RLG00000014459

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015886
Physical Location & Seq
Reverse (-)
53452860 .. 53453267
408 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014459

Sequence Viewer

Length: 312 bp
ATGGGTCTGGTTATACCATGGAGTTTCACATTGGCAATGGTTGATGGTTACTCTGTTCTTGTTAAATGCCCCCTTCGTCAGCCTGGAATACTGCTGATCATTGTTGTAGGAGATTGGATCCTATCAATTCTTACTCTGGGTGCAGCATGCTCAACAGCTAGTGTTGTGGACGTCCTGCTCCACGCAGGTGGTCCATATTGCCCTCCAAAGTTTTGTAGCAGGTACAAGATATCTGCTGCAATGGCTTTCATGACATGGTTTCTCTCGTTGGCTTCATCTCTTTTCAATCTCTGGTTACTTCCCTCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

104

Amino Acids

11.15

Weight (kDa)

8.45

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 1 - 88 4.4e-15 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49405
fragaria_vesca FvH4_2g07710
malus_domestica MD10G1084900.v1.1
prunus_persica Prupe.8G107800_v2.0.a1 Prupe.8G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0262031
rosa_laevigata RLG00000014459
rosa_multiflora Rmu_sc0006019.1_g000002
rosa_roxburghii Rroxscaffold_7G00207760
rosa_rugosa Rorug05G0595100
rosa_samantha Rh6AG114500 Rh6BG108700 Rh6CG106000 Rh6DG096400
rosa_wichuraiana Rw6G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
AatII GACGTC 1 cut(s) 174
Acc36I ACCTGC 2 cut(s) 176, 210
AclWI GGATC 2 cut(s) 112, 125
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 82
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AlwI GGATC 2 cut(s) 112, 125
ApeKI GCWGC 2 cut(s) 143, 236
AspS9I GGNCC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 191
BamHI GGATCC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 155, 223
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 96
BfaI CTAG 1 cut(s) 159
BfuAI ACCTGC 2 cut(s) 176, 210
BisI GCNGC 2 cut(s) 144, 237
BlsI GCNGC 2 cut(s) 145, 238
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 17
Bse3DI GCAATG 2 cut(s) 42, 246
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 17
BseMI GCAATG 2 cut(s) 42, 246
BseXI GCAGC 2 cut(s) 155, 223
BsgI GTGCAG 1 cut(s) 162
Bsp143I GATC 2 cut(s) 96, 117
Bsp19I CCATGG 1 cut(s) 17
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 119
BspMI ACCTGC 2 cut(s) 176, 210
BspPI GGATC 2 cut(s) 112, 125
BsrDI GCAATG 2 cut(s) 42, 246
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 2 cut(s) 96, 117
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 148
BstDSI CCRYGG 1 cut(s) 17
BstKTI GATC 2 cut(s) 99, 120
BstMBI GATC 2 cut(s) 96, 117
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 155, 223
BstX2I RGATCY 1 cut(s) 117
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 17
BveI ACCTGC 2 cut(s) 176, 210
Cac8I GCNNGC 1 cut(s) 148
CciI TCATGA 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 223
CviAII CATG 4 cut(s) 18, 147, 250, 255
CviJI RGCY 4 cut(s) 82, 158, 245, 272
CviKI_1 RGCY 4 cut(s) 82, 158, 245, 272
CviQI GTAC 1 cut(s) 223
DpnI GATC 2 cut(s) 98, 119
DpnII GATC 2 cut(s) 96, 117
Eco130I CCWWGG 1 cut(s) 17
Eco32I GATATC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 82
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 4 cut(s) 21, 150, 253, 258
FaiI YATR 6 cut(s) 14, 19, 148, 196, 251, 256
FatI CATG 4 cut(s) 17, 146, 249, 254
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 144, 237
Fsp4HI GCNGC 2 cut(s) 144, 237
FspBI CTAG 1 cut(s) 159
GluI GCNGC 2 cut(s) 144, 237
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 4 cut(s) 21, 150, 253, 258
Hpy166II GTNNAC 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 143, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 4 cut(s) 21, 150, 253, 258
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 96, 117
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 7 cut(s) 69, 96, 122, 171, 188, 205, 277
Lsp1109I GCAGC 2 cut(s) 155, 223
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 47, 294
MalI GATC 2 cut(s) 98, 119
MboI GATC 2 cut(s) 96, 117
MflI RGATCY 1 cut(s) 117
MluCI AATT 1 cut(s) 126
MnlI CCTC 1 cut(s) 213
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 17
NdeII GATC 2 cut(s) 96, 117
NlaIII CATG 4 cut(s) 21, 150, 253, 258
NlaIV GGNNCC 1 cut(s) 119
NspI RCATGY 1 cut(s) 150
OliI CACNNNNGTG 1 cut(s) 186
PaeI GCATGC 1 cut(s) 150
PagI TCATGA 1 cut(s) 249
PaqCI CACCTGC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 145, 238
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 144, 237
Sau3AI GATC 2 cut(s) 96, 117
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 84
SetI ASST 4 cut(s) 160, 174, 190, 224
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 186
SphI GCATGC 1 cut(s) 150
Sse9I AATT 1 cut(s) 126
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 17
TaiI ACGT 1 cut(s) 174
TasI AATT 1 cut(s) 126
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseI GCWGC 2 cut(s) 143, 236
TspDTI ATGAA 2 cut(s) 238, 264
VpaK11BI GGWCC 1 cut(s) 191
XceI RCATGY 1 cut(s) 150
XspI CTAG 1 cut(s) 159
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.