	CCANNNNNTGG	1 cut(s)	776
PkrI	GCNGC	6 cut(s)	289, 556, 859, 1030, 1417, 1548
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp6I	CCWGG	4 cut(s)	526, 535, 862, 971
PspFI	CCCAGC	1 cut(s)	997
PspGI	CCWGG	4 cut(s)	526, 535, 862, 971
PspN4I	GGNNCC	4 cut(s)	262, 725, 861, 1394
PspPI	GGNCC	4 cut(s)	261, 1291, 1310, 1393
PsrI	GAACNNNNNNTAC	2 cut(s)	889, 921
PstI	CTGCAG	2 cut(s)	247, 412
PstNI	CAGNNNCTG	1 cut(s)	1294
PsuI	RGATCY	3 cut(s)	723, 757, 1141
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	3 cut(s)	295, 811, 1426
SaqAI	TTAA	2 cut(s)	212, 1533
SatI	GCNGC	6 cut(s)	288, 555, 858, 1029, 1416, 1547
Sau3AI	GATC	5 cut(s)	147, 723, 751, 757, 1141
Sau96I	GGNCC	4 cut(s)	261, 1291, 1310, 1393
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	4 cut(s)	528, 537, 864, 973
SduI	GDGCHC	2 cut(s)	820, 1241
SfaNI	GCATC	4 cut(s)	274, 299, 849, 1579
SfcI	CTRYAG	3 cut(s)	243, 408, 675
SinI	GGWCC	2 cut(s)	1310, 1393
SmiMI	CAYNNNNRTG	3 cut(s)	295, 811, 1426
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
SsiI	CCGC	2 cut(s)	346, 857
SspI	AATATT	2 cut(s)	832, 1183
SspMI	CTAG	3 cut(s)	699, 797, 894
StyD4I	CCNGG	4 cut(s)	526, 535, 862, 971
TaiI	ACGT	1 cut(s)	954
TaqI	TCGA	2 cut(s)	422, 1501
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	1 cut(s)	929
Tru1I	TTAA	2 cut(s)	212, 1533
Tru9I	TTAA	2 cut(s)	212, 1533
TscAI	CASTG	5 cut(s)	81, 207, 1306, 1449, 1469
TseFI	GTSAC	2 cut(s)	92, 383
TseI	GCWGC	5 cut(s)	287, 554, 1028, 1415, 1546
Tsp45I	GTSAC	2 cut(s)	92, 383
TspDTI	ATGAA	8 cut(s)	329, 658, 676, 842, 1032, 1092, 1249, 1410
TspGWI	ACGGA	3 cut(s)	195, 1259, 1540
TspRI	CASTG	5 cut(s)	81, 207, 1306, 1449, 1469
Van91I	CCANNNNNTGG	1 cut(s)	776
VpaK11BI	GGWCC	2 cut(s)	1310, 1393
XapI	RAATTY	2 cut(s)	115, 335
XbaI	TCTAGA	2 cut(s)	698, 796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	73, 611
XmnI	GAANNNNTTC	4 cut(s)	9, 665, 1083, 1155
XspI	CTAG	3 cut(s)	699, 797, 894
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.