AT1G49405

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015886
Physical Location & Seq
Reverse (-)
18284270 .. 18285418
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49405.1

Sequence Viewer

Length: 459 bp
ATGGTGGAGGTTCCTGGCTCTGTAGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAGATGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTCACTGCTTTCTGCTACTTGGTGACGATCATGTCTTTAGCTATACCATGGAATCTGACGTTAGCAATGGTAGATATCTATTGTGTTATTCTCCAGCAACCATTTCAAAAGCCACGGATCCTTCTCGCTATCTCTATTGGTGATTGGGTGGTGTCTGTTCTAGCGTTGGCTTCAGCGTCATCGGCAGCTAGTGTTGTTGATATTCTGCGATCAAACGAATCCTCCTGCCCTCCAACAATATGCAACAGATATCAGTTTGCAGCAACATTAGCTTTCTTGACTTGGTTCTTGTCTCTCTCTTCTTCTCTCTTCAATCTCTGGTTACTTCCTTCTCTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

152

Amino Acids

16.64

Weight (kDa)

7.64

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 8 - 136 3.4e-26 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49405
fragaria_vesca FvH4_2g07710
malus_domestica MD10G1084900.v1.1
prunus_persica Prupe.8G107800_v2.0.a1 Prupe.8G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0262031
rosa_laevigata RLG00000014459
rosa_multiflora Rmu_sc0006019.1_g000002
rosa_roxburghii Rroxscaffold_7G00207760
rosa_rugosa Rorug05G0595100
rosa_samantha Rh6AG114500 Rh6BG108700 Rh6CG106000 Rh6DG096400
rosa_wichuraiana Rw6G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AclWI GGATC 2 cut(s) 229, 242
AcuI CTGAAG 1 cut(s) 273
AflII CTTAAG 1 cut(s) 46
AgsI TTSAA 2 cut(s) 224, 430
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 3 cut(s) 158, 305, 389
AluI AGCT 3 cut(s) 158, 305, 389
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 2 cut(s) 229, 242
ApeKI GCWGC 2 cut(s) 302, 377
AsuHPI GGTGA 2 cut(s) 151, 269
BamHI GGATCC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 314, 389
BccI CCATC 2 cut(s) 55, 104
BciT130I CCWGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 2 cut(s) 278, 306
BfmI CTRYAG 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 46
BisI GCNGC 2 cut(s) 303, 378
BlsI GCNGC 2 cut(s) 304, 379
Bme1390I CCNGG 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 12, 236
BmrFI CCNGG 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 164, 230
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 164, 230
BseMI GCAATG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 314, 389
BsmAI GTCTC 1 cut(s) 414
Bsp143I GATC 4 cut(s) 144, 234, 326, 453
Bsp19I CCATGG 1 cut(s) 164
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 12, 236
BspPI GGATC 2 cut(s) 229, 242
BspTI CTTAAG 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 164, 230
BssMI GATC 4 cut(s) 144, 234, 326, 453
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 15
Bst6I CTCTTC 4 cut(s) 87, 92, 421, 431
BstAFI CTTAAG 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 37
BstDSI CCRYGG 2 cut(s) 164, 230
BstKTI GATC 4 cut(s) 147, 237, 329, 456
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 4 cut(s) 144, 234, 326, 453
BstMWI GCNNNNNNNGC 3 cut(s) 24, 299, 386
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 314, 389
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtgI CCRYGG 2 cut(s) 164, 230
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 37
CciI TCATGA 1 cut(s) 90
CseI GACGC 1 cut(s) 282
CviAII CATG 3 cut(s) 91, 148, 165
CviJI RGCY 8 cut(s) 18, 39, 78, 158, 229, 287, 305, 389
CviKI_1 RGCY 8 cut(s) 18, 39, 78, 158, 229, 287, 305, 389
DpnI GATC 4 cut(s) 146, 236, 328, 455
DpnII GATC 4 cut(s) 144, 234, 326, 453
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
Eam1104I CTCTTC 4 cut(s) 87, 92, 421, 431
EarI CTCTTC 4 cut(s) 87, 92, 421, 431
Eco130I CCWWGG 1 cut(s) 164
Eco32I GATATC 2 cut(s) 193, 368
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 13
EcoRV GATATC 2 cut(s) 193, 368
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 3 cut(s) 94, 151, 168
FaiI YATR 5 cut(s) 92, 149, 161, 166, 358
FatI CATG 3 cut(s) 90, 147, 164
Fnu4HI GCNGC 2 cut(s) 303, 378
Fsp4HI GCNGC 2 cut(s) 303, 378
FspBI CTAG 2 cut(s) 278, 306
GluI GCNGC 2 cut(s) 303, 378
GsuI CTGGAG 1 cut(s) 194
HgaI GACGC 1 cut(s) 282
Hin1II CATG 3 cut(s) 94, 151, 168
HinfI GANTC 2 cut(s) 169, 335
HphI GGTGA 2 cut(s) 151, 269
Hpy188I TCNGA 2 cut(s) 174, 453
Hpy188III TCNNGA 2 cut(s) 91, 394
HpyAV CCTTC 2 cut(s) 248, 456
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 35, 360, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 299, 386
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 3 cut(s) 94, 151, 168
Kzo9I GATC 4 cut(s) 144, 234, 326, 453
LpnPI CCDG 4 cut(s) 27, 224, 355, 421
Lsp1109I GCAGC 2 cut(s) 314, 389
MaeI CTAG 2 cut(s) 278, 306
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 139, 438
MalI GATC 4 cut(s) 146, 236, 328, 455
MboI GATC 4 cut(s) 144, 234, 326, 453
MboII GAAGA 5 cut(s) 74, 79, 408, 411, 418
MflI RGATCY 1 cut(s) 234
MluCI AATT 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 2 cut(s) 349, 357
MseI TTAA 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 24, 299, 386
NcoI CCATGG 1 cut(s) 164
NdeII GATC 4 cut(s) 144, 234, 326, 453
NlaIII CATG 3 cut(s) 94, 151, 168
NlaIV GGNNCC 2 cut(s) 12, 236
NmuCI GTSAC 1 cut(s) 139
PagI TCATGA 1 cut(s) 90
PfeI GAWTC 2 cut(s) 169, 335
PkrI GCNGC 2 cut(s) 304, 379
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 12, 236
PsuI RGATCY 1 cut(s) 234
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 303, 378
Sau3AI GATC 4 cut(s) 144, 234, 326, 453
ScrFI CCNGG 1 cut(s) 15
SetI ASST 6 cut(s) 12, 53, 160, 179, 307, 391
SfcI CTRYAG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 1 cut(s) 116
SspMI CTAG 2 cut(s) 278, 306
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 179
TasI AATT 1 cut(s) 116
TfiI GAWTC 2 cut(s) 169, 335
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 2 cut(s) 302, 377
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 127
Vha464I CTTAAG 1 cut(s) 46
XspI CTAG 2 cut(s) 278, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.