RLG00000018520

Protein kinase domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
31271993 .. 31274921
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018520

Sequence Viewer

Length: 1917 bp
ATGAGCTCGGTTGGTATGGCAGAAGATGCTGACGTATATGCTGAACCTCCTGATCCCGATGTTTTTGAAACTGATCCAACATGTCGTTATCTTCGGTATAAAGATGTGCTCGGGAAAGGTGCCTTCAAGACAGTATACAAAGCATTTGATGAAGTGAATGGACTTGAAGTAGCATGGAACCAAGTTAGAATTGATGAAGTGCTACAATCACCGGGTGACCTGGAGCGGCTGTATTCAGAAGTTCATCTTTTGAAATCATTGAAGCACAAAAATATAGTAAAATTCTATAATTCCTGGATCGATGATAAGAACAAGACAGTTAATATAATAACGGAGTTATTCACTTCGGGGAGTCTCAGACAGTACTGTAAGAAACACAAGAAAGTGGACAAGAAAGCTGTAAAGGGATGGGCAAGACAAATATTGATGGGATTGAGCTATCTCCATAGTCACAACCCACCAATTATGCATAGGGACTTGAAGTGTGATAATATATTTATCAATGGTAACCAAGGAGAAGTTAAAATTGGAGATCTTGGGTTGGCAACTGTCATGGAGCAAGCTACTGCCAAAAGTGTAATCGGAACCCCTGAGTTTATGGCTCCTGAGCTCTATGATGAAAACTATAATGAGTTAGCAGATATATACTCCTTTGGGATGTGCATGCTAGAGATGGTGACTAATGAATACCCTTATAGTGAATGTAGAAACTCAGCTCAAATATATAAGAAGGTTTCGTCTGGAATAAAACCCGCTGCCCTTTCCAAGGTAAAAGATCCTGAAATGAAACAATTTATTGAGAAGTGTTTAGTCCCAGCATCCGAAAGGTTGTCAGCAGAAGAGCTTCTGATGGACCCTTTCCTCCAATTGAATGGCTCGGTAAAAAATCGTCCTCTGCCACTTCCAGATATCGTATTGCCAAAAATGGGAGCCTTTGGAGATCGTTGTGTGATGTCGGAAGGACCTTTAAGCTCACGGAACAATGCCTTATCTAAGGATTTTGATGATGGGGAGCCACCAGTGATAAACTTTTTTAGCAACTCTGGTGACGGCGAGTCCCGTTCCTTTTACGTGGAGGTTCAGAGGTCAAAAAGAGGCAACTTTTTCTTCTTAAAAGGCGAGCATAATGACGAAAACTCCATATCGTTAATACTGAGAATAGCTGATCAGAATGGTCGTGCAAGGAACATCCATTTCTTATTCTATCTCGACAGTGATACAGCACTTTCAGTTTCAAGTGAAATGGTTGAGCAACTCGAACTAGAAGATCATAATGTTATCTTCATAGCAGAGCTTATTGATTTGTTATTGATGAACTTGATATCAGAATGGAAGTGTTGTGTCCGTGTTGATCATTTGGTTGCTCAAAACAGAAAGAATGTGAACCATCAGAAAGACTCTCAGTCGCCAAAGCCTCAGGAATGCTCGGGCAGATGTCACCAGAATGTTTGTGAGGATGCCAATTCCTCAAAACCACCGATTTGCCCAACTTCTTCCACTTTTGAAGGCTCCATTCCTCCACCAATACTAGAGAAGCCTCCTAATTATGTGAAGGGTGTTCCGAGTTCTAATGCGGTTTTAGCTAGTTCAACCACCACAGTAGAACGGTATTATGAGATGTCATGTGCTTCTATGACCCCTAATGACGCTACACATCGATCTCATAATTCATATGCATCCGCAGAATCTGGGTCTTTGGACTTAAATTTTCATTTGCCAAATGGCTACAAAAGTGCAAGTTGTCCAATCAGTGTTTCCTCATTCTGCACTGCAGACGACTTTGAGTTTAGAAAGGAGTTGGAAACGATTGAACTGCAATTCCAGCTGGAGCTTCAAGATATATCGAAGAGAAGACATGAAGCTATCAAGGAAACAAGAAAAAGGTTATCCCAGAAAGATATTGAGTTGGTTCGCTAG

Protein Analysis

639

Amino Acids

71.99

Weight (kDa)

5.58

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 32 - 279 3e-37 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 34 - 288 1.5e-54 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 135
AciI CCGC 4 cut(s) 226, 753, 1574, 1680
AclWI GGATC 4 cut(s) 47, 68, 305, 770
AcsI RAATTY 2 cut(s) 281, 1705
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 766, 926
AflIII ACRYGT 1 cut(s) 80
AhdI GACNNNNNGTC 2 cut(s) 1054, 1402
AjnI CCWGG 2 cut(s) 219, 293
AjuI GAANNNNNNNTTGG 4 cut(s) 510, 542, 1738, 1770
AloI GAACNNNNNNTCC 2 cut(s) 1803, 1835
Alw21I GWGCWC 3 cut(s) 8, 111, 612
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 4 cut(s) 47, 68, 305, 770
AlwNI CAGNNNCTG 1 cut(s) 1688
Ama87I CYCGRG 2 cut(s) 110, 1426
ApeKI GCWGC 1 cut(s) 755
ApoI RAATTY 2 cut(s) 281, 1705
Asp700I GAANNNNTTC 1 cut(s) 843
AspS9I GGNCC 2 cut(s) 853, 962
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 5 cut(s) 201, 227, 688, 1058, 1430
AvaI CYCGRG 2 cut(s) 110, 1426
AvaII GGWCC 2 cut(s) 853, 962
AxyI CCTNAGG 1 cut(s) 1416
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 8, 612
BbsI GAAGAC 1 cut(s) 1858
Bbv12I GWGCWC 3 cut(s) 8, 111, 612
BbvI GCAGC 1 cut(s) 742
BccI CCATC 6 cut(s) 402, 421, 667, 844, 1001, 1395
BceAI ACGGC 1 cut(s) 1066
BcgI CGANNNNNNTGC 2 cut(s) 1795, 1829
BciT130I CCWGG 2 cut(s) 221, 295
BclI TGATCA 2 cut(s) 1165, 1351
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 5 cut(s) 668, 1262, 1529, 1584, 1915
BfmI CTRYAG 1 cut(s) 1770
BglII AGATCT 1 cut(s) 532
BisI GCNGC 2 cut(s) 227, 756
BlsI GCNGC 2 cut(s) 228, 757
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 3 cut(s) 213, 221, 295
Bme18I GGWCC 2 cut(s) 853, 962
BmeRI GACNNNNNGTC 2 cut(s) 1054, 1402
BmeT110I CYCGRG 2 cut(s) 110, 1426
BmgT120I GGNCC 2 cut(s) 853, 962
BmiI GGNNCC 8 cut(s) 121, 179, 586, 603, 855, 931, 1014, 1510
BmrFI CCNGG 3 cut(s) 213, 221, 295
BmsI GCATC 4 cut(s) 16, 827, 1447, 1685
BpiI GAAGAC 1 cut(s) 1858
BpmI CTGGAG 2 cut(s) 242, 1847
Bpu10I CCTNAGC 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 213
Bsa29I ATCGAT 2 cut(s) 300, 1657
BsaAI YACGTR 1 cut(s) 1072
BsaJI CCNNGG 2 cut(s) 511, 765
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 1121, 1151
Bsc4I CCNNNNNNNGG 2 cut(s) 766, 926
Bse1I ACTGG 1 cut(s) 1019
Bse21I CCTNAGG 1 cut(s) 1416
BseBI CCWGG 2 cut(s) 221, 295
BseCI ATCGAT 2 cut(s) 300, 1657
BseDI CCNNGG 2 cut(s) 511, 765
BseGI GGATG 6 cut(s) 413, 663, 818, 1188, 1462, 1676
BseLI CCNNNNNNNGG 2 cut(s) 766, 926
BseMII CTCAG 7 cut(s) 370, 582, 597, 726, 1145, 1415, 1430
BseNI ACTGG 1 cut(s) 1019
BseXI GCAGC 1 cut(s) 742
BseYI CCCAGC 1 cut(s) 814
BsgI GTGCAG 1 cut(s) 1750
BshNI GGYRCC 1 cut(s) 119
BshVI ATCGAT 2 cut(s) 300, 1657
BsiHKAI GWGCWC 3 cut(s) 8, 111, 612
BsiHKCI CYCGRG 2 cut(s) 110, 1426
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 3 cut(s) 488, 797, 1042
BslI CCNNNNNNNGG 2 cut(s) 766, 926
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 3 cut(s) 488, 797, 1042
BsmI GAATGC 1 cut(s) 1427
BsoBI CYCGRG 2 cut(s) 110, 1426
Bsp1286I GDGCHC 3 cut(s) 8, 111, 612
BspACI CCGC 4 cut(s) 226, 753, 1574, 1680
BspCNI CTCAG 7 cut(s) 369, 583, 598, 725, 1146, 1414, 1429
BspDI ATCGAT 2 cut(s) 300, 1657
BspLI GGNNCC 8 cut(s) 121, 179, 586, 603, 855, 931, 1014, 1510
BspMAI CTGCAG 1 cut(s) 1774
BspPI GGATC 4 cut(s) 47, 68, 305, 770
BspQI GCTCTTC 1 cut(s) 834
BspT107I GGYRCC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 1019
BssECI CCNNGG 2 cut(s) 511, 765
BssNAI GTATAC 1 cut(s) 136
BssT1I CCWWGG 2 cut(s) 511, 765
Bst1107I GTATAC 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 221, 295
Bst4CI ACNGT 8 cut(s) 133, 319, 363, 368, 550, 1214, 1600, 1608
Bst6I CTCTTC 2 cut(s) 834, 1841
BstAPI GCANNNNNTGC 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 1072
BstC8I GCNNGC 3 cut(s) 561, 665, 1121
BstDEI CTNAG 8 cut(s) 356, 591, 606, 712, 993, 1154, 1401, 1416
BstEII GGTNACC 2 cut(s) 215, 506
BstENI CCTNNNNNAGG 1 cut(s) 764
BstF5I GGATG 6 cut(s) 413, 663, 818, 1188, 1462, 1676
BstMAI GTCTC 1 cut(s) 359
BstMWI GCNNNNNNNGC 3 cut(s) 26, 1580, 1822
BstNI CCWGG 2 cut(s) 221, 295
BstNSI RCATGY 2 cut(s) 84, 667
BstPI GGTNACC 2 cut(s) 215, 506
BstSCI CCNGG 3 cut(s) 211, 219, 293
BstSFI CTRYAG 1 cut(s) 1770
BstV1I GCAGC 1 cut(s) 742
BstV2I GAAGAC 1 cut(s) 1858
BstX2I RGATCY 2 cut(s) 532, 775
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 2 cut(s) 532, 775
BstZ17I GTATAC 1 cut(s) 136
Bsu15I ATCGAT 2 cut(s) 300, 1657
Bsu36I CCTNAGG 1 cut(s) 1416
BsuTUI ATCGAT 2 cut(s) 300, 1657
BtsCI GGATG 6 cut(s) 413, 663, 818, 1188, 1462, 1676
BtsI GCAGTG 1 cut(s) 1767
BtsIMutI CAGTG 4 cut(s) 1026, 1219, 1756, 1767
Cac8I GCNNGC 3 cut(s) 561, 665, 1121
CaiI CAGNNNCTG 1 cut(s) 1688
Cfr13I GGNCC 2 cut(s) 853, 962
ClaI ATCGAT 2 cut(s) 300, 1657
CseI GACGC 1 cut(s) 1655
Csp6I GTAC 1 cut(s) 364
CviAII CATG 6 cut(s) 81, 174, 553, 664, 1623, 1856
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 8 cut(s) 356, 591, 606, 712, 993, 1154, 1401, 1416
DraIII CACNNNGTG 1 cut(s) 215
DriI GACNNNNNGTC 2 cut(s) 1054, 1402
Eam1104I CTCTTC 2 cut(s) 834, 1841
Eam1105I GACNNNNNGTC 2 cut(s) 1054, 1402
EarI CTCTTC 2 cut(s) 834, 1841
Ecl136II GAGCTC 2 cut(s) 6, 610
Eco130I CCWWGG 2 cut(s) 511, 765
Eco24I GRGCYC 2 cut(s) 8, 612
Eco32I GATATC 2 cut(s) 910, 1323
Eco47I GGWCC 2 cut(s) 853, 962
Eco53kI GAGCTC 2 cut(s) 6, 610
Eco81I CCTNAGG 1 cut(s) 1416
Eco88I CYCGRG 2 cut(s) 110, 1426
Eco91I GGTNACC 2 cut(s) 215, 506
EcoICRI GAGCTC 2 cut(s) 6, 610
EcoNI CCTNNNNNAGG 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 962
EcoO65I GGTNACC 2 cut(s) 215, 506
EcoRII CCWGG 2 cut(s) 219, 293
EcoRV GATATC 2 cut(s) 910, 1323
EcoT14I CCWWGG 2 cut(s) 511, 765
EcoT22I ATGCAT 2 cut(s) 471, 1678
EcoT38I GRGCYC 2 cut(s) 8, 612
ErhI CCWWGG 2 cut(s) 511, 765
FaeI CATG 6 cut(s) 84, 177, 556, 667, 1626, 1859
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 3 cut(s) 488, 797, 1042
FatI CATG 6 cut(s) 80, 173, 552, 663, 1622, 1855
FauI CCCGC 1 cut(s) 760
FauNDI CATATG 1 cut(s) 1672
FbaI TGATCA 2 cut(s) 1165, 1351
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 227, 756
FokI GGATG 6 cut(s) 420, 670, 805, 1175, 1469, 1663
FriOI GRGCYC 2 cut(s) 8, 612
Fsp4HI GCNGC 2 cut(s) 227, 756
FspBI CTAG 5 cut(s) 668, 1262, 1529, 1584, 1915
GluI GCNGC 2 cut(s) 227, 756
GsaI CCCAGC 1 cut(s) 818
GsuI CTGGAG 2 cut(s) 242, 1847
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 1655
Hin1II CATG 6 cut(s) 84, 177, 556, 667, 1626, 1859
HinfI GANTC 4 cut(s) 352, 1055, 1397, 1685
HpaII CCGG 1 cut(s) 212
HphI GGTGA 5 cut(s) 201, 227, 688, 1058, 1430
Hpy166II GTNNAC 3 cut(s) 136, 388, 1384
Hpy8I GTNNAC 3 cut(s) 136, 388, 1384
HpyAV CCTTC 5 cut(s) 133, 724, 953, 1499, 1546
HpyCH4III ACNGT 8 cut(s) 133, 319, 363, 368, 550, 1214, 1600, 1608
HpyCH4IV ACGT 2 cut(s) 33, 1071
HpyCH4V TGCA 8 cut(s) 469, 663, 1181, 1676, 1736, 1767, 1772, 1816
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 1580, 1822
HpyF3I CTNAG 8 cut(s) 356, 591, 606, 712, 993, 1154, 1401, 1416
HpySE526I ACGT 2 cut(s) 33, 1071
Hsp92II CATG 6 cut(s) 84, 177, 556, 667, 1626, 1859
Ksp22I TGATCA 2 cut(s) 1165, 1351
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 7 cut(s) 223, 556, 607, 929, 1012, 1514, 1828
Lsp1109I GCAGC 1 cut(s) 742
LweI GCATC 4 cut(s) 16, 827, 1447, 1685
MaeI CTAG 5 cut(s) 668, 1262, 1529, 1584, 1915
MaeII ACGT 2 cut(s) 33, 1071
MaeIII GTNAC 6 cut(s) 215, 449, 506, 676, 1046, 1436
MbiI CCGCTC 1 cut(s) 226
MboII GAAGA 9 cut(s) 35, 83, 851, 1099, 1273, 1277, 1485, 1858, 1863
MfeI CAATTG 1 cut(s) 866
MflI RGATCY 2 cut(s) 532, 775
MhlI GDGCHC 3 cut(s) 8, 111, 612
MlyI GAGTC 3 cut(s) 361, 1064, 1391
MmeI TCCRAC 3 cut(s) 101, 936, 1779
Mph1103I ATGCAT 2 cut(s) 471, 1678
MroXI GAANNNNTTC 1 cut(s) 843
MseI TTAA 6 cut(s) 321, 522, 968, 1112, 1148, 1703
MslI CAYNNNNRTG 1 cut(s) 1443
MspA1I CMGCKG 2 cut(s) 755, 1825
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 3 cut(s) 213, 221, 295
MunI CAATTG 1 cut(s) 866
Mva1269I GAATGC 1 cut(s) 1427
MvaI CCWGG 2 cut(s) 221, 295
MwoI GCNNNNNNNGC 3 cut(s) 26, 1580, 1822
NciI CCSGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 1672
NlaIII CATG 6 cut(s) 84, 177, 556, 667, 1626, 1859
NlaIV GGNNCC 8 cut(s) 121, 179, 586, 603, 855, 931, 1014, 1510
NmuCI GTSAC 5 cut(s) 215, 449, 676, 1046, 1436
NsiI ATGCAT 2 cut(s) 471, 1678
NspI RCATGY 2 cut(s) 84, 667
PaeI GCATGC 1 cut(s) 667
PciI ACATGT 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 834
PctI GAATGC 1 cut(s) 1427
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 1 cut(s) 1685
PfoI TCCNGGA 1 cut(s) 293
PkrI GCNGC 2 cut(s) 228, 757
PleI GAGTC 3 cut(s) 360, 1063, 1391
PpsI GAGTC 3 cut(s) 360, 1063, 1391
Ppu21I YACGTR 1 cut(s) 1072
PpuMI RGGWCCY 1 cut(s) 962
PscI ACATGT 1 cut(s) 80
Psp124BI GAGCTC 2 cut(s) 8, 612
Psp5II RGGWCCY 1 cut(s) 962
Psp6I CCWGG 2 cut(s) 219, 293
PspEI GGTNACC 2 cut(s) 215, 506
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 2 cut(s) 219, 293
PspN4I GGNNCC 8 cut(s) 121, 179, 586, 603, 855, 931, 1014, 1510
PspPI GGNCC 2 cut(s) 853, 962
PspPPI RGGWCCY 1 cut(s) 962
PstI CTGCAG 1 cut(s) 1774
PstNI CAGNNNCTG 1 cut(s) 1688
PsuI RGATCY 2 cut(s) 532, 775
PvuII CAGCTG 1 cut(s) 1825
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 1443
SacI GAGCTC 2 cut(s) 8, 612
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 6 cut(s) 321, 522, 968, 1112, 1148, 1703
SatI GCNGC 2 cut(s) 227, 756
Sau96I GGNCC 2 cut(s) 853, 962
ScaI AGTACT 1 cut(s) 365
SchI GAGTC 3 cut(s) 361, 1064, 1391
ScrFI CCNGG 3 cut(s) 213, 221, 295
SduI GDGCHC 3 cut(s) 8, 111, 612
SfaNI GCATC 4 cut(s) 16, 827, 1447, 1685
SfcI CTRYAG 1 cut(s) 1770
SinI GGWCC 2 cut(s) 853, 962
SmiMI CAYNNNNRTG 1 cut(s) 1443
SphI GCATGC 1 cut(s) 667
SsiI CCGC 4 cut(s) 226, 753, 1574, 1680
SspI AATATT 1 cut(s) 423
SspMI CTAG 5 cut(s) 668, 1262, 1529, 1584, 1915
SstI GAGCTC 2 cut(s) 8, 612
StyD4I CCNGG 3 cut(s) 211, 219, 293
StyI CCWWGG 2 cut(s) 511, 765
TaaI ACNGT 8 cut(s) 133, 319, 363, 368, 550, 1214, 1600, 1608
TaiI ACGT 2 cut(s) 36, 1074
TaqI TCGA 5 cut(s) 300, 1209, 1257, 1657, 1844
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 1685
Tru1I TTAA 6 cut(s) 321, 522, 968, 1112, 1148, 1703
Tru9I TTAA 6 cut(s) 321, 522, 968, 1112, 1148, 1703
TscAI CASTG 4 cut(s) 1026, 1219, 1756, 1774
TseFI GTSAC 5 cut(s) 215, 449, 676, 1046, 1436
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 5 cut(s) 215, 449, 676, 1046, 1436
TspGWI ACGGA 3 cut(s) 347, 991, 1334
TspRI CASTG 4 cut(s) 1026, 1219, 1756, 1774
VpaK11BI GGWCC 2 cut(s) 853, 962
XagI CCTNNNNNAGG 1 cut(s) 764
XapI RAATTY 2 cut(s) 281, 1705
XceI RCATGY 2 cut(s) 84, 667
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 5 cut(s) 668, 1262, 1529, 1584, 1915
ZrmI AGTACT 1 cut(s) 365
Zsp2I ATGCAT 2 cut(s) 471, 1678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.