Rorug05G0595100

Belongs to the Casparian strip membrane proteins (CASP) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
79338631 .. 79355401
16771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0595100.1

Sequence Viewer

Length: 6483 bp
ATGGAAGGAGATGAGCGTCACGTGCTGCTCGCATGCGTCATTTCAGGAACCCTTTTCTCCGTTCTGGGTTCTGCTTCGTTTTCTATACTCTGGCTTGTGAATTGGAGGCCGTGGAGGATCTACAGTTGGATATTCGCCAGGAAATGGCCAGATATCTTACACGGACCCCAGCTGGATATAGTATGTGGTTTTCTGTCACTCTCTGCATGGATTCTTGTCATTTCTCCAGTTCTTGTACTAATCATATGGGGAAGCTGGTTGGTTGTAATATTGGATCGACATATAATTGGTCTGGCTGTTATTATGGCTGGTACTGCTCTTCTACTGGCTTTCTATTCAATCATGCTTTGGTGGCGAACGCAATGGCAGAGCTCAAGGGCTGTTGCTATTCTTCTTCTTCTTGCTGTTGCCCTTCTCTGTGCCTATGAACTCTGTGCTGTATATGTTACAGCTGGTTCAAAAGCATCTCAGCGGTATTCGCCTTCTGGTTTCTTTTTTGGTGTATCAGCAATTGCCTTGGCAATCAACATGCTCTTTATCTGTAGAATGGTGTTTAATGGAAATGGCTTAGATGTCGATGAGTATGTGAGGAAGGCATACAAATTTGCTTATTCTGATTGTATAGAAGTAGGTCCTGTGGCCTGTTTACCAGAACCACCAGATCCGAATGAGTTATATCCTCGACAATCTAGCAGGGCTTCACATCTTGGGCTTCTTTACCTTGGCTCACTTGTAGTTCTTCTCGTGTACTCAATCCTATATGGACTTACTGCAAAGGACGCACGTTGGCTTGGAGCCATTACATCAGCTGCTGTGATAATTCTTGATTGGAACATGGGAGCATGTTTATATGGATTCGAACTCCTTAATAGTCGTGTAGCAGCATTATTTGTTGCCGGCACATCTCGAATTTTTCTCATTTGCTTCGGCGTTCACTACTGGTATTTGGGGCACTGCATTAGTTATGCAGTTGTAGCATCTGTTTTATTAGGTGCTTCTGTTTCTCGTCATTTATCTGTAACAAACCCATTGGCTGCAAGGAGAGATGCCTTACAGAGTACTGTTATTCGCCTCAGAGAGGGTTTCCGCAAAAAAGAACAGAACAGTTCATCAAGCTCGTCTGAAGGTTGTGGCTCAAGCATGAAACGCAGTAGTAGTGTTGAAGCAGGTTGCCTCGGTAATGTTGTTGAAGCAAGTAACAGGAGCGCAACACAGAGCACGGTTGATGCTAATAACTGGAGTAATGTTCTATTACGAACTGCGAGTTCTCACGAGGGGATTAATAGTGATAAAAGCATAGATAGTGGGAGGCCAAGTATAGCATTGTGTAGCAGTTCCTGTCGTTCAGTAATCCAAGAGCCTGAAGTGGGAACTTCCTTTACTGACAAAAATTGCGATCAAAATAGCGCATTGGTGGTTTGTTCTAGCAGTGGTCTTGAAAGCCAAGGCTGTGAATCCAGTGCATCAAATTCTGCAAGTCAACAAACTTTAGATTTGAATTTAGCTTTTGCATTGCAAGAAAGGTTGAATGACCCCAGGATAACATCTATGCTAAAGAAGAGGGGAAGACAAGGTGACCTTGAACTAGTTAATCTTTTGCAGGATAAAGGACTGGATCCTAACTTTGTTATGATGTTGAAGGAGAAGAGCTTGGATCCAACCATTCTGGCATTACTTCAAAGAAGTAGTTTGGATGCTGATAGGGATCATCGTGACAATACAGATATCACCATAGCTGACTCAAACAGTGTGGATAATGGTTTACCCAATCAAATCTCTTTATCAGAAGAACTGAGGCTTCATGGGCTTGAAAAATGGCTCCAATTATCTAGGATTGTTTTGCACCATGTAGTAGGTACCCCAGAGAGAGCATGGGTTCTCTTTAGTTTTGTTTTCATCCTCGAAACAATTGCTGTGGCAATTGTCCGTCCAAAGATAATCAAAATAATAAATGCGACACATCAACAGTTTGAATTTGGGTTTGCGGTGCTGCTGTTATCTCCTGTGGTCTGTTCAATCATGGCTTTTCTTCGATCTCTTCAAGCAGAAGAAATGGCCATGACCTCTAAGCCACGCAAGTATGGTTTTGTTGCTTGGCTGCTGAGCACCTGCGTTGGATTATTGCTTTCCTTCTTGAGCAAATCATCAGTTCTTCTGGGATTGTCTTTGACTGTTCCCCTCATGGTGGCATGCCTTTCTGTTGCCATTCCTACATGGATCCGTAATGGCTACCAATTTTGGGTTCCTCAATTACATTGTGCAGGTCCTGCAGGGAACCATCAAATTCGGGGAACAAAAGAGGGTGTTATTCTTGTCTTCTGCACAACATTATTTACTGGATCTGTATTAGCTCTCGGTGCAATAGTGTCTGCAAAGCCCTTGGATGACTTAAATTACAAAGGATGGACGGGTGAACAGAAAAGCTTTACATCTCCTTATGCATCATCTGTGTACATTGGCTGGGCTATGGCTTCTGCCATTGCTTTACTGGTTACTGGTGTACTGCCAATTGTTTCATGGTTTGCATCTTACCGGTTCTCCATGTTTTCTGCTGTGTGTGTCGGGATATTTACAGCTGTCCTCGTGTCATTTTGTGGTGCATCCTATATTGAGGTTGTGAAATCTAGAGATGACCAAGTTCCAACAAAGGGTGATTTCCTTGCTGCTTTACTTCCTTTAATTTGCATTCCAGCATTTCTGTCTCTGTGCTCGGGGTTGTATAAATGGAAGGATGATAATTGGAAGCTTTCTCGGGGTGTTTATATCTTTGTAACCATCGGTCTTCTACTTCTGCTCGGAGCAATAGCAGCTGTTATAGTCGTAGTTACACCATGGACGATTGGGGTATCATTTCTTTTAGTTCTTCTCATGATTGTACTGGCTATTGGTGCTATACATCATTGGGCCTCAAACAACTTTTATTTGACAAGGACCCAGACATTCTTTGTTTGTTTCCTCGCTTTTCTTTTGGCACTGGCTGCACTTCTTGTTGGATGGTTTGAAGATAAACCATTTGTCGGTGCTTCTGTCGGCTACTTTTTGTTTTTGTTTCTTCTTGCCGGGAGGGCATTGACTGTTCTTCTTTCACCTCCTATAGTTGTTTATTCGCCAAGAGTTCTCCCTGTTTATGTTTATGATGCTCATGCAGACTGTGCAAAGAATGTCAGTGCTGCATTTCTTGTGCTTTATGGGATTGCATTGGCAACTGAGGGCTGGGGTGTTGTTGCGAGTTTGAAAATTTATCCACCATTTGCTGGTGCCGCTGTATCAGCAATTACTCTTGTTGCTGCCTTTGGGTTTGCTTTCTCTCGTCCCTGCTTGACTCTCAAGATGATGGAAGATGCAGTACACTTTCTTAGTAAAGAAACCGTTGTTCAAGCTATTGCTAGATCTGCCACCAAGACCAGAAATGCTTTATCTGGAACTTATTCGGCTCCACAAAGGTCTGCCAGTTCAGCTGCTCTTTTGGTTGGAGATCCCACGATAATGCGTGATAGGGCAGGAAATTTTGTGCTTCCCAGAGCAGATGTCATGAAATTGAGAGATCGCTTAAGAAATGAGGAGTTAGTTGCAGGATCATTCTTCGGAAGAATGAGATATGGAAGGACTTTCCGCCATGAGCCAACAAGTAGTATTGATCACCGAAGAGAGATGTGTGCTCATGCACGAATATTGGCTTTGGAAGAGGCGATTGATACTGAATGGGTATATATGTGGGATAAATTTGGTGGTTATCTGCTTCTTTTGCTTGGTTTGACTGCTAAGGCAGAACGAGTACAGGATGAGGTACGCTTGAGACTCTTTCTTGATAGCATAGGATTTGCAGACTTAAGTGCCAAGAAAATAAAAAAATGGATGCCAGAGGATCGTAGGCAGTTTGAGATTATTCAGGAGAGTTACATAAGAGAAAAGGAGATGGAAGAGGAACTCTTAATGCAAAGACGTGAAGAGGAGGGGAAAGGCAAAGAGAGAAGAAAGGCTCTCTTGGAGAAGGAAGAACGCAAATGGAAGGAGATAGAAGCGTCTTTAATTTCCTCCATTCCTAATGCTGGCAGCAGGGAAGCTGCAGCTGTGGCAGCTGCAGTGCGTGCAGTAGGGGGTGATTCTGTTCTTGATGATTCTTTTGCTCGAGAGAGAGTCTCAAGCATTGCGCGTCGCATACGCACAGCTCAGTTAACTCGGCGAGCACTGCAGACAGGAATTTCCGGTGCTGTATGCGTTCTAGATGATGAACCGACAACAAGTGGCAGGCACTGTGGCCAGATTGATTCTAGCATCTGTCAAAGTCAGAAGATCAGCTTTTCCATTGCAGTGATGATCCAACCTGTGTCTGGGCCTGTTTGCCTGTTAGGCACTGAGTTTCAAAAGAAAGTTTGTTGGGAAATATTGGTCGCCGGTTCTGAGCAAGGAATTGAAGCTGGACAAGTTGGGCTTAGATTGATCACTAAAGGCGACAGACAAACTACTGTTGCAAAGGAGTGGAGTATTAGTGCAACTAGTATTGCAGATGGAAGGTGGCATTTGGTAACCATGACAATTGATGCTGATTTAGGTGAGGCAACTTGCTATCTTGATGGTGGTTTTGATGGCTACCAGACTGGTTTACCATTGCACGTGGGTAATACTATTTGGGAGCAAGGAACAGAAGTTTGGGTAGGTGTTAGACCGCCTACAGATATGGATGCATTTGGGAGGTCAGACAGTGAAGGGGCTGAGTCCAAGATGCATATTATGGATGTGTTTCTATGGGGAAGGTGCTTAACTGAGGATGATATTGCTGCTCTCCATACAGCTGTTGGGTCAGCTGATACTAGTATGATAGATTTTCCTGAAGATGCTTGGCAGTGGGCAGATTCACCTTCTAGACTTGACGAATGGGATAGTGATCCTGCCGATGTAGATCTCTATGATAGGGATGAAGTTGATTGGGATGGGCAATATTCTAGTGGAAGGAAAAGAAGATCGGAGCGTGATGGAGTTCTGGTTGATTTGGATTCCTTTGCCAGGAGGTTTAGGAAACCTAGGATGGAAACGCAAGAAGAAATTAATCAACGAATGCTTTCTGTTGAATTGGCTGTCAAAGAAGCTCTCTGTGCAAGAGGAGAAACAAATTTTACTGATCAGGAGTTTCCTCCAAATGATCAATCACTATTTGTAGATTCGGAAAATCCCCCTTCAAAGTTGCAGGTCGTTTCAGAATGGATGAGGCCTGCTGATATTGTAAAAGAGAGCAGGCTTGCTACTCGGCCGTGCTTATTTTCTGGCACTGTGAATCCTTCTGATGTTTGTCAGGGTCGGCTGGGTGATTGTTGGTTTTTGAGTGCTGTTGCTGTTCTGACGGAAGTTTCTCGAATATCAGAAGTTATTATTACTCCAGAGTATAATGAGGAAGGAATCTACACTGTCCGCTTCTGTATTCAGGGTGAGTGGGTTCCTGTTGTTGTTGATGATTGGATTCCATGTGAATCACCGGGTAAACCAGCATTTGCTACTAGTAGAAAAGGTAACGAGTTGTGGGTCTCTTTACTGGAGAAGGCATATGCCAAATTGCATGGCTCCTATGAAGCATTAGAAGGTGGACTTGTCCAAGATGCTCTTGTAGACCTCACTGGAGGTGCAGGTGAAGAAATTGATATGAGGAGTGCTCAGGCCCAAATTGATCTTGCGAGTGGTCGATTATGGTCTCAATTGTTGCGCTTCAAACAAGAGGGATTTCTTCTGGGTGCTGGAAGTCCATCTGGTTCAGATGTACATATTTCCTCCAGTGGCATTGTGCAAGGTCATGCTTACTCGTTATTGCAGGTGAGAGAGGTGGATGGTCACAAGCTTATTCAGATTCGCAATCCATGGGCCAATGAAGTTGAGTGGAATGGCCCCTGGTCTGACTCATCGCCTGAATGGACTGATAGGATGAAGCATAAGCTGAAGCATATTCCACAGTCAAAAGATGGCATATTCTGGATGTCCTGGCAAGACTTCCAAATTCATTTTCGATCAATATATGTTTGCCGTATCTATCCCCCAGAGATGCGCTACTCTGTTCATGGCCAATGGCGAAGTTATAGTGCTGGTGGCTGCCAAGACTATGAGACATGGCATCAAAATCCACAATTCCGATTGAGGGCCACAGGGCCAGATGCCTCATTTCCAATTCATGTATTCATTACGTTGACACAGGGTGTGAGCTTCTCAAGAACAGTTGCTGGTTTCAGAAACTATCAATCCAGTCATGATTCAATGATGTTCTATATTGGGATGAGGATACTCAAAACTCGAGGCCGCCGAGCTGCTTACAATATATACCTACATGAATCAGTCGGCGGGACAGATTATGTTAATTCACGAGAAATATCTTGTGAAATGGTTTTGGATCCAGATCCAAAAGGTTACACAATAGTGCCGACGACTATACACCCTGGCGAAGAAGCTCCATTTGTTCTTTCTGTTTTCACAAAAGCATCAATAACCTTGGAAGCCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2160

Amino Acids

239.0

Weight (kDa)

6.05

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C2 PF00648 1705 - 2004 4.6e-89 Calpain family cysteine protease
Calpain_III PF01067 2015 - 2150 1.1e-15 Calpain large subunit, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49405
fragaria_vesca FvH4_2g07710
malus_domestica MD10G1084900.v1.1
prunus_persica Prupe.8G107800_v2.0.a1 Prupe.8G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0262031
rosa_laevigata RLG00000014459
rosa_multiflora Rmu_sc0006019.1_g000002
rosa_roxburghii Rroxscaffold_7G00207760
rosa_rugosa Rorug05G0595100
rosa_samantha Rh6AG114500 Rh6BG108700 Rh6CG106000 Rh6DG096400
rosa_wichuraiana Rw6G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 2117, 5609, 5791
Acc36I ACCTGC 6 cut(s) 1157, 2117, 2252, 5176, 5609, 5791
Acc65I GGTACC 1 cut(s) 1856
AccB1I GGYRCC 2 cut(s) 1856, 3257
AccB7I CCANNNNNTGG 2 cut(s) 144, 3254
AccI GTMKAC 1 cut(s) 5601
AccII CGCG 1 cut(s) 4153
AciI CCGC 9 cut(s) 472, 1087, 1985, 3261, 3613, 4667, 5407, 6280, 6321
AcoI YGGCCR 5 cut(s) 146, 2055, 4258, 5246, 6046
AcuI CTGAAG 4 cut(s) 1143, 1383, 4851, 5945
AcvI CACGTG 2 cut(s) 22, 4615
AdeI CACNNNGTG 1 cut(s) 6179
AflII CTTAAG 2 cut(s) 3550, 3829
AgeI ACCGGT 1 cut(s) 2532
AhlI ACTAGT 4 cut(s) 1585, 4496, 4811, 5492
AjiI CACGTC 1 cut(s) 3944
AjnI CCWGG 6 cut(s) 137, 1535, 5003, 5876, 5966, 6415
AjuI GAANNNNNNNTTGG 6 cut(s) 2226, 2258, 4633, 4665, 5973, 6005
AleI CACNNNNGTG 1 cut(s) 6395
Alw21I GWGCWC 7 cut(s) 374, 1220, 2108, 2711, 3661, 4189, 5647
Alw26I GTCTC 6 cut(s) 2706, 3790, 4144, 5524, 5688, 6083
AlwNI CAGNNNCTG 5 cut(s) 812, 1338, 2267, 4254, 6203
Ama87I CYCGRG 4 cut(s) 2710, 2751, 4128, 6273
AseI ATTAAT 2 cut(s) 1281, 5046
AsiGI ACCGGT 1 cut(s) 2532
Asp700I GAANNNNTTC 2 cut(s) 3427, 5059
Asp718I GGTACC 1 cut(s) 1856
AspA2I CCTAGG 1 cut(s) 5021
AspLEI GCGC 5 cut(s) 1208, 1409, 4153, 5697, 6033
AsuC2I CCSGG 2 cut(s) 3061, 5472
AsuII TTCGAA 1 cut(s) 858
AvaI CYCGRG 4 cut(s) 2710, 2751, 4128, 6273
AvaII GGWCC 4 cut(s) 164, 632, 2264, 2931
AvrII CCTAGG 1 cut(s) 5021
BaeGI GKGCMC 1 cut(s) 954
BalI TGGCCA 4 cut(s) 148, 2057, 4260, 6048
BamHI GGATCC 4 cut(s) 1615, 1654, 2217, 6370
BanI GGYRCC 2 cut(s) 1856, 3257
BanII GRGCYC 1 cut(s) 374
BarI GAAGNNNNNNTAC 2 cut(s) 3330, 3362
BauI CACGAG 4 cut(s) 743, 1271, 2582, 6342
BbrPI CACGTG 2 cut(s) 22, 4615
BbsI GAAGAC 3 cut(s) 1573, 2308, 2774
Bbv12I GWGCWC 7 cut(s) 374, 1220, 2108, 2711, 3661, 4189, 5647
BceAI ACGGC 3 cut(s) 94, 5233, 5994
BcgI CGANNNNNNTGC 2 cut(s) 1892, 1926
BciT130I CCWGG 6 cut(s) 139, 1537, 5005, 5878, 5968, 6417
BciVI GTATCC 1 cut(s) 6255
BclI TGATCA 4 cut(s) 3637, 4440, 5119, 5140
BcnI CCSGG 2 cut(s) 3061, 5472
BcoDI GTCTC 6 cut(s) 2706, 3790, 4144, 5524, 5688, 6083
BcuI ACTAGT 4 cut(s) 1585, 4496, 4811, 5492
BfmI CTRYAG 8 cut(s) 121, 541, 2268, 3093, 4065, 4080, 4190, 4671
BfrI CTTAAG 2 cut(s) 3550, 3829
BfuAI ACCTGC 6 cut(s) 1157, 2117, 2252, 5176, 5609, 5791
BfuI GTATCC 1 cut(s) 6255
BglI GCCNNNNNGGC 2 cut(s) 3065, 4350
BglII AGATCT 2 cut(s) 3389, 4900
BlnI CCTAGG 1 cut(s) 5021
BlpI GCTNAGC 1 cut(s) 2102
BmcAI AGTACT 1 cut(s) 1060
Bme1390I CCNGG 8 cut(s) 139, 1537, 3061, 5005, 5472, 5878, 5968, 6417
Bme18I GGWCC 4 cut(s) 164, 632, 2264, 2931
BmeT110I CYCGRG 4 cut(s) 2710, 2751, 4128, 6273
BmgBI CACGTC 1 cut(s) 3944
BmrFI CCNGG 8 cut(s) 139, 1537, 3061, 5005, 5472, 5878, 5968, 6417
BpiI GAAGAC 3 cut(s) 1573, 2308, 2774
BplI GAGNNNNNCTC 4 cut(s) 4124, 4156, 5629, 5661
BpmI CTGGAG 6 cut(s) 210, 1258, 5358, 5549, 5631, 5746
Bpu10I CCTNAGC 2 cut(s) 3762, 5646
Bpu1102I GCTNAGC 1 cut(s) 2102
Bpu14I TTCGAA 1 cut(s) 858
BpuEI CTTGAG 7 cut(s) 358, 1120, 2155, 3311, 3814, 4126, 6175
BpuMI CCSGG 2 cut(s) 3061, 5472
BsaAI YACGTR 2 cut(s) 22, 4615
BsaBI GATNNNNATC 4 cut(s) 1704, 4884, 4899, 6375
BsaI GGTCTC 2 cut(s) 5524, 5688
BsaWI WCCGGW 2 cut(s) 2532, 4205
BsaXI ACNNNNNCTCC 8 cut(s) 1300, 1330, 2522, 2552, 4474, 4504, 4968, 4998
Bse118I RCCGGY 3 cut(s) 896, 2532, 4394
Bse3DI GCAATG 6 cut(s) 368, 1511, 2478, 4146, 4305, 4607
Bse8I GATNNNNATC 4 cut(s) 1704, 4884, 4899, 6375
BseBI CCWGG 6 cut(s) 139, 1537, 5005, 5878, 5968, 6417
BseJI GATNNNNATC 4 cut(s) 1704, 4884, 4899, 6375
BseMI GCAATG 6 cut(s) 368, 1511, 2478, 4146, 4305, 4607
BseRI GAGGAG 4 cut(s) 3575, 3965, 5115, 5653
BseSI GKGCMC 1 cut(s) 954
BseX3I CGGCCG 1 cut(s) 5246
BseYI CCCAGC 4 cut(s) 168, 2460, 3213, 5299
BsgI GTGCAG 5 cut(s) 2280, 2305, 2964, 4110, 5637
Bsh1236I CGCG 1 cut(s) 4153
Bsh1285I CGRYCG 1 cut(s) 5249
BshNI GGYRCC 2 cut(s) 1856, 3257
BshTI ACCGGT 1 cut(s) 2532
BsiEI CGRYCG 1 cut(s) 5249
BsiHKAI GWGCWC 7 cut(s) 374, 1220, 2108, 2711, 3661, 4189, 5647
BsiHKCI CYCGRG 4 cut(s) 2710, 2751, 4128, 6273
BsiSI CCGG 6 cut(s) 897, 2533, 3060, 4206, 4395, 5471
BslFI GGGAC 2 cut(s) 3297, 6337
BsmAI GTCTC 6 cut(s) 2706, 3790, 4144, 5524, 5688, 6083
BsmFI GGGAC 2 cut(s) 3297, 6337
BsmI GAATGC 2 cut(s) 2685, 5061
Bso31I GGTCTC 2 cut(s) 5524, 5688
BsoBI CYCGRG 4 cut(s) 2710, 2751, 4128, 6273
Bsp119I TTCGAA 1 cut(s) 858
Bsp1286I GDGCHC 8 cut(s) 374, 954, 1220, 2108, 2711, 3661, 4189, 5647
Bsp1407I TGTACA 2 cut(s) 2451, 5749
Bsp1720I GCTNAGC 1 cut(s) 2102
Bsp19I CCATGG 2 cut(s) 2831, 5846
BspACI CCGC 9 cut(s) 472, 1087, 1985, 3261, 3613, 4667, 5407, 6280, 6321
BspFNI CGCG 1 cut(s) 4153
BspHI TCATGA 3 cut(s) 2868, 3531, 6229
BspMAI CTGCAG 4 cut(s) 2272, 4069, 4084, 4194
BspMI ACCTGC 6 cut(s) 1157, 2117, 2252, 5176, 5609, 5791
BspQI GCTCTTC 2 cut(s) 324, 1640
BspT104I TTCGAA 1 cut(s) 858
BspT107I GGYRCC 2 cut(s) 1856, 3257
BspTI CTTAAG 2 cut(s) 3550, 3829
BspTNI GGTCTC 2 cut(s) 5524, 5688
BsrDI GCAATG 6 cut(s) 368, 1511, 2478, 4146, 4305, 4607
BsrFI RCCGGY 3 cut(s) 896, 2532, 4394
BsrGI TGTACA 2 cut(s) 2451, 5749
BssAI RCCGGY 3 cut(s) 896, 2532, 4394
BssSI CACGAG 4 cut(s) 743, 1271, 2582, 6342
BssT1I CCWWGG 8 cut(s) 516, 721, 1444, 2379, 2831, 5021, 5846, 6468
Bst2BI CACGAG 4 cut(s) 743, 1271, 2582, 6342
Bst2UI CCWGG 6 cut(s) 139, 1537, 5005, 5878, 5968, 6417
Bst6I CTCTTC 8 cut(s) 324, 1553, 1640, 2043, 3640, 3678, 3915, 3942
BstAFI CTTAAG 2 cut(s) 3550, 3829
BstAPI GCANNNNNTGC 4 cut(s) 2267, 2978, 3152, 4088
BstAUI TGTACA 2 cut(s) 2451, 5749
BstBAI YACGTR 2 cut(s) 22, 4615
BstBI TTCGAA 1 cut(s) 858
BstDSI CCRYGG 3 cut(s) 110, 2831, 5846
BstEII GGTNACC 2 cut(s) 1574, 4525
BstENI CCTNNNNNAGG 2 cut(s) 1076, 5002
BstFNI CGCG 1 cut(s) 4153
BstHHI GCGC 5 cut(s) 1208, 1409, 4153, 5697, 6033
BstMAI GTCTC 6 cut(s) 2706, 3790, 4144, 5524, 5688, 6083
BstMCI CGRYCG 1 cut(s) 5249
BstNI CCWGG 6 cut(s) 139, 1537, 5005, 5878, 5968, 6417
BstNSI RCATGY 4 cut(s) 36, 532, 846, 2193
BstPI GGTNACC 2 cut(s) 1574, 4525
BstSCI CCNGG 8 cut(s) 137, 1535, 3059, 5003, 5470, 5876, 5966, 6415
BstSFI CTRYAG 8 cut(s) 121, 541, 2268, 3093, 4065, 4080, 4190, 4671
BstSLI GKGCMC 1 cut(s) 954
BstUI CGCG 1 cut(s) 4153
BstV2I GAAGAC 3 cut(s) 1573, 2308, 2774
BstZI CGGCCG 1 cut(s) 5246
BsuI GTATCC 1 cut(s) 6255
BtgI CCRYGG 3 cut(s) 110, 2831, 5846
BtgZI GCGATG 1 cut(s) 5874
BtrI CACGTC 1 cut(s) 3944
BtsI GCAGTG 6 cut(s) 952, 1435, 4089, 4187, 4317, 4850
BveI ACCTGC 6 cut(s) 1157, 2117, 2252, 5176, 5609, 5791
CaiI CAGNNNCTG 5 cut(s) 812, 1338, 2267, 4254, 6203
CciI TCATGA 3 cut(s) 2868, 3531, 6229
CfoI GCGC 5 cut(s) 1208, 1409, 4153, 5697, 6033
Cfr10I RCCGGY 3 cut(s) 896, 2532, 4394
CseI GACGC 5 cut(s) 5, 25, 788, 4011, 4142
CspAI ACCGGT 1 cut(s) 2532
CspCI CAANNNNNGTGG 4 cut(s) 1731, 1766, 1896, 1931
DraIII CACNNNGTG 1 cut(s) 6179
EaeI YGGCCR 5 cut(s) 146, 2055, 4258, 5246, 6046
EagI CGGCCG 1 cut(s) 5246
Eam1104I CTCTTC 8 cut(s) 324, 1553, 1640, 2043, 3640, 3678, 3915, 3942
EarI CTCTTC 8 cut(s) 324, 1553, 1640, 2043, 3640, 3678, 3915, 3942
EciI GGCGGA 1 cut(s) 3602
Ecl136II GAGCTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 5246
Eco130I CCWWGG 8 cut(s) 516, 721, 1444, 2379, 2831, 5021, 5846, 6468
Eco147I AGGCCT 1 cut(s) 5209
Eco24I GRGCYC 1 cut(s) 374
Eco31I GGTCTC 2 cut(s) 5524, 5688
Eco32I GATATC 2 cut(s) 154, 1726
Eco47I GGWCC 4 cut(s) 164, 632, 2264, 2931
Eco52I CGGCCG 1 cut(s) 5246
Eco53kI GAGCTC 1 cut(s) 372
Eco57I CTGAAG 4 cut(s) 1143, 1383, 4851, 5945
Eco72I CACGTG 2 cut(s) 22, 4615
Eco88I CYCGRG 4 cut(s) 2710, 2751, 4128, 6273
Eco91I GGTNACC 2 cut(s) 1574, 4525
EcoICRI GAGCTC 1 cut(s) 372
EcoNI CCTNNNNNAGG 2 cut(s) 1076, 5002
EcoO109I RGGNCCY 3 cut(s) 632, 2264, 2931
EcoO65I GGTNACC 2 cut(s) 1574, 4525
EcoRII CCWGG 6 cut(s) 137, 1535, 5003, 5876, 5966, 6415
EcoRV GATATC 2 cut(s) 154, 1726
EcoT14I CCWWGG 8 cut(s) 516, 721, 1444, 2379, 2831, 5021, 5846, 6468
EcoT22I ATGCAT 3 cut(s) 2443, 4687, 4728
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 8 cut(s) 516, 721, 1444, 2379, 2831, 5021, 5846, 6468
FaqI GGGAC 2 cut(s) 3297, 6337
FauI CCCGC 1 cut(s) 6314
FauNDI CATATG 2 cut(s) 245, 5539
FbaI TGATCA 4 cut(s) 3637, 4440, 5119, 5140
FblI GTMKAC 1 cut(s) 5601
FriOI GRGCYC 1 cut(s) 374
GlaI GCGC 5 cut(s) 1207, 1408, 4152, 5696, 6032
GsaI CCCAGC 4 cut(s) 172, 2464, 3217, 5303
GsuI CTGGAG 6 cut(s) 210, 1258, 5358, 5549, 5631, 5746
HapII CCGG 6 cut(s) 897, 2533, 3060, 4206, 4395, 5471
HgaI GACGC 5 cut(s) 5, 25, 788, 4011, 4142
HhaI GCGC 5 cut(s) 1208, 1409, 4153, 5697, 6033
Hin6I GCGC 5 cut(s) 1206, 1407, 4151, 5695, 6031
HinP1I GCGC 5 cut(s) 1206, 1407, 4151, 5695, 6031
HincII GTYRAC 3 cut(s) 1481, 4176, 6171
HindII GTYRAC 3 cut(s) 1481, 4176, 6171
HindIII AAGCTT 3 cut(s) 2422, 2744, 5825
HpaI GTTAAC 1 cut(s) 4176
HpaII CCGG 6 cut(s) 897, 2533, 3060, 4206, 4395, 5471
Hpy99I CGWCG 2 cut(s) 4158, 6406
HpyCH4IV ACGT 5 cut(s) 21, 784, 3943, 4614, 6167
HpySE526I ACGT 5 cut(s) 21, 784, 3943, 4614, 6167
HspAI GCGC 5 cut(s) 1206, 1407, 4151, 5695, 6031
KpnI GGTACC 1 cut(s) 1860
KroI GCCGGC 1 cut(s) 896
KroNI GCCGGC 1 cut(s) 898
Ksp22I TGATCA 4 cut(s) 3637, 4440, 5119, 5140
KspAI GTTAAC 1 cut(s) 4176
LguI GCTCTTC 2 cut(s) 324, 1640
MaeII ACGT 5 cut(s) 21, 784, 3943, 4614, 6167
MfeI CAATTG 6 cut(s) 510, 1908, 1920, 2508, 4536, 5687
MhlI GDGCHC 8 cut(s) 374, 954, 1220, 2108, 2711, 3661, 4189, 5647
MlsI TGGCCA 4 cut(s) 148, 2057, 4260, 6048
MluNI TGGCCA 4 cut(s) 148, 2057, 4260, 6048
MlyI GAGTC 6 cut(s) 1733, 3316, 3792, 4146, 4724, 5879
MmeI TCCRAC 7 cut(s) 107, 1682, 2095, 2666, 2971, 3451, 4345
Mox20I TGGCCA 4 cut(s) 148, 2057, 4260, 6048
Mph1103I ATGCAT 3 cut(s) 2443, 4687, 4728
MroNI GCCGGC 1 cut(s) 896
MroXI GAANNNNTTC 2 cut(s) 3427, 5059
MscI TGGCCA 4 cut(s) 148, 2057, 4260, 6048
MslI CAYNNNNRTG 3 cut(s) 3485, 4310, 6395
Msp20I TGGCCA 4 cut(s) 148, 2057, 4260, 6048
MspCI CTTAAG 2 cut(s) 3550, 3829
MspI CCGG 6 cut(s) 897, 2533, 3060, 4206, 4395, 5471
MspR9I CCNGG 8 cut(s) 139, 1537, 3061, 5005, 5472, 5878, 5968, 6417
MunI CAATTG 6 cut(s) 510, 1908, 1920, 2508, 4536, 5687
Mva1269I GAATGC 2 cut(s) 2685, 5061
MvaI CCWGG 6 cut(s) 139, 1537, 5005, 5878, 5968, 6417
MvnI CGCG 1 cut(s) 4153
NaeI GCCGGC 1 cut(s) 898
NciI CCSGG 2 cut(s) 3061, 5472
NcoI CCATGG 2 cut(s) 2831, 5846
NdeI CATATG 2 cut(s) 245, 5539
NgoMIV GCCGGC 1 cut(s) 896
NmeAIII GCCGAG 3 cut(s) 4159, 5224, 6308
NmuCI GTSAC 5 cut(s) 17, 195, 1574, 1712, 5819
NsiI ATGCAT 3 cut(s) 2443, 4687, 4728
NspI RCATGY 4 cut(s) 36, 532, 846, 2193
NspV TTCGAA 1 cut(s) 858
OliI CACNNNNGTG 1 cut(s) 6395
PaeI GCATGC 2 cut(s) 36, 2193
PaeR7I CTCGAG 2 cut(s) 4128, 6273
PagI TCATGA 3 cut(s) 2868, 3531, 6229
PaqCI CACCTGC 3 cut(s) 2117, 5609, 5791
PceI AGGCCT 1 cut(s) 5209
PciSI GCTCTTC 2 cut(s) 324, 1640
PcsI WCGNNNNNNNCGW 1 cut(s) 6280
PctI GAATGC 2 cut(s) 2685, 5061
PdiI GCCGGC 1 cut(s) 898
PdmI GAANNNNTTC 2 cut(s) 3427, 5059
PflMI CCANNNNNTGG 2 cut(s) 144, 3254
PinAI ACCGGT 1 cut(s) 2532
PleI GAGTC 6 cut(s) 1733, 3316, 3792, 4145, 4723, 5879
PmaCI CACGTG 2 cut(s) 22, 4615
PmlI CACGTG 2 cut(s) 22, 4615
PpsI GAGTC 6 cut(s) 1733, 3316, 3792, 4145, 4723, 5879
Ppu21I YACGTR 2 cut(s) 22, 4615
PpuMI RGGWCCY 3 cut(s) 632, 2264, 2931
PshBI ATTAAT 2 cut(s) 1281, 5046
Psp124BI GAGCTC 1 cut(s) 374
Psp5II RGGWCCY 3 cut(s) 632, 2264, 2931
Psp6I CCWGG 6 cut(s) 137, 1535, 5003, 5876, 5966, 6415
PspCI CACGTG 2 cut(s) 22, 4615
PspEI GGTNACC 2 cut(s) 1574, 4525
PspFI CCCAGC 4 cut(s) 168, 2460, 3213, 5299
PspGI CCWGG 6 cut(s) 137, 1535, 5003, 5876, 5966, 6415
PspPPI RGGWCCY 3 cut(s) 632, 2264, 2931
PspXI VCTCGAGB 1 cut(s) 6273
PsrI GAACNNNNNNTAC 2 cut(s) 1363, 1395
PstI CTGCAG 4 cut(s) 2272, 4069, 4084, 4194
PstNI CAGNNNCTG 5 cut(s) 812, 1338, 2267, 4254, 6203
RseI CAYNNNNRTG 3 cut(s) 3485, 4310, 6395
SacI GAGCTC 1 cut(s) 374
SapI GCTCTTC 2 cut(s) 324, 1640
SbfI CCTGCAGG 1 cut(s) 2272
ScaI AGTACT 1 cut(s) 1060
SchI GAGTC 6 cut(s) 1733, 3316, 3792, 4146, 4724, 5879
ScrFI CCNGG 8 cut(s) 139, 1537, 3061, 5005, 5472, 5878, 5968, 6417
SdaI CCTGCAGG 1 cut(s) 2272
SduI GDGCHC 8 cut(s) 374, 954, 1220, 2108, 2711, 3661, 4189, 5647
SfcI CTRYAG 8 cut(s) 121, 541, 2268, 3093, 4065, 4080, 4190, 4671
Sfr274I CTCGAG 2 cut(s) 4128, 6273
SfuI TTCGAA 1 cut(s) 858
SinI GGWCC 4 cut(s) 164, 632, 2264, 2931
SlaI CTCGAG 2 cut(s) 4128, 6273
SmiMI CAYNNNNRTG 3 cut(s) 3485, 4310, 6395
SpeI ACTAGT 4 cut(s) 1585, 4496, 4811, 5492
SphI GCATGC 2 cut(s) 36, 2193
Sse8387I CCTGCAGG 1 cut(s) 2272
SseBI AGGCCT 1 cut(s) 5209
SsiI CCGC 9 cut(s) 472, 1087, 1985, 3261, 3613, 4667, 5407, 6280, 6321
SspI AATATT 4 cut(s) 270, 3672, 4386, 4940
SstI GAGCTC 1 cut(s) 374
StuI AGGCCT 1 cut(s) 5209
StyD4I CCNGG 8 cut(s) 137, 1535, 3059, 5003, 5470, 5876, 5966, 6415
StyI CCWWGG 8 cut(s) 516, 721, 1444, 2379, 2831, 5021, 5846, 6468
TaiI ACGT 5 cut(s) 24, 787, 3946, 4617, 6170
TaqII GACCGA 1 cut(s) 2768
TatI WGTACW 9 cut(s) 235, 747, 1058, 2451, 2500, 2875, 3346, 3775, 5749
TauI GCSGC 2 cut(s) 3263, 6282
TseFI GTSAC 5 cut(s) 17, 195, 1574, 1712, 5819
Tsp45I GTSAC 5 cut(s) 17, 195, 1574, 1712, 5819
TspGWI ACGGA 5 cut(s) 49, 177, 1916, 2210, 5354
Van91I CCANNNNNTGG 2 cut(s) 144, 3254
Vha464I CTTAAG 2 cut(s) 3550, 3829
VpaK11BI GGWCC 4 cut(s) 164, 632, 2264, 2931
VspI ATTAAT 2 cut(s) 1281, 5046
XagI CCTNNNNNAGG 2 cut(s) 1076, 5002
XbaI TCTAGA 3 cut(s) 2624, 4222, 4862
XceI RCATGY 4 cut(s) 36, 532, 846, 2193
XcmI CCANNNNNNNNNTGG 5 cut(s) 1869, 2485, 2514, 4328, 4793
XhoI CTCGAG 2 cut(s) 4128, 6273
XmaJI CCTAGG 1 cut(s) 5021
XmiI GTMKAC 1 cut(s) 5601
XmnI GAANNNNTTC 2 cut(s) 3427, 5059
ZrmI AGTACT 1 cut(s) 1060
Zsp2I ATGCAT 3 cut(s) 2443, 4687, 4728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.