Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008499

Physical Location & Seq

Genomic Coordinates Reverse (-)

57618834 .. 57622629

Gene Structure 3796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGGATTGAGCTATCTCCATAGTCACAACCCACCTATTATGCATAGGGACTTGAAGTGTGATAATATATTTATCAATGGTAACCAAGGAGAAGTTAAAATCGGAGATCTTGGGCTGGCAACTGTTATGGAGCAAGCTACTGCCAAAAGTGTAATTGGAACCCCTGAGTTTATGGCTCCTGAGCTCTATGATGAAAACTATAATGAGTTAGCAGATATATACTCCTTTGGGATGTGCATGCTAGAGATGGTGACTTATGAATACCCTTATAGTGAATGTAGAAACTCAGCTCAAATATATAAGAAGGTTTCATCTGGAATAAAACCCGCTGCCCTTTCCAAGGTAAAAGATCCTGAAATGAAACAATTTATTGAGAAGTGTTTAGTCCCAGCATCCGAAAGGTTGTCAGCAGAACAGCTTCTGATGGACCCTTTCCTCCAATTGAATGGCTCAGTAAAAAATCGTCCTCTGCCACTTCCAGATATTGTATTGCCGAAAATGGGAGCCTTTGGAGATCGTTGTGTGATGTCGGAAGGACCTTTAAGTGCACGGAACAATGCCTTATCTAAGGATTTTGATGATGGGGAGCCACCAGTGATCAACTTTTTTAGCAACTCTGGTGACGGCGAGTCCCATTCCTTTTACGTGGAGGTTCAGAGGTCAAAAAGAGGCAACTTTTTCTTCTTAAAAGGCGAGCATAATGATGAAAACTCCATATCGTTAATACTGAGAATAGCTGATCAGAATGGTCGTGCAAGGAACATTCATTTCTTATTCTATCTCGACAGTGATACAGCACTTTCAGTTTCAAGTGAAATGGTTGAGCAACTCGAACTAGAAGATCATAATGTTATCTTCATAGCAGAGTTGATTGATTTGTTATTGATAAACTTGATATCAGAATGGAAGTGTTGTGTCCGTGTTGATCATTTGGTTGCTCAAAACAGAAAGAATGTGAGCCATCAGAAAGACTATCAGTCGCCAAAGCCTCAGGAATGCTCGGGCAGATGTCACCAGAATGTTTGTGAGGATGCCAATTCCTCAAAACCACCGATTTGCCCAACTTCTTCCACTTTTGAAGGCTCCATTCCTCCACCAATACTAGAGAGGCTTCCTAATTATGTGAAGGGTGTTCCGAGTTCTAATGCGGTTTTAGCTAGTTCAACCACCACAGTAGAACGGTATTCTGAGATGTCATGTGCTTCTATGACCCCTAATGACGCTACACATCGATCTCATAATTCATATGCATCCGCAGAATCTGGGTCTTTGGACTTAAATTTTCATTTGCCAAATGGCTACAAAAGTGCAAGTTGTCCAATCAGTGTTTCCTCATTCTGCACTGCAGACGACTTTGAGTTTAGAAAGGAGTTGGAAACGATTGAACTGCAATTCCAGCTGGAGCTTCAAGATATATCTAAGAGAAGACATGAAGCTCTCAAGGAAACAAGAAAAAGGTTATCCCAGAAAAATACTGAGTTGGTTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

496

Amino Acids

55.63

Weight (kDa)

5.36

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 146	6.1e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 138	1.7e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT1G49160 AT3G18750 AT3G18750 AT3G18750 AT3G18750 AT3G18750 AT3G18750
fragaria_vesca	FvH4_1g23971
rosa_chinensis	RchiOBHm_Chr2g0120101
rosa_laevigata	RLG00000018520
rosa_multiflora	Rmu_sc0010863.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123730
rosa_rugosa	Rorug02G0226800
rosa_samantha	Rh2AG283300 Rh2BG294600 Rh2DG308300
rosa_wichuraiana	Rw2G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	327, 1148, 1254
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	1279
AfiI	CCNNNNNNNGG	2 cut(s)	340, 500
AgsI	TTSAA	7 cut(s)	55, 445, 810, 1079, 1164, 1385, 1409
AhdI	GACNNNNNGTC	2 cut(s)	628, 976
AjuI	GAANNNNNNNTTGG	2 cut(s)	1312, 1344
AloI	GAACNNNNNNTCC	2 cut(s)	1377, 1409
Alw21I	GWGCWC	2 cut(s)	186, 550
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	2 cut(s)	421, 1262
Ama87I	CYCGRG	1 cut(s)	1000
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	1279
Asp700I	GAANNNNTTC	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	427, 536
AsuHPI	GGTGA	3 cut(s)	262, 632, 1004
AvaI	CYCGRG	1 cut(s)	1000
AvaII	GGWCC	2 cut(s)	427, 536
AxyI	CCTNAGG	1 cut(s)	990
BaeGI	GKGCMC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	1432
Bbv12I	GWGCWC	2 cut(s)	186, 550
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	4 cut(s)	241, 418, 575, 969
BceAI	ACGGC	1 cut(s)	640
BcgI	CGANNNNNNTGC	2 cut(s)	1369, 1403
BclI	TGATCA	3 cut(s)	597, 739, 925
BfaI	CTAG	5 cut(s)	242, 836, 1103, 1158, 1489
BfmI	CTRYAG	1 cut(s)	1344
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme18I	GGWCC	2 cut(s)	427, 536
BmeRI	GACNNNNNGTC	2 cut(s)	628, 976
BmeT110I	CYCGRG	1 cut(s)	1000
BmgT120I	GGNCC	2 cut(s)	427, 536
BmiI	GGNNCC	6 cut(s)	160, 177, 429, 505, 588, 1084
BmsI	GCATC	3 cut(s)	401, 1021, 1259
BpiI	GAAGAC	1 cut(s)	1432
BpmI	CTGGAG	1 cut(s)	1421
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	1424
Bsa29I	ATCGAT	1 cut(s)	1231
BsaAI	YACGTR	1 cut(s)	646
BsaJI	CCNNGG	2 cut(s)	85, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 500
Bse1I	ACTGG	1 cut(s)	593
Bse21I	CCTNAGG	1 cut(s)	990
BseCI	ATCGAT	1 cut(s)	1231
BseDI	CCNNGG	2 cut(s)	85, 339
BseGI	GGATG	4 cut(s)	237, 392, 1036, 1250
BseLI	CCNNNNNNNGG	2 cut(s)	340, 500
BseMII	CTCAG	8 cut(s)	156, 171, 300, 465, 719, 1004, 1179, 1467
BseNI	ACTGG	1 cut(s)	593
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	316
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	1324
BshVI	ATCGAT	1 cut(s)	1231
BsiHKAI	GWGCWC	2 cut(s)	186, 550
BsiHKCI	CYCGRG	1 cut(s)	1000
BslFI	GGGAC	3 cut(s)	62, 371, 616
BslI	CCNNNNNNNGG	2 cut(s)	340, 500
BsmFI	GGGAC	3 cut(s)	62, 371, 616
BsmI	GAATGC	1 cut(s)	1001
BsoBI	CYCGRG	1 cut(s)	1000
Bsp1286I	GDGCHC	2 cut(s)	186, 550
Bsp143I	GATC	8 cut(s)	106, 349, 514, 597, 739, 841, 925, 1232
BspACI	CCGC	3 cut(s)	327, 1148, 1254
BspCNI	CTCAG	8 cut(s)	157, 172, 299, 464, 720, 1003, 1180, 1468
BspDI	ATCGAT	1 cut(s)	1231
BspLI	GGNNCC	6 cut(s)	160, 177, 429, 505, 588, 1084
BspMAI	CTGCAG	1 cut(s)	1348
BspPI	GGATC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	85, 339
BssMI	GATC	8 cut(s)	106, 349, 514, 597, 739, 841, 925, 1232
BssT1I	CCWWGG	2 cut(s)	85, 339
Bst4CI	ACNGT	4 cut(s)	124, 788, 1174, 1182
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	117, 135, 239, 695
BstEII	GGTNACC	1 cut(s)	80
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	4 cut(s)	237, 392, 1036, 1250
BstKTI	GATC	8 cut(s)	109, 352, 517, 600, 742, 844, 928, 1235
BstMBI	GATC	8 cut(s)	106, 349, 514, 597, 739, 841, 925, 1232
BstMWI	GCNNNNNNNGC	2 cut(s)	1154, 1396
BstNSI	RCATGY	1 cut(s)	241
BstPI	GGTNACC	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	1344
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	1432
BstX2I	RGATCY	2 cut(s)	106, 349
BstXI	CCANNNNNNTGG	1 cut(s)	446
BstYI	RGATCY	2 cut(s)	106, 349
Bsu15I	ATCGAT	1 cut(s)	1231
Bsu36I	CCTNAGG	1 cut(s)	990
BsuTUI	ATCGAT	1 cut(s)	1231
BtsCI	GGATG	4 cut(s)	237, 392, 1036, 1250
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	4 cut(s)	600, 793, 1330, 1341
Cac8I	GCNNGC	4 cut(s)	117, 135, 239, 695
CaiI	CAGNNNCTG	2 cut(s)	421, 1262
Cfr13I	GGNCC	2 cut(s)	427, 536
ClaI	ATCGAT	1 cut(s)	1231
CseI	GACGC	1 cut(s)	1229
CviAII	CATG	3 cut(s)	238, 1197, 1430
DpnI	GATC	8 cut(s)	108, 351, 516, 599, 741, 843, 927, 1234
DpnII	GATC	8 cut(s)	106, 349, 514, 597, 739, 841, 925, 1232
DriI	GACNNNNNGTC	2 cut(s)	628, 976
Eam1105I	GACNNNNNGTC	2 cut(s)	628, 976
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	85, 339
Eco24I	GRGCYC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	897
Eco47I	GGWCC	2 cut(s)	427, 536
Eco53kI	GAGCTC	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	990
Eco88I	CYCGRG	1 cut(s)	1000
Eco91I	GGTNACC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	536
EcoO65I	GGTNACC	1 cut(s)	80
EcoRV	GATATC	1 cut(s)	897
EcoT14I	CCWWGG	2 cut(s)	85, 339
EcoT22I	ATGCAT	2 cut(s)	45, 1252
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	2 cut(s)	85, 339
FaeI	CATG	3 cut(s)	241, 1200, 1433
FaqI	GGGAC	3 cut(s)	62, 371, 616
FatI	CATG	3 cut(s)	237, 1196, 1429
FauI	CCCGC	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	1246
FbaI	TGATCA	3 cut(s)	597, 739, 925
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	4 cut(s)	244, 379, 1043, 1237
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	5 cut(s)	242, 836, 1103, 1158, 1489
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	1421
HgaI	GACGC	1 cut(s)	1229
Hin1II	CATG	3 cut(s)	241, 1200, 1433
HinfI	GANTC	2 cut(s)	629, 1259
HphI	GGTGA	3 cut(s)	262, 632, 1004
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188III	TCNNGA	7 cut(s)	179, 315, 353, 479, 782, 992, 1409
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	4 cut(s)	298, 527, 1073, 1120
HpyCH4III	ACNGT	4 cut(s)	124, 788, 1174, 1182
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	9 cut(s)	43, 237, 548, 755, 1250, 1310, 1341, 1346, 1390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1154, 1396
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	3 cut(s)	241, 1200, 1433
Ksp22I	TGATCA	3 cut(s)	597, 739, 925
Kzo9I	GATC	8 cut(s)	106, 349, 514, 597, 739, 841, 925, 1232
LmnI	GCTCC	6 cut(s)	130, 181, 503, 586, 1088, 1402
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	3 cut(s)	401, 1021, 1259
MaeI	CTAG	5 cut(s)	242, 836, 1103, 1158, 1489
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	5 cut(s)	23, 80, 250, 620, 1010
MalI	GATC	8 cut(s)	108, 351, 516, 599, 741, 843, 927, 1234
MboI	GATC	8 cut(s)	106, 349, 514, 597, 739, 841, 925, 1232
MboII	GAAGA	5 cut(s)	673, 847, 851, 1059, 1437
MfeI	CAATTG	1 cut(s)	440
MflI	RGATCY	2 cut(s)	106, 349
MhlI	GDGCHC	2 cut(s)	186, 550
MluCI	AATT	8 cut(s)	153, 365, 440, 1036, 1117, 1240, 1279, 1391
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	2 cut(s)	510, 1353
Mph1103I	ATGCAT	2 cut(s)	45, 1252
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	5 cut(s)	96, 542, 686, 722, 1277
MslI	CAYNNNNRTG	2 cut(s)	702, 1017
MspA1I	CMGCKG	2 cut(s)	329, 1399
MunI	CAATTG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	1001
MwoI	GCNNNNNNNGC	2 cut(s)	1154, 1396
NdeI	CATATG	1 cut(s)	1246
NdeII	GATC	8 cut(s)	106, 349, 514, 597, 739, 841, 925, 1232
NlaIII	CATG	3 cut(s)	241, 1200, 1433
NlaIV	GGNNCC	6 cut(s)	160, 177, 429, 505, 588, 1084
NmuCI	GTSAC	4 cut(s)	23, 250, 620, 1010
NsiI	ATGCAT	2 cut(s)	45, 1252
NspI	RCATGY	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	1259
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Ppu21I	YACGTR	1 cut(s)	646
PpuMI	RGGWCCY	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	536
PspEI	GGTNACC	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	388
PspN4I	GGNNCC	6 cut(s)	160, 177, 429, 505, 588, 1084
PspPI	GGNCC	2 cut(s)	427, 536
PspPPI	RGGWCCY	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	1348
PstNI	CAGNNNCTG	2 cut(s)	421, 1262
PsuI	RGATCY	2 cut(s)	106, 349
PvuII	CAGCTG	1 cut(s)	1399
RseI	CAYNNNNRTG	2 cut(s)	702, 1017
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	5 cut(s)	96, 542, 686, 722, 1277
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	8 cut(s)	106, 349, 514, 597, 739, 841, 925, 1232
Sau96I	GGNCC	2 cut(s)	427, 536
SchI	GAGTC	1 cut(s)	638
SduI	GDGCHC	2 cut(s)	186, 550
SfaNI	GCATC	3 cut(s)	401, 1021, 1259
SfcI	CTRYAG	1 cut(s)	1344
SinI	GGWCC	2 cut(s)	427, 536
SmiMI	CAYNNNNRTG	2 cut(s)	702, 1017
SmlI	CTYRAG	1 cut(s)	1439
SmoI	CTYRAG	1 cut(s)	1439
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	8 cut(s)	153, 365, 440, 1036, 1117, 1240, 1279, 1391
SsiI	CCGC	3 cut(s)	327, 1148, 1254
SspMI	CTAG	5 cut(s)	242, 836, 1103, 1158, 1489
SstI	GAGCTC	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	85, 339
TaaI	ACNGT	4 cut(s)	124, 788, 1174, 1182
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	3 cut(s)	783, 831, 1231
TasI	AATT	8 cut(s)	153, 365, 440, 1036, 1117, 1240, 1279, 1391
TfiI	GAWTC	1 cut(s)	1259
Tru1I	TTAA	5 cut(s)	96, 542, 686, 722, 1277
Tru9I	TTAA	5 cut(s)	96, 542, 686, 722, 1277
TscAI	CASTG	4 cut(s)	600, 793, 1330, 1348
TseFI	GTSAC	4 cut(s)	23, 250, 620, 1010
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	4 cut(s)	23, 250, 620, 1010
TspGWI	ACGGA	2 cut(s)	565, 908
TspRI	CASTG	4 cut(s)	600, 793, 1330, 1348
VneI	GTGCAC	1 cut(s)	546
VpaK11BI	GGWCC	2 cut(s)	427, 536
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	1279
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	5 cut(s)	242, 836, 1103, 1158, 1489
Zsp2I	ATGCAT	2 cut(s)	45, 1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.