Rw6G007720
BZIP Family

ABSCISIC ACID-INSENSITIVE 5-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
12729806 .. 12733783
3978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007720.1

Sequence Viewer

Length: 1224 bp
ATGGGATCTAATATAAACTTCAAGAACTATGGTGATGTGCAAAATGGGGATGTAAATGGTGGGAGGCTAGGTGGGAATTTCTCACTGGCCCGGCAGTCTTCTGTGTACTCCCTGACGTTTGATGAGTTCCAGAACACCATGGGAGGACTTGGAAAGGATTTCGGGTCGATGAACATGGATGAGCTTTTGAAGAATATATGGAGTGCTGAAGAGACTCAAGGAATGGTGCCTTCTACCTGTGGGGCAGCAGAGGGAAATGCCCCTGGGGGGAATTTGCAGAGACAAGGTTCGTTAACTTTGCCGCGGACGCTGAGTCAGAAGACAGTTGATGATGTTTGGAAAGAGTTGATTAGAGACAGTGGTGATGCTAAATATGGTAACCTTGGTGGGGGGCAGAATTTGCCACAGGAACAAAGACAACAGACTTTGGGGGAGATGACTTTGGAGGAGTTTTTGGCCAGAGCAGGGGTGGTGCGAGAAGATGCTCAGGAAATGGCAAGGCCTGGTAATGGTGGATTCTTTGCTGAATTATTCCGTCAAAGTACCAATACCGGTTTAGCTCCTGGGTTCCAACAAGCAAGTCGAAACAATGGTCTTTTGAGTAGTCGAGTAGAGAGTAACAATAATTCGGTTCCTAATCAGTCTCCGAATTTGGCACTGAATGTTGGTGGACTGAGAACTTCGCAGCAACAAACGCACCAGCTTCCCCAACAGCAGCAGCCAATCTTTCCAAAGCCTGCAACTTTATCTTTTTCCCCTTCTATGCATTTAGTAAGCAGTGCTCAGCTAACTAGCCCAAGAAGTAGGGGACCGGTCTCTGTGGTTGTGGAACCTTCTAGGAACACTGCTTTCTCTCAAGGTGGTGGGTTTCCGAGTGCAGGGATTGGAATGGGCGGTTTAGGTGCTGGAGGTGTTACAGTTGCATCAAAATCTCCCATAAATCAGATGTCACCAGATGTGATTGCTAAGAGCAGTGCAGATACATCTTCATTGTCACCAGTTCCTTACTTGTTTACTCGTGGAAGGAAAGCCAATGGAGCTCTGGAGAAAGTAGTTGAGAGAAGGCAAAGGAGAATGATAAAGAATAGAGAATCTGCTGCAAGGTCTCGAGCTCGTAAACAGGCCTACACCTTGGAACTAGAGGCAGAAGTTGCAAAACTTAAAGAAATGAATGAAGAATTACAGAGAAAACAGGTACGGTACTCCGGGCACTGGTTGTATTAG

Protein Analysis

407

Amino Acids

43.96

Weight (kDa)

9.56

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 353 - 398 1.7e-08 Basic region leucine zipper
bZIP_1 PF00170 354 - 397 6.3e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccII CGCG 1 cut(s) 304
AciI CCGC 3 cut(s) 302, 304, 894
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 4 cut(s) 76, 271, 397, 649
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 4 cut(s) 107, 544, 1197, 1202
AfiI CCNNNNNNNGG 6 cut(s) 267, 388, 465, 509, 878, 1212
AgeI ACCGGT 2 cut(s) 551, 811
AgsI TTSAA 2 cut(s) 22, 190
AhdI GACNNNNNGTC 1 cut(s) 312
AjnI CCWGG 3 cut(s) 262, 502, 562
AluBI AGCT 6 cut(s) 184, 560, 703, 787, 1040, 1112
AluI AGCT 6 cut(s) 184, 560, 703, 787, 1040, 1112
Alw21I GWGCWC 3 cut(s) 784, 1042, 1114
Alw26I GTCTC 6 cut(s) 206, 274, 348, 648, 820, 1110
AlwI GGATC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 1107
AoxI GGCC 4 cut(s) 87, 456, 500, 1122
ApeKI GCWGC 5 cut(s) 245, 685, 715, 718, 1097
ApoI RAATTY 4 cut(s) 76, 271, 397, 649
ArsI GACNNNNNNTTYG 2 cut(s) 577, 609
AsiGI ACCGGT 2 cut(s) 551, 811
AspS9I GGNCC 2 cut(s) 88, 809
AsuC2I CCSGG 2 cut(s) 91, 1207
AsuHPI GGTGA 4 cut(s) 44, 374, 942, 987
AvaI CYCGRG 1 cut(s) 1107
AvaII GGWCC 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 1212
BalI TGGCCA 1 cut(s) 458
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 2 cut(s) 1042, 1114
BauI CACGAG 1 cut(s) 1017
BbsI GAAGAC 2 cut(s) 90, 326
Bbv12I GWGCWC 3 cut(s) 784, 1042, 1114
BbvI GCAGC 5 cut(s) 257, 697, 727, 730, 1084
BciT130I CCWGG 3 cut(s) 264, 504, 564
BcnI CCSGG 2 cut(s) 91, 1207
BcoDI GTCTC 6 cut(s) 206, 274, 348, 648, 820, 1110
BfaI CTAG 4 cut(s) 68, 792, 837, 1139
BisI GCNGC 6 cut(s) 246, 302, 686, 716, 719, 1098
BlpI GCTNAGC 1 cut(s) 783
BlsI GCNGC 6 cut(s) 247, 303, 687, 717, 720, 1099
Bme1390I CCNGG 5 cut(s) 91, 264, 504, 564, 1207
Bme18I GGWCC 1 cut(s) 809
BmeRI GACNNNNNGTC 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 1107
BmgT120I GGNCC 2 cut(s) 88, 809
BmiI GGNNCC 5 cut(s) 228, 569, 633, 810, 831
BmrFI CCNGG 5 cut(s) 91, 264, 504, 564, 1207
BmsI GCATC 3 cut(s) 355, 472, 932
BpiI GAAGAC 2 cut(s) 90, 326
BpmI CTGGAG 2 cut(s) 927, 1064
Bpu10I CCTNAGC 1 cut(s) 486
Bpu1102I GCTNAGC 1 cut(s) 783
BpuEI CTTGAG 2 cut(s) 201, 840
BpuMI CCSGG 2 cut(s) 91, 1207
BsaI GGTCTC 2 cut(s) 820, 1110
BsaJI CCNNGG 7 cut(s) 138, 262, 263, 302, 382, 563, 1131
BsaWI WCCGGW 2 cut(s) 551, 811
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 6 cut(s) 267, 388, 465, 509, 878, 1212
Bse118I RCCGGY 2 cut(s) 551, 811
Bse1I ACTGG 3 cut(s) 90, 998, 1217
BseBI CCWGG 3 cut(s) 264, 504, 564
BseDI CCNNGG 7 cut(s) 138, 262, 263, 302, 382, 563, 1131
BseGI GGATG 2 cut(s) 55, 184
BseLI CCNNNNNNNGG 6 cut(s) 267, 388, 465, 509, 878, 1212
BseMII CTCAG 4 cut(s) 302, 500, 665, 797
BseNI ACTGG 3 cut(s) 90, 998, 1217
BseRI GAGGAG 1 cut(s) 461
BseSI GKGCMC 1 cut(s) 1212
BseXI GCAGC 5 cut(s) 257, 697, 727, 730, 1084
BsgI GTGCAG 2 cut(s) 897, 996
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 4 cut(s) 89, 458, 502, 1124
BshNI GGYRCC 1 cut(s) 226
BshTI ACCGGT 2 cut(s) 551, 811
BsiHKAI GWGCWC 3 cut(s) 784, 1042, 1114
BsiHKCI CYCGRG 1 cut(s) 1107
BsiSI CCGG 4 cut(s) 91, 552, 812, 1206
BslFI GGGAC 1 cut(s) 822
BslI CCNNNNNNNGG 6 cut(s) 267, 388, 465, 509, 878, 1212
BsmAI GTCTC 6 cut(s) 206, 274, 348, 648, 820, 1110
BsmFI GGGAC 1 cut(s) 822
BsnI GGCC 4 cut(s) 89, 458, 502, 1124
Bso31I GGTCTC 2 cut(s) 820, 1110
BsoBI CYCGRG 1 cut(s) 1107
Bsp1286I GDGCHC 4 cut(s) 784, 1042, 1114, 1212
Bsp143I GATC 1 cut(s) 5
Bsp1720I GCTNAGC 1 cut(s) 783
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 3 cut(s) 302, 304, 894
BspANI GGCC 4 cut(s) 89, 458, 502, 1124
BspCNI CTCAG 4 cut(s) 303, 499, 666, 796
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 5 cut(s) 228, 569, 633, 810, 831
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 226
BspTNI GGTCTC 2 cut(s) 820, 1110
BsrFI RCCGGY 2 cut(s) 551, 811
BsrI ACTGG 3 cut(s) 90, 998, 1217
BssAI RCCGGY 2 cut(s) 551, 811
BssECI CCNNGG 7 cut(s) 138, 262, 263, 302, 382, 563, 1131
BssMI GATC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1017
BssT1I CCWWGG 3 cut(s) 138, 382, 1131
Bst2BI CACGAG 1 cut(s) 1017
Bst2UI CCWGG 3 cut(s) 264, 504, 564
Bst4CI ACNGT 4 cut(s) 325, 359, 919, 1200
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 400, 1151
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 5 cut(s) 311, 486, 674, 783, 966
BstDSI CCRYGG 2 cut(s) 138, 302
BstEII GGTNACC 1 cut(s) 377
BstF5I GGATG 2 cut(s) 55, 184
BstFNI CGCG 1 cut(s) 304
BstKTI GATC 1 cut(s) 8
BstMAI GTCTC 6 cut(s) 206, 274, 348, 648, 820, 1110
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 5 cut(s) 307, 400, 694, 1037, 1151
BstNI CCWGG 3 cut(s) 264, 504, 564
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 5 cut(s) 89, 262, 502, 562, 1205
BstSLI GKGCMC 1 cut(s) 1212
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 5 cut(s) 257, 697, 727, 730, 1084
BstV2I GAAGAC 2 cut(s) 90, 326
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 4 cut(s) 89, 458, 502, 1124
BtgI CCRYGG 2 cut(s) 138, 302
BtsCI GGATG 2 cut(s) 55, 184
BtsI GCAGTG 3 cut(s) 784, 843, 979
BtsIMutI CAGTG 7 cut(s) 83, 364, 656, 784, 843, 979, 1210
Cac8I GCNNGC 1 cut(s) 738
Cfr10I RCCGGY 2 cut(s) 551, 811
Cfr13I GGNCC 2 cut(s) 88, 809
Cfr42I CCGCGG 1 cut(s) 305
CseI GACGC 1 cut(s) 316
Csp6I GTAC 4 cut(s) 106, 543, 1196, 1201
CspAI ACCGGT 2 cut(s) 551, 811
CviAII CATG 2 cut(s) 139, 175
CviQI GTAC 4 cut(s) 106, 543, 1196, 1201
DdeI CTNAG 5 cut(s) 311, 486, 674, 783, 966
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
DriI GACNNNNNGTC 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 204
Eam1105I GACNNNNNGTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 2 cut(s) 1040, 1112
Eco130I CCWWGG 3 cut(s) 138, 382, 1131
Eco147I AGGCCT 2 cut(s) 502, 1124
Eco24I GRGCYC 2 cut(s) 1042, 1114
Eco31I GGTCTC 2 cut(s) 820, 1110
Eco47I GGWCC 1 cut(s) 809
Eco53kI GAGCTC 2 cut(s) 1040, 1112
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 1107
Eco91I GGTNACC 1 cut(s) 377
EcoICRI GAGCTC 2 cut(s) 1040, 1112
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 3 cut(s) 262, 502, 562
EcoT14I CCWWGG 3 cut(s) 138, 382, 1131
EcoT22I ATGCAT 1 cut(s) 768
EcoT38I GRGCYC 2 cut(s) 1042, 1114
ErhI CCWWGG 3 cut(s) 138, 382, 1131
FaeI CATG 2 cut(s) 142, 178
FaiI YATR 9 cut(s) 14, 30, 140, 176, 197, 199, 375, 764, 938
FaqI GGGAC 1 cut(s) 822
FatI CATG 2 cut(s) 138, 174
Fnu4HI GCNGC 6 cut(s) 246, 302, 686, 716, 719, 1098
FokI GGATG 2 cut(s) 62, 191
FriOI GRGCYC 2 cut(s) 1042, 1114
Fsp4HI GCNGC 6 cut(s) 246, 302, 686, 716, 719, 1098
FspBI CTAG 4 cut(s) 68, 792, 837, 1139
GluI GCNGC 6 cut(s) 246, 302, 686, 716, 719, 1098
GsuI CTGGAG 2 cut(s) 927, 1064
HaeIII GGCC 4 cut(s) 89, 458, 502, 1124
HapII CCGG 4 cut(s) 91, 552, 812, 1206
HgaI GACGC 1 cut(s) 316
Hin1II CATG 2 cut(s) 142, 178
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 4 cut(s) 214, 313, 516, 1091
HpaI GTTAAC 1 cut(s) 294
HpaII CCGG 4 cut(s) 91, 552, 812, 1206
HphI GGTGA 4 cut(s) 44, 374, 942, 987
Hpy166II GTNNAC 5 cut(s) 106, 294, 671, 1014, 1118
Hpy188I TCNGA 4 cut(s) 318, 648, 873, 945
Hpy188III TCNNGA 5 cut(s) 22, 130, 488, 1043, 1107
Hpy8I GTNNAC 5 cut(s) 106, 294, 671, 1014, 1118
HpyAV CCTTC 5 cut(s) 240, 768, 843, 1017, 1056
HpyCH4III ACNGT 4 cut(s) 325, 359, 919, 1200
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 9 cut(s) 40, 277, 740, 766, 878, 923, 977, 1100, 1154
HpyF10VI GCNNNNNNNGC 5 cut(s) 307, 400, 694, 1037, 1151
HpyF3I CTNAG 5 cut(s) 311, 486, 674, 783, 966
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 142, 178
KspAI GTTAAC 1 cut(s) 294
KspI CCGCGG 1 cut(s) 305
Kzo9I GATC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 565, 1037
Lsp1109I GCAGC 5 cut(s) 257, 697, 727, 730, 1084
LweI GCATC 3 cut(s) 355, 472, 932
MaeI CTAG 4 cut(s) 68, 792, 837, 1139
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 5 cut(s) 377, 617, 913, 948, 993
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 7 cut(s) 90, 202, 221, 331, 491, 978, 1187
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 4 cut(s) 784, 1042, 1114, 1212
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 7 cut(s) 76, 271, 397, 527, 625, 649, 1178
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 2 cut(s) 208, 322
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 6 cut(s) 57, 137, 244, 439, 902, 1135
Mox20I TGGCCA 1 cut(s) 458
Mph1103I ATGCAT 1 cut(s) 768
MscI TGGCCA 1 cut(s) 458
MseI TTAA 2 cut(s) 293, 1161
Msp20I TGGCCA 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 4 cut(s) 91, 552, 812, 1206
MspR9I CCNGG 5 cut(s) 91, 264, 504, 564, 1207
MvaI CCWGG 3 cut(s) 264, 504, 564
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 5 cut(s) 307, 400, 694, 1037, 1151
NciI CCSGG 2 cut(s) 91, 1207
NcoI CCATGG 1 cut(s) 138
NdeII GATC 1 cut(s) 5
NlaIII CATG 2 cut(s) 142, 178
NlaIV GGNNCC 5 cut(s) 228, 569, 633, 810, 831
NmuCI GTSAC 2 cut(s) 948, 993
NsiI ATGCAT 1 cut(s) 768
PaeR7I CTCGAG 1 cut(s) 1107
PasI CCCWGGG 1 cut(s) 263
PceI AGGCCT 2 cut(s) 502, 1124
PfeI GAWTC 2 cut(s) 516, 1091
PinAI ACCGGT 2 cut(s) 551, 811
PkrI GCNGC 6 cut(s) 247, 303, 687, 717, 720, 1099
PleI GAGTC 2 cut(s) 208, 321
PpsI GAGTC 2 cut(s) 208, 321
Psp124BI GAGCTC 2 cut(s) 1042, 1114
Psp6I CCWGG 3 cut(s) 262, 502, 562
PspEI GGTNACC 1 cut(s) 377
PspGI CCWGG 3 cut(s) 262, 502, 562
PspN4I GGNNCC 5 cut(s) 228, 569, 633, 810, 831
PspPI GGNCC 2 cut(s) 88, 809
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 4 cut(s) 107, 544, 1197, 1202
RsaNI GTAC 4 cut(s) 106, 543, 1196, 1201
SacI GAGCTC 2 cut(s) 1042, 1114
SacII CCGCGG 1 cut(s) 305
SaqAI TTAA 2 cut(s) 293, 1161
SatI GCNGC 6 cut(s) 246, 302, 686, 716, 719, 1098
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 2 cut(s) 88, 809
SchI GAGTC 2 cut(s) 208, 322
ScrFI CCNGG 5 cut(s) 91, 264, 504, 564, 1207
SduI GDGCHC 4 cut(s) 784, 1042, 1114, 1212
SfaNI GCATC 3 cut(s) 355, 472, 932
Sfr274I CTCGAG 1 cut(s) 1107
Sfr303I CCGCGG 1 cut(s) 305
SgrBI CCGCGG 1 cut(s) 305
SinI GGWCC 1 cut(s) 809
SlaI CTCGAG 1 cut(s) 1107
SmlI CTYRAG 3 cut(s) 216, 855, 1107
SmoI CTYRAG 3 cut(s) 216, 855, 1107
Sse9I AATT 7 cut(s) 76, 271, 397, 527, 625, 649, 1178
SseBI AGGCCT 2 cut(s) 502, 1124
SsiI CCGC 3 cut(s) 302, 304, 894
SspMI CTAG 4 cut(s) 68, 792, 837, 1139
SstI GAGCTC 2 cut(s) 1042, 1114
StuI AGGCCT 2 cut(s) 502, 1124
StyD4I CCNGG 5 cut(s) 89, 262, 502, 562, 1205
StyI CCWWGG 3 cut(s) 138, 382, 1131
TaaI ACNGT 4 cut(s) 325, 359, 919, 1200
TaiI ACGT 1 cut(s) 119
TaqI TCGA 4 cut(s) 167, 583, 607, 1108
TasI AATT 7 cut(s) 76, 271, 397, 527, 625, 649, 1178
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 2 cut(s) 516, 1091
Tru1I TTAA 2 cut(s) 293, 1161
Tru9I TTAA 2 cut(s) 293, 1161
TscAI CASTG 7 cut(s) 90, 364, 663, 784, 850, 979, 1217
TseFI GTSAC 2 cut(s) 948, 993
TseI GCWGC 5 cut(s) 245, 685, 715, 718, 1097
Tsp45I GTSAC 2 cut(s) 948, 993
TspDTI ATGAA 4 cut(s) 185, 978, 1184, 1188
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 7 cut(s) 90, 364, 663, 784, 850, 979, 1217
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 4 cut(s) 76, 271, 397, 649
XcmI CCANNNNNNNNNTGG 2 cut(s) 466, 1039
XhoI CTCGAG 1 cut(s) 1107
XspI CTAG 4 cut(s) 68, 792, 837, 1139
Zsp2I ATGCAT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.