Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008499

Physical Location & Seq

Genomic Coordinates Forward (+)

33460271 .. 33464628

Gene Structure 4358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG294600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGATTCATCTAGGAACCCCTGAGTTTATGGCTCCTGAGCTCTATGATGAAAACTATAATGAGTTAGCAGATATATACTCCTTTGGGATGTGCATGCTAGAGATGGTGACTTATGAATACCCTTATAGTGAATGTAGAAACTCAGCTCAAATATATAAGAAGGTTTCATCTGGAATAAAACCCGCTGCCCTTTCCAAGGTAAAAGATCCTGAAATGAAACAATTTATTGAGAAGTGTTTAGTCCCAGCATCCGAAAGGTTGTCAGCAGAAGAGCTTCTGATGGACCCTTTCCTCCAATTGAATGGCTCGGTAAAAAATCGTCCTCTGCCACTTCCAGATATTGTATTGCCGAAAATGGGAGCCTTTGGAGATCGTTGTGTGATGTCGGAAGGACCTTTAAGCGCACGGAACAATGCCTTATCTAAGGATTTTGATGATGGGGAGCCACCAGTGATCAACTTTTTTAGCAACTCTGGTGACGGCGATTCCCATTCCTTTTACGTGGAGGTTCAGAGGTCAAAAAGAGGCAACTTTTTCTTCTTAAAAGGCGAGCATAATGACGAAAACTCCATATCGTTAATACTGAGAATAGCTGATCAGAATGGTCGTGCGAGGAACATTCATTTCTTATTCTATCTCGACAGTGATACAGCACTTTCAGTTTCAAGTGAAATGGTTGAGCAACTCGAACTAGAAGATCATAATGTTATCTTCATAGCAGAGTTGATTGATTTGTTATTGATGAACTTGATATCAGAATGGAAGTGTTGTGTCCGTGTTGATCATTTGGTTGCTCAAAACAGAAAGAATGTGAGCCATCAGAAAGACTCTCAGTCGTCAAAGCCTCAGGAATGCTCTGGCAGATGTCACCAGAATGTTTGTGAGGATGCCAATTCCTCAAAACCACCGATTTGCCCAACTTCTTCCACTTTTGAAGGCTCCATTCCTCCACCAATACTAGAGAGGCCTCCTAATTATGTGAAGGGTGTTCCGGGTTCTAATGCGGTTTTAGCTAGTTCAACCCCCACAGTAGAACGGTATTCTGAGATGTCATGTGCTGCTATGACCCCTAATGACGCTACACATCGATCTCATAATTCATATGCATCCGCAGAATCTGGGTCTTTGGACTTAAATTTTCATTTGCCAAATGGCTACAAGAGTGCAAGTTGTCCAATCAGTGTTTCCTCATTCTGCACTGCAGACGACTTTGAGTTTAAAAAGGAGTTGGAAACGATTGAACTGCAATTCCAGCTGGAACTTCAAGATATATCGAAGAGAAGACATGAAGCTATCAAGGAAACAAGAAAAAGGTTATCCCAGAAAAATATTGAGTTGGTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

448

Amino Acids

50.26

Weight (kDa)

5.18

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 98	4e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	8 - 89	1.3e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT3G18750 AT3G18750 AT3G18750 AT3G18750 AT3G18750 AT3G18750
fragaria_vesca	FvH4_1g23971
rosa_chinensis	RchiOBHm_Chr2g0120101
rosa_laevigata	RLG00000018520
rosa_multiflora	Rmu_sc0010863.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123730
rosa_rugosa	Rorug02G0226800
rosa_samantha	Rh2AG283300 Rh2BG294600 Rh2DG308300
rosa_wichuraiana	Rw2G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	183, 1004, 1110
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	1135
AfiI	CCNNNNNNNGG	2 cut(s)	196, 356
AgsI	TTSAA	6 cut(s)	301, 666, 935, 1020, 1241, 1265
AhdI	GACNNNNNGTC	1 cut(s)	832
AjuI	GAANNNNNNNTTGG	2 cut(s)	1168, 1200
AloI	GAACNNNNNNTCC	2 cut(s)	1233, 1265
AluBI	AGCT	7 cut(s)	40, 146, 274, 593, 1013, 1255, 1292
AluI	AGCT	7 cut(s)	40, 146, 274, 593, 1013, 1255, 1292
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	1118
AoxI	GGCC	1 cut(s)	965
ApeKI	GCWGC	2 cut(s)	185, 1058
ApoI	RAATTY	1 cut(s)	1135
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	283, 392
AsuC2I	CCSGG	1 cut(s)	993
AsuHPI	GGTGA	3 cut(s)	118, 488, 860
AvaII	GGWCC	2 cut(s)	283, 392
AxyI	CCTNAGG	1 cut(s)	846
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	1288
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	172, 1045
BccI	CCATC	4 cut(s)	97, 274, 431, 825
BceAI	ACGGC	1 cut(s)	496
BcgI	CGANNNNNNTGC	2 cut(s)	1225, 1259
BclI	TGATCA	3 cut(s)	453, 595, 781
BcnI	CCSGG	1 cut(s)	993
BfaI	CTAG	6 cut(s)	11, 98, 692, 959, 1014, 1345
BfmI	CTRYAG	1 cut(s)	1200
BisI	GCNGC	2 cut(s)	186, 1059
BlsI	GCNGC	2 cut(s)	187, 1060
Bme1390I	CCNGG	1 cut(s)	993
Bme18I	GGWCC	2 cut(s)	283, 392
BmeRI	GACNNNNNGTC	1 cut(s)	832
BmgT120I	GGNCC	2 cut(s)	283, 392
BmiI	GGNNCC	6 cut(s)	16, 33, 285, 361, 444, 940
BmrFI	CCNGG	1 cut(s)	993
BmsI	GCATC	3 cut(s)	257, 877, 1115
BpiI	GAAGAC	1 cut(s)	1288
Bpu10I	CCTNAGC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	993
Bsa29I	ATCGAT	1 cut(s)	1087
BsaAI	YACGTR	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 356
Bse1I	ACTGG	1 cut(s)	449
Bse21I	CCTNAGG	1 cut(s)	846
BseCI	ATCGAT	1 cut(s)	1087
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	4 cut(s)	93, 248, 892, 1106
BseLI	CCNNNNNNNGG	2 cut(s)	196, 356
BseMII	CTCAG	7 cut(s)	12, 27, 156, 575, 845, 860, 1035
BseNI	ACTGG	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	172, 1045
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	1180
BshFI	GGCC	1 cut(s)	967
BshVI	ATCGAT	1 cut(s)	1087
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	992
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	196, 356
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	857
BsnI	GGCC	1 cut(s)	967
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	7 cut(s)	205, 370, 453, 595, 697, 781, 1088
BspACI	CCGC	3 cut(s)	183, 1004, 1110
BspANI	GGCC	1 cut(s)	967
BspCNI	CTCAG	7 cut(s)	13, 28, 155, 576, 844, 859, 1036
BspDI	ATCGAT	1 cut(s)	1087
BspLI	GGNNCC	6 cut(s)	16, 33, 285, 361, 444, 940
BspMAI	CTGCAG	1 cut(s)	1204
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	7 cut(s)	205, 370, 453, 595, 697, 781, 1088
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	644, 1030, 1038
Bst6I	CTCTTC	2 cut(s)	264, 1271
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	95, 551
BstDEI	CTNAG	8 cut(s)	21, 36, 142, 423, 584, 831, 846, 1044
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	4 cut(s)	93, 248, 892, 1106
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	7 cut(s)	208, 373, 456, 598, 700, 784, 1091
BstMBI	GATC	7 cut(s)	205, 370, 453, 595, 697, 781, 1088
BstMWI	GCNNNNNNNGC	2 cut(s)	1010, 1252
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	991
BstSFI	CTRYAG	1 cut(s)	1200
BstV1I	GCAGC	2 cut(s)	172, 1045
BstV2I	GAAGAC	1 cut(s)	1288
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	1087
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	1 cut(s)	967
BsuTUI	ATCGAT	1 cut(s)	1087
BtsCI	GGATG	4 cut(s)	93, 248, 892, 1106
BtsI	GCAGTG	1 cut(s)	1197
BtsIMutI	CAGTG	4 cut(s)	456, 649, 1186, 1197
Cac8I	GCNNGC	2 cut(s)	95, 551
CaiI	CAGNNNCTG	1 cut(s)	1118
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	283, 392
ClaI	ATCGAT	1 cut(s)	1087
CseI	GACGC	1 cut(s)	1085
CviAII	CATG	3 cut(s)	94, 1053, 1286
DdeI	CTNAG	8 cut(s)	21, 36, 142, 423, 584, 831, 846, 1044
DpnI	GATC	7 cut(s)	207, 372, 455, 597, 699, 783, 1090
DpnII	GATC	7 cut(s)	205, 370, 453, 595, 697, 781, 1088
DraI	TTTAAA	1 cut(s)	1219
DriI	GACNNNNNGTC	1 cut(s)	832
Eam1104I	CTCTTC	2 cut(s)	264, 1271
Eam1105I	GACNNNNNGTC	1 cut(s)	832
EarI	CTCTTC	2 cut(s)	264, 1271
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	967
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	753
Eco47I	GGWCC	2 cut(s)	283, 392
Eco53kI	GAGCTC	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	846
EcoICRI	GAGCTC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	1108
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	97, 1056, 1289
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	3 cut(s)	93, 1052, 1285
FauI	CCCGC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	1102
FbaI	TGATCA	3 cut(s)	453, 595, 781
Fnu4HI	GCNGC	2 cut(s)	186, 1059
FokI	GGATG	4 cut(s)	100, 235, 899, 1093
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	186, 1059
FspBI	CTAG	6 cut(s)	11, 98, 692, 959, 1014, 1345
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	2 cut(s)	186, 1059
GsaI	CCCAGC	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	967
HapII	CCGG	1 cut(s)	992
HgaI	GACGC	1 cut(s)	1085
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	97, 1056, 1289
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	4, 485, 827, 1115
HpaII	CCGG	1 cut(s)	992
HphI	GGTGA	3 cut(s)	118, 488, 860
Hpy188I	TCNGA	8 cut(s)	253, 279, 388, 513, 600, 757, 822, 1045
Hpy188III	TCNNGA	7 cut(s)	35, 171, 209, 335, 638, 848, 1265
HpyAV	CCTTC	4 cut(s)	154, 383, 929, 976
HpyCH4III	ACNGT	3 cut(s)	644, 1030, 1038
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	93, 1106, 1166, 1197, 1202, 1246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1010, 1252
HpyF3I	CTNAG	8 cut(s)	21, 36, 142, 423, 584, 831, 846, 1044
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	97, 1056, 1289
HspAI	GCGC	1 cut(s)	402
Ksp22I	TGATCA	3 cut(s)	453, 595, 781
Kzo9I	GATC	7 cut(s)	205, 370, 453, 595, 697, 781, 1088
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	4 cut(s)	37, 359, 442, 944
Lsp1109I	GCAGC	2 cut(s)	172, 1045
LweI	GCATC	3 cut(s)	257, 877, 1115
MaeI	CTAG	6 cut(s)	11, 98, 692, 959, 1014, 1345
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	3 cut(s)	106, 476, 866
MalI	GATC	7 cut(s)	207, 372, 455, 597, 699, 783, 1090
MboI	GATC	7 cut(s)	205, 370, 453, 595, 697, 781, 1088
MboII	GAAGA	7 cut(s)	281, 529, 703, 707, 915, 1288, 1293
MfeI	CAATTG	1 cut(s)	296
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	7 cut(s)	221, 296, 892, 973, 1096, 1135, 1247
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	2 cut(s)	366, 1209
Mph1103I	ATGCAT	1 cut(s)	1108
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	5 cut(s)	398, 542, 578, 1133, 1218
MslI	CAYNNNNRTG	1 cut(s)	873
MspA1I	CMGCKG	2 cut(s)	185, 1255
MspI	CCGG	1 cut(s)	992
MspR9I	CCNGG	1 cut(s)	993
MunI	CAATTG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	857
MwoI	GCNNNNNNNGC	2 cut(s)	1010, 1252
NciI	CCSGG	1 cut(s)	993
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	7 cut(s)	205, 370, 453, 595, 697, 781, 1088
NlaIII	CATG	3 cut(s)	97, 1056, 1289
NlaIV	GGNNCC	6 cut(s)	16, 33, 285, 361, 444, 940
NmuCI	GTSAC	3 cut(s)	106, 476, 866
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	1 cut(s)	97
PaeI	GCATGC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	857
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	4, 485, 1115
PkrI	GCNGC	2 cut(s)	187, 1060
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
Ppu21I	YACGTR	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	244
PspN4I	GGNNCC	6 cut(s)	16, 33, 285, 361, 444, 940
PspPI	GGNCC	2 cut(s)	283, 392
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	1204
PstNI	CAGNNNCTG	1 cut(s)	1118
PsuI	RGATCY	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	1255
RseI	CAYNNNNRTG	1 cut(s)	873
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	5 cut(s)	398, 542, 578, 1133, 1218
SatI	GCNGC	2 cut(s)	186, 1059
Sau3AI	GATC	7 cut(s)	205, 370, 453, 595, 697, 781, 1088
Sau96I	GGNCC	2 cut(s)	283, 392
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	1 cut(s)	993
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	3 cut(s)	257, 877, 1115
SfcI	CTRYAG	1 cut(s)	1200
SinI	GGWCC	2 cut(s)	283, 392
SmiMI	CAYNNNNRTG	1 cut(s)	873
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	7 cut(s)	221, 296, 892, 973, 1096, 1135, 1247
SseBI	AGGCCT	1 cut(s)	967
SsiI	CCGC	3 cut(s)	183, 1004, 1110
SspI	AATATT	1 cut(s)	1330
SspMI	CTAG	6 cut(s)	11, 98, 692, 959, 1014, 1345
SstI	GAGCTC	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	967
StyD4I	CCNGG	1 cut(s)	991
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	644, 1030, 1038
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	4 cut(s)	639, 687, 1087, 1274
TasI	AATT	7 cut(s)	221, 296, 892, 973, 1096, 1135, 1247
TfiI	GAWTC	3 cut(s)	4, 485, 1115
Tru1I	TTAA	5 cut(s)	398, 542, 578, 1133, 1218
Tru9I	TTAA	5 cut(s)	398, 542, 578, 1133, 1218
TscAI	CASTG	4 cut(s)	456, 649, 1186, 1204
TseFI	GTSAC	3 cut(s)	106, 476, 866
TseI	GCWGC	2 cut(s)	185, 1058
Tsp45I	GTSAC	3 cut(s)	106, 476, 866
TspGWI	ACGGA	2 cut(s)	421, 764
TspRI	CASTG	4 cut(s)	456, 649, 1186, 1204
VpaK11BI	GGWCC	2 cut(s)	283, 392
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	1135
XceI	RCATGY	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	6 cut(s)	11, 98, 692, 959, 1014, 1345
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.