AT1G49720
BZIP Family

DNA binding protein binding transcription activator transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18400003 .. 18402628
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49720.2

Sequence Viewer

Length: 1179 bp
ATGGGTACTCACATTGATATCAACAACTTAGGCGGCGATACTTCTAGAGGGAATGAGTCAAAGCCATTGGCGAGGCAGTCTTCGTTATATTCCTTAACGTTTGATGAGCTTCAGAGCACATTAGGTGAGCCGGGGAAAGATTTTGGGTCTATGAATATGGATGAGTTACTCAAGAACATATGGACTGCTGAGGATACTCAAGCCTTTATGACTACTACATCTTCGGTTGCAGCCCCGGGACCTAGTGGTTTTGTTCCGGGAGGAAATGGTTTACAGAGGCAAGGCTCCTTGACCTTGCCTAGAACGCTTAGTCAGAAGACTGTCGATGAAGTCTGGAAATACCTGAATTCGAAAGAAGGTAGTAATGGGAATACTGGAACGGATGCGCTTGAGAGGCAACAGACTTTAGGGGAAATGACTCTGGAAGATTTCTTACTCCGTGCTGGCGTTGTTAAAGAAGATAATACTCAGCAGAACGAAAACAGTAGTAGCGGGTTTTATGCTAACAACGGTGCTGCTGGTTTGGAGTTTGGATTTGGTCAGCCGAATCAAAACAGCATATCGTTCAACGGGAACAATAGTTCTATGATCATGAATCAAGCACCTGGTTTAGGCCTCAAAGTTGGTGGAACCATGCAGCAGCAGCAGCAGCCACATCAGCAGCAGTTGCAGCAGCCACATCAGAGACTGCCTCCAACTATCTTTCCAAAACAAGCGAATGTAACATTTGCGGCGCCTGTAAATATGGTCAACAGGGGTTTATTTGAGACTAGCGCAGATGGTCCAGCCAACAGTAATATGGGAGGAGCAGGGGGTACTGTTACAGCTACTTCTCCTGGGACGAGCAGTGCAGAAAACAATACTTGGTCATCACCAGTTCCTTACGTGTTTGGTCGGGGAAGAAGAAGCAATACGGGCCTGGAGAAGGTTGTTGAGAGAAGGCAAAAGAGAATGATCAAGAATCGGGAATCCGCTGCTAGATCAAGGGCTCGAAAACAGGCTTATACCTTGGAACTGGAAGCTGAGATTGAAAGTCTCAAGCTAGTGAATCAAGATTTGCAGAAGAAACAGGCTGAAATAATGAAAACCCATAATAGTGAGCTAAAGGAATTTTCGAAGCAGCCTCCATTGCTGGCCAAAAGACAATGCTTGAGAAGAACCCTTACCGGTCCGTGGTAA

Protein Analysis

392

Amino Acids

42.73

Weight (kDa)

9.04

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 312 - 359 1.8e-08 Basic region leucine zipper
bZIP_1 PF00170 313 - 363 8.8e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 733
AciI CCGC 4 cut(s) 33, 492, 731, 972
AclI AACGTT 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 1134
AcsI RAATTY 2 cut(s) 346, 1109
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 734
AfaI GTAC 2 cut(s) 7, 817
AfiI CCNNNNNNNGG 3 cut(s) 611, 925, 1173
AflIII ACRYGT 1 cut(s) 885
AgeI ACCGGT 1 cut(s) 1166
AgsI TTSAA 2 cut(s) 568, 1031
AjnI CCWGG 3 cut(s) 604, 835, 918
AloI GAACNNNNNNTCC 2 cut(s) 565, 597
AluBI AGCT 5 cut(s) 109, 827, 1022, 1042, 1102
AluI AGCT 5 cut(s) 109, 827, 1022, 1042, 1102
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 3 cut(s) 679, 761, 1040
AlwNI CAGNNNCTG 1 cut(s) 688
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 3 cut(s) 613, 916, 1134
ApoI RAATTY 2 cut(s) 346, 1109
AsiGI ACCGGT 1 cut(s) 1166
AspLEI GCGC 3 cut(s) 388, 736, 776
AspS9I GGNCC 4 cut(s) 239, 782, 916, 1169
AsuC2I CCSGG 4 cut(s) 132, 236, 237, 258
AsuHPI GGTGA 2 cut(s) 137, 864
AsuII TTCGAA 2 cut(s) 350, 1115
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 3 cut(s) 239, 782, 1169
BalI TGGCCA 1 cut(s) 1136
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 991
BarI GAAGNNNNNNTAC 6 cut(s) 417, 449, 895, 927, 1147, 1179
BbsI GAAGAC 2 cut(s) 72, 323
Bbv12I GWGCWC 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 773
BciT130I CCWGG 3 cut(s) 606, 837, 920
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 2 cut(s) 588, 954
BcnI CCSGG 4 cut(s) 132, 236, 237, 258
BcoDI GTCTC 3 cut(s) 679, 761, 1040
BfaI CTAG 6 cut(s) 45, 243, 300, 771, 978, 1043
BfoI RGCGCY 1 cut(s) 737
BfuI GTATCC 1 cut(s) 187
Bme1390I CCNGG 7 cut(s) 132, 236, 237, 258, 606, 837, 920
Bme18I GGWCC 3 cut(s) 239, 782, 1169
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 4 cut(s) 239, 782, 916, 1169
BmiI GGNNCC 4 cut(s) 240, 286, 631, 735
BmrFI CCNGG 7 cut(s) 132, 236, 237, 258, 606, 837, 920
BmsI GCATC 1 cut(s) 373
BpiI GAAGAC 2 cut(s) 72, 323
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BpmI CTGGAG 1 cut(s) 941
Bpu10I CCTNAGC 1 cut(s) 189
Bpu14I TTCGAA 2 cut(s) 350, 1115
BpuEI CTTGAG 5 cut(s) 155, 183, 410, 1022, 1171
BpuMI CCSGG 4 cut(s) 132, 236, 237, 258
BsaAI YACGTR 1 cut(s) 886
BsaHI GRCGYC 1 cut(s) 734
BsaJI CCNNGG 6 cut(s) 131, 234, 235, 836, 1008, 1172
BsaWI WCCGGW 1 cut(s) 1166
Bsc4I CCNNNNNNNGG 3 cut(s) 611, 925, 1173
Bse118I RCCGGY 1 cut(s) 1166
Bse1I ACTGG 3 cut(s) 379, 875, 1020
Bse3DI GCAATG 1 cut(s) 1127
BseBI CCWGG 3 cut(s) 606, 837, 920
BseDI CCNNGG 6 cut(s) 131, 234, 235, 836, 1008, 1172
BseGI GGATG 2 cut(s) 166, 388
BseLI CCNNNNNNNGG 3 cut(s) 611, 925, 1173
BseMI GCAATG 1 cut(s) 1127
BseMII CTCAG 3 cut(s) 180, 482, 1014
BseNI ACTGG 3 cut(s) 379, 875, 1020
BseRI GAGGAG 1 cut(s) 819
BsgI GTGCAG 1 cut(s) 870
BshFI GGCC 3 cut(s) 615, 918, 1136
BshNI GGYRCC 1 cut(s) 733
BshTI ACCGGT 1 cut(s) 1166
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 4 cut(s) 131, 236, 257, 1167
BslFI GGGAC 2 cut(s) 252, 853
BslI CCNNNNNNNGG 3 cut(s) 611, 925, 1173
BsmAI GTCTC 3 cut(s) 679, 761, 1040
BsmFI GGGAC 2 cut(s) 252, 853
BsnI GGCC 3 cut(s) 615, 918, 1136
BsoBI CYCGRG 1 cut(s) 235
Bsp119I TTCGAA 2 cut(s) 350, 1115
Bsp1286I GDGCHC 2 cut(s) 119, 991
Bsp143I GATC 3 cut(s) 588, 954, 980
BspACI CCGC 4 cut(s) 33, 492, 731, 972
BspANI GGCC 3 cut(s) 615, 918, 1136
BspCNI CTCAG 3 cut(s) 181, 481, 1015
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 4 cut(s) 240, 286, 631, 735
BspT104I TTCGAA 2 cut(s) 350, 1115
BspT107I GGYRCC 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 1127
BsrFI RCCGGY 1 cut(s) 1166
BsrI ACTGG 3 cut(s) 379, 875, 1020
BssAI RCCGGY 1 cut(s) 1166
BssECI CCNNGG 6 cut(s) 131, 234, 235, 836, 1008, 1172
BssMI GATC 3 cut(s) 588, 954, 980
BssNI GRCGYC 1 cut(s) 734
BssT1I CCWWGG 1 cut(s) 1008
Bst2UI CCWGG 3 cut(s) 606, 837, 920
Bst4CI ACNGT 5 cut(s) 322, 485, 512, 794, 820
BstACI GRCGYC 1 cut(s) 734
BstAPI GCANNNNNTGC 1 cut(s) 667
BstBAI YACGTR 1 cut(s) 886
BstBI TTCGAA 2 cut(s) 350, 1115
BstC8I GCNNGC 2 cut(s) 445, 1134
BstDEI CTNAG 5 cut(s) 28, 189, 308, 468, 1023
BstDSI CCRYGG 1 cut(s) 1172
BstENI CCTNNNNNAGG 2 cut(s) 609, 923
BstF5I GGATG 2 cut(s) 166, 388
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 3 cut(s) 388, 736, 776
BstKTI GATC 3 cut(s) 591, 957, 983
BstMAI GTCTC 3 cut(s) 679, 761, 1040
BstMBI GATC 3 cut(s) 588, 954, 980
BstNI CCWGG 3 cut(s) 606, 837, 920
BstSCI CCNGG 7 cut(s) 130, 234, 235, 256, 604, 835, 918
BstV2I GAAGAC 2 cut(s) 72, 323
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 3 cut(s) 615, 918, 1136
BtgI CCRYGG 1 cut(s) 1172
BtsCI GGATG 2 cut(s) 166, 388
BtsI GCAGTG 1 cut(s) 853
BtsIMutI CAGTG 1 cut(s) 853
Cac8I GCNNGC 2 cut(s) 445, 1134
CaiI CAGNNNCTG 1 cut(s) 688
CciI TCATGA 1 cut(s) 591
CfoI GCGC 3 cut(s) 388, 736, 776
Cfr10I RCCGGY 1 cut(s) 1166
Cfr13I GGNCC 4 cut(s) 239, 782, 916, 1169
Cfr9I CCCGGG 1 cut(s) 235
CpoI CGGWCCG 1 cut(s) 1169
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 2 cut(s) 6, 816
CspAI ACCGGT 1 cut(s) 1166
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CspI CGGWCCG 1 cut(s) 1169
CviAII CATG 2 cut(s) 592, 634
CviQI GTAC 2 cut(s) 6, 816
DdeI CTNAG 5 cut(s) 28, 189, 308, 468, 1023
DinI GGCGCC 1 cut(s) 735
DpnI GATC 3 cut(s) 590, 956, 982
DpnII GATC 3 cut(s) 588, 954, 980
EaeI YGGCCR 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 1008
Eco147I AGGCCT 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 991
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 3 cut(s) 239, 782, 1169
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 235
EcoNI CCTNNNNNAGG 2 cut(s) 609, 923
EcoO109I RGGNCCY 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 3 cut(s) 604, 835, 918
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 1008
EcoT38I GRGCYC 1 cut(s) 991
EgeI GGCGCC 1 cut(s) 735
EheI GGCGCC 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 1008
FaeI CATG 2 cut(s) 595, 637
FaqI GGGAC 2 cut(s) 252, 853
FatI CATG 2 cut(s) 591, 633
FauI CCCGC 1 cut(s) 485
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 2 cut(s) 588, 954
FokI GGATG 2 cut(s) 173, 395
FriOI GRGCYC 1 cut(s) 991
FspBI CTAG 6 cut(s) 45, 243, 300, 771, 978, 1043
GlaI GCGC 3 cut(s) 387, 735, 775
GsuI CTGGAG 1 cut(s) 941
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 3 cut(s) 615, 918, 1136
HapII CCGG 4 cut(s) 131, 236, 257, 1167
HhaI GCGC 3 cut(s) 388, 736, 776
Hin1I GRCGYC 1 cut(s) 734
Hin1II CATG 2 cut(s) 595, 637
Hin6I GCGC 3 cut(s) 386, 734, 774
HinP1I GCGC 3 cut(s) 386, 734, 774
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 7 cut(s) 56, 418, 547, 595, 961, 968, 1048
HpaII CCGG 4 cut(s) 131, 236, 257, 1167
HphI GGTGA 2 cut(s) 137, 864
Hpy166II GTNNAC 2 cut(s) 272, 751
Hpy188I TCNGA 3 cut(s) 114, 315, 684
Hpy188III TCNNGA 8 cut(s) 45, 172, 334, 422, 592, 958, 965, 1052
Hpy8I GTNNAC 2 cut(s) 272, 751
HpyAV CCTTC 3 cut(s) 350, 919, 933
HpyCH4III ACNGT 5 cut(s) 322, 485, 512, 794, 820
HpyCH4IV ACGT 2 cut(s) 98, 885
HpyCH4V TGCA 5 cut(s) 230, 637, 670, 851, 1060
HpyF3I CTNAG 5 cut(s) 28, 189, 308, 468, 1023
HpySE526I ACGT 2 cut(s) 98, 885
Hsp92I GRCGYC 1 cut(s) 734
Hsp92II CATG 2 cut(s) 595, 637
HspAI GCGC 3 cut(s) 386, 734, 774
KasI GGCGCC 1 cut(s) 733
Ksp22I TGATCA 2 cut(s) 588, 954
Kzo9I GATC 3 cut(s) 588, 954, 980
LmnI GCTCC 2 cut(s) 290, 806
LweI GCATC 1 cut(s) 373
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 6 cut(s) 45, 243, 300, 771, 978, 1043
MaeII ACGT 2 cut(s) 98, 885
MaeIII GTNAC 3 cut(s) 165, 721, 820
MalI GATC 3 cut(s) 590, 956, 982
MboI GATC 3 cut(s) 588, 954, 980
MboII GAAGA 9 cut(s) 72, 213, 328, 437, 470, 912, 915, 1075, 1167
MhlI GDGCHC 2 cut(s) 119, 991
MlsI TGGCCA 1 cut(s) 1136
MluCI AATT 2 cut(s) 346, 1109
MluNI TGGCCA 1 cut(s) 1136
Mly113I GGCGCC 1 cut(s) 734
MlyI GAGTC 2 cut(s) 65, 412
MmeI TCCRAC 1 cut(s) 719
Mox20I TGGCCA 1 cut(s) 1136
MscI TGGCCA 1 cut(s) 1136
MseI TTAA 2 cut(s) 95, 453
MslI CAYNNNNRTG 1 cut(s) 1095
Msp20I TGGCCA 1 cut(s) 1136
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 4 cut(s) 131, 236, 257, 1167
MspR9I CCNGG 7 cut(s) 132, 236, 237, 258, 606, 837, 920
MvaI CCWGG 3 cut(s) 606, 837, 920
NarI GGCGCC 1 cut(s) 734
NciI CCSGG 4 cut(s) 132, 236, 237, 258
NdeI CATATG 1 cut(s) 179
NdeII GATC 3 cut(s) 588, 954, 980
NlaIII CATG 2 cut(s) 595, 637
NlaIV GGNNCC 4 cut(s) 240, 286, 631, 735
NspV TTCGAA 2 cut(s) 350, 1115
PagI TCATGA 1 cut(s) 591
PceI AGGCCT 1 cut(s) 615
PfeI GAWTC 5 cut(s) 547, 595, 961, 968, 1048
PfoI TCCNGGA 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 1166
PleI GAGTC 2 cut(s) 64, 412
PluTI GGCGCC 1 cut(s) 737
PpsI GAGTC 2 cut(s) 64, 412
Ppu21I YACGTR 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 3 cut(s) 604, 835, 918
PspGI CCWGG 3 cut(s) 604, 835, 918
PspN4I GGNNCC 4 cut(s) 240, 286, 631, 735
PspPI GGNCC 4 cut(s) 239, 782, 916, 1169
PspPPI RGGWCCY 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 688
RsaI GTAC 2 cut(s) 7, 817
RsaNI GTAC 2 cut(s) 6, 816
RseI CAYNNNNRTG 1 cut(s) 1095
Rsr2I CGGWCCG 1 cut(s) 1169
RsrII CGGWCCG 1 cut(s) 1169
SaqAI TTAA 2 cut(s) 95, 453
Sau3AI GATC 3 cut(s) 588, 954, 980
Sau96I GGNCC 4 cut(s) 239, 782, 916, 1169
SchI GAGTC 2 cut(s) 65, 412
ScrFI CCNGG 7 cut(s) 132, 236, 237, 258, 606, 837, 920
SduI GDGCHC 2 cut(s) 119, 991
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 1 cut(s) 373
SfoI GGCGCC 1 cut(s) 735
SfuI TTCGAA 2 cut(s) 350, 1115
SinI GGWCC 3 cut(s) 239, 782, 1169
SmaI CCCGGG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 1095
SmlI CTYRAG 5 cut(s) 170, 198, 389, 1037, 1150
SmoI CTYRAG 5 cut(s) 170, 198, 389, 1037, 1150
Sse9I AATT 2 cut(s) 346, 1109
SseBI AGGCCT 1 cut(s) 615
SsiI CCGC 4 cut(s) 33, 492, 731, 972
SspDI GGCGCC 1 cut(s) 733
SspMI CTAG 6 cut(s) 45, 243, 300, 771, 978, 1043
StuI AGGCCT 1 cut(s) 615
StyD4I CCNGG 7 cut(s) 130, 234, 235, 256, 604, 835, 918
StyI CCWWGG 1 cut(s) 1008
TaaI ACNGT 5 cut(s) 322, 485, 512, 794, 820
TaiI ACGT 2 cut(s) 101, 888
TaqI TCGA 4 cut(s) 324, 350, 991, 1115
TasI AATT 2 cut(s) 346, 1109
TauI GCSGC 2 cut(s) 36, 734
TfiI GAWTC 5 cut(s) 547, 595, 961, 968, 1048
Tru1I TTAA 2 cut(s) 95, 453
Tru9I TTAA 2 cut(s) 95, 453
TscAI CASTG 1 cut(s) 853
TspDTI ATGAA 4 cut(s) 167, 342, 608, 1097
TspGWI ACGGA 3 cut(s) 395, 428, 1161
TspMI CCCGGG 1 cut(s) 235
TspRI CASTG 1 cut(s) 853
VpaK11BI GGWCC 3 cut(s) 239, 782, 1169
XagI CCTNNNNNAGG 2 cut(s) 609, 923
XapI RAATTY 2 cut(s) 346, 1109
XbaI TCTAGA 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XmaI CCCGGG 1 cut(s) 235
XspI CTAG 6 cut(s) 45, 243, 300, 771, 978, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.