Prupe.8G107800_v2.0.a1

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015886
Physical Location & Seq
Reverse (-)
13842687 .. 13844916
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G107800.2

Sequence Viewer

Length: 459 bp
ATGGATGAGGTACCTGGCTCTGTAGGGACCAGTGCCAGCTTCTCTTTGAGATTGGGTCAGGCCATCTTTTCCTCTGCTTCCCTTCTTTTCATGTCTCTTGGGGTTGAGTTCTACAGCTACACTGCTTTCTGCTACCTGGTAACAATCATGGGTCTGGTTATACCATGGAGTTTCACATTGGCAATGGTGGATGGCTACTCTGTTCTTGTTAAATGTCCTCTTCGACAGCCCGGAATTCTGCTGATCATTGTTGTTGGAGATTGGGTATTATCAATTCTCACTCTAGCTGCAGCATGCTCAACAGCGAGCGTCGTGGACGTCCTGCTTCATGCGAACGGTCCGTATTGCCCTCCAAAGTTTTGCAGCAGGTATAAAATATCTGCTGCTATGGCTTTCATGTCATGGTTCCTGTCTTTGGCTTCATCTCTGTTCAATCTTTGGTTACTTCCGTCCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

153

Amino Acids

16.44

Weight (kDa)

6.51

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49405
fragaria_vesca FvH4_2g07710
malus_domestica MD10G1084900.v1.1
prunus_persica Prupe.8G107800_v2.0.a1 Prupe.8G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0262031
rosa_laevigata RLG00000014459
rosa_multiflora Rmu_sc0006019.1_g000002
rosa_roxburghii Rroxscaffold_7G00207760
rosa_rugosa Rorug05G0595100
rosa_samantha Rh6AG114500 Rh6BG108700 Rh6CG106000 Rh6DG096400
rosa_wichuraiana Rw6G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 357
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 10
AcsI RAATTY 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 1 cut(s) 433
AjnI CCWGG 2 cut(s) 13, 135
AluBI AGCT 3 cut(s) 39, 117, 287
AluI AGCT 3 cut(s) 39, 117, 287
Alw26I GTCTC 1 cut(s) 99
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 4 cut(s) 287, 290, 363, 383
ApoI RAATTY 1 cut(s) 234
Asp718I GGTACC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 27, 338
AsuC2I CCSGG 1 cut(s) 231
AvaII GGWCC 2 cut(s) 27, 338
BanI GGYRCC 1 cut(s) 10
BbvI GCAGC 4 cut(s) 274, 302, 370, 375
BccI CCATC 2 cut(s) 71, 185
BciT130I CCWGG 2 cut(s) 15, 137
BclI TGATCA 1 cut(s) 243
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 3 cut(s) 21, 112, 288
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 4 cut(s) 288, 291, 364, 384
BlsI GCNGC 4 cut(s) 289, 292, 365, 385
Bme1390I CCNGG 3 cut(s) 15, 137, 231
Bme18I GGWCC 2 cut(s) 27, 338
BmgT120I GGNCC 2 cut(s) 27, 338
BmiI GGNNCC 3 cut(s) 12, 28, 407
BmrFI CCNGG 3 cut(s) 15, 137, 231
BpuMI CCSGG 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 2 cut(s) 15, 137
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 10, 196
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 4 cut(s) 274, 302, 370, 375
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 243
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 12, 28, 407
BspMAI CTGCAG 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 243
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 15, 137
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 3 cut(s) 37, 295, 307
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 10, 196
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 2 cut(s) 15, 137
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 3 cut(s) 13, 135, 229
BstSFI CTRYAG 3 cut(s) 21, 112, 288
BstV1I GCAGC 4 cut(s) 274, 302, 370, 375
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 2 cut(s) 10, 196
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 37, 120
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 37, 295, 307
Cfr13I GGNCC 2 cut(s) 27, 338
CpoI CGGWCCG 1 cut(s) 338
CseI GACGC 1 cut(s) 298
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 1 cut(s) 11
CspI CGGWCCG 1 cut(s) 338
CviAII CATG 7 cut(s) 91, 148, 165, 294, 329, 397, 402
CviJI RGCY 9 cut(s) 18, 39, 62, 117, 195, 229, 287, 392, 419
CviKI_1 RGCY 9 cut(s) 18, 39, 62, 117, 195, 229, 287, 392, 419
CviQI GTAC 1 cut(s) 11
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 27, 338
EcoRI GAATTC 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 13, 135
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 7 cut(s) 94, 151, 168, 297, 332, 400, 405
FaqI GGGAC 1 cut(s) 40
FatI CATG 7 cut(s) 90, 147, 164, 293, 328, 396, 401
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 288, 291, 364, 384
FokI GGATG 2 cut(s) 17, 203
Fsp4HI GCNGC 4 cut(s) 288, 291, 364, 384
FspBI CTAG 1 cut(s) 284
GluI GCNGC 4 cut(s) 288, 291, 364, 384
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 7 cut(s) 94, 151, 168, 297, 332, 400, 405
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 2 cut(s) 290, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 7 cut(s) 94, 151, 168, 297, 332, 400, 405
KpnI GGTACC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 1 cut(s) 243
Lsp1109I GCAGC 4 cut(s) 274, 302, 370, 375
MabI ACCWGGT 1 cut(s) 135
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 139, 441
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 1 cut(s) 212
MluCI AATT 2 cut(s) 234, 273
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 3 cut(s) 82, 228, 360
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 3 cut(s) 15, 137, 231
MvaI CCWGG 2 cut(s) 15, 137
MwoI GCNNNNNNNGC 1 cut(s) 389
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 164
NdeII GATC 1 cut(s) 243
NlaIII CATG 7 cut(s) 94, 151, 168, 297, 332, 400, 405
NlaIV GGNNCC 3 cut(s) 12, 28, 407
NspI RCATGY 1 cut(s) 297
PaeI GCATGC 1 cut(s) 297
PkrI GCNGC 4 cut(s) 289, 292, 365, 385
Psp6I CCWGG 2 cut(s) 13, 135
PspGI CCWGG 2 cut(s) 13, 135
PspN4I GGNNCC 3 cut(s) 12, 28, 407
PspPI GGNCC 2 cut(s) 27, 338
PstI CTGCAG 1 cut(s) 292
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
Rsr2I CGGWCCG 1 cut(s) 338
RsrII CGGWCCG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 4 cut(s) 288, 291, 364, 384
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 27, 338
ScrFI CCNGG 3 cut(s) 15, 137, 231
SetI ASST 8 cut(s) 12, 16, 41, 119, 138, 289, 321, 371
SexAI ACCWGGT 1 cut(s) 135
SfcI CTRYAG 3 cut(s) 21, 112, 288
SinI GGWCC 2 cut(s) 27, 338
SphI GCATGC 1 cut(s) 297
Sse9I AATT 2 cut(s) 234, 273
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 13, 135, 229
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 223
TasI AATT 2 cut(s) 234, 273
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 37, 127
TseI GCWGC 4 cut(s) 287, 290, 363, 383
TspDTI ATGAA 4 cut(s) 79, 317, 385, 411
TspGWI ACGGA 2 cut(s) 330, 438
TspRI CASTG 2 cut(s) 37, 127
VpaK11BI GGWCC 2 cut(s) 27, 338
XapI RAATTY 1 cut(s) 234
XceI RCATGY 1 cut(s) 297
XspI CTAG 1 cut(s) 284
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.