Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004004

Physical Location & Seq

Genomic Coordinates Forward (+)

59023805 .. 59027751

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00208870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCAAGGCCTGGTAATGGTGGATTCTTTGCTGAATTATTCCGTCAAAGTAACAATACCGGTTTAGCTCCTGGGTTCCAACAAGCAAGTCGAAACAATGGTCTTTTGAGTAGTCGAGTAGAGAGTAACAATAATTCGGTTCCTAATCAGTCTCCGAATTTGGCACTGAATGTTGGTGGACTGAGAACTTCGCAGCAACAAACACACCAGCTTCCCCAACAGCAGCAGCCAATCTTCCCAAAGCCTGCAACTTTATCTTTTTCCCCTTCTATGCATTTAGTAAGCAATGCTCAGCTAACTAGCCCAAGAAGTAGGGGACCGGTCTCTGCAGTTGTGGAACCTTCTAGGAACACTGCTTTCTCTCAAGGTGGTGGGTTTCCGAGTGCAGGGATTGGAATGGGTGGTTTAGGTGCTGGAGGTGTTACAGTTGCATCAAAATCTCCCATAAATCAGATGTCACCAGATGTGATTGCTAAGAGCAGTGCAGATACATCTTCATTGTCACCAGTTCCTTACATGTTTACTCGCGGAAGGAAAGCCAATGGAGCTTTGGAGAAAGTAGTTGAGAGAAGGCAAAGGAGAATGATAAAGAACAGAGAATCTGCTGCAAGGTCTCGAGCTCGTAAACAGGCCTACACCTTGGAACTAGAGGCAGAAGTTGCAAAACTTAAAGAAATGAATGAAGAATTACAGAGAAAACAGGCTGAAATTGTGGAAATGCAGAAAGATCAGATTTTGGAGACAATGCAGCGGAAATGGGGAGGTAAAAGACAGTGCTTGAGACGAACATTGACTGGCCCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905959 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

268

Amino Acids

29.19

Weight (kDa)

11.04

Isoelectric Point (pI)

67.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	189 - 236	5e-09	Basic region leucine zipper
bZIP_1	PF00170	190 - 239	1e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49720 AT1G49720 AT1G49720 AT3G19290 AT3G19290 AT3G19290 AT3G19290 AT3G19290
fragaria_vesca	FvH4_2g05900 FvH4_2g05900 FvH4_2g05900 FvH4_2g05900 FvH4_2g05900 FvH4_2g05900
malus_domestica	MD05G1082000.v1.1
prunus_persica	Prupe.8G126600_v2.0.a1 Prupe.8G126600_v2.0.a1 Prupe.8G126600_v2.0.a1 Prupe.8G126600_v2.0.a1
pyrus_communis	pycom05g07690
rosa_chinensis	RchiOBHm_Chr6g0257641
rosa_laevigata	RLG00000014714
rosa_multiflora	Rmu_sc0006683.1_g000019 Rmu_sc0041937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00208870
rosa_rugosa	Rorug05G0569700 Rorug05G0569800 Rorug05G0569900
rosa_samantha	Rh6AG086200 Rh6BG080300 Rh6CG075300 Rh6DG072200
rosa_wichuraiana	Rw6G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	528
AciI	CCGC	2 cut(s)	528, 751
AcsI	RAATTY	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	17, 386
AflIII	ACRYGT	1 cut(s)	516
AgeI	ACCGGT	2 cut(s)	59, 319
AjnI	CCWGG	2 cut(s)	10, 70
AluBI	AGCT	5 cut(s)	68, 211, 295, 548, 620
AluI	AGCT	5 cut(s)	68, 211, 295, 548, 620
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	5 cut(s)	156, 328, 618, 734, 775
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	3 cut(s)	8, 630, 796
ApeKI	GCWGC	5 cut(s)	193, 223, 226, 605, 748
ApoI	RAATTY	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AsiGI	ACCGGT	2 cut(s)	59, 319
AspS9I	GGNCC	2 cut(s)	317, 797
AsuHPI	GGTGA	2 cut(s)	450, 495
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	622
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	5 cut(s)	205, 235, 238, 592, 760
BciT130I	CCWGG	2 cut(s)	12, 72
BcoDI	GTCTC	5 cut(s)	156, 328, 618, 734, 775
BfaI	CTAG	3 cut(s)	300, 345, 647
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	5 cut(s)	194, 224, 227, 606, 749
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	5 cut(s)	195, 225, 228, 607, 750
Bme1390I	CCNGG	2 cut(s)	12, 72
Bme18I	GGWCC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	317, 797
BmiI	GGNNCC	4 cut(s)	77, 141, 318, 339
BmrFI	CCNGG	2 cut(s)	12, 72
BmsI	GCATC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	435
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	348, 799
BsaI	GGTCTC	2 cut(s)	328, 618
BsaJI	CCNNGG	3 cut(s)	71, 639, 800
BsaWI	WCCGGW	2 cut(s)	59, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 386
Bse118I	RCCGGY	2 cut(s)	59, 319
Bse1I	ACTGG	2 cut(s)	506, 799
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	12, 72
BseDI	CCNNGG	3 cut(s)	71, 639, 800
BseLI	CCNNNNNNNGG	2 cut(s)	17, 386
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	173, 305
BseNI	ACTGG	2 cut(s)	506, 799
BseXI	GCAGC	5 cut(s)	205, 235, 238, 592, 760
BsgI	GTGCAG	2 cut(s)	405, 504
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	10, 632, 798
BshTI	ACCGGT	2 cut(s)	59, 319
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	2 cut(s)	60, 320
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	17, 386
BsmAI	GTCTC	5 cut(s)	156, 328, 618, 734, 775
BsmBI	CGTCTC	1 cut(s)	775
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	10, 632, 798
Bso31I	GGTCTC	2 cut(s)	328, 618
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	1 cut(s)	727
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	2 cut(s)	528, 751
BspANI	GGCC	3 cut(s)	10, 632, 798
BspCNI	CTCAG	2 cut(s)	174, 304
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	4 cut(s)	77, 141, 318, 339
BspMAI	CTGCAG	1 cut(s)	331
BspTNI	GGTCTC	2 cut(s)	328, 618
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	2 cut(s)	59, 319
BsrI	ACTGG	2 cut(s)	506, 799
BssAI	RCCGGY	2 cut(s)	59, 319
BssECI	CCNNGG	3 cut(s)	71, 639, 800
BssMI	GATC	1 cut(s)	727
BssT1I	CCWWGG	2 cut(s)	639, 800
Bst2UI	CCWGG	2 cut(s)	12, 72
Bst4CI	ACNGT	2 cut(s)	427, 774
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	182, 291, 474
BstFNI	CGCG	1 cut(s)	528
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	5 cut(s)	156, 328, 618, 734, 775
BstMBI	GATC	1 cut(s)	727
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 659
BstNI	CCWGG	2 cut(s)	12, 72
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	2 cut(s)	10, 70
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	5 cut(s)	205, 235, 238, 592, 760
BsuRI	GGCC	3 cut(s)	10, 632, 798
BtsI	GCAGTG	2 cut(s)	351, 487
BtsIMutI	CAGTG	4 cut(s)	164, 351, 487, 779
Cac8I	GCNNGC	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	59, 319
Cfr13I	GGNCC	2 cut(s)	317, 797
CspAI	ACCGGT	2 cut(s)	59, 319
CviAII	CATG	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	182, 291, 474
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
Ecl136II	GAGCTC	1 cut(s)	620
Eco130I	CCWWGG	2 cut(s)	639, 800
Eco147I	AGGCCT	2 cut(s)	10, 632
Eco24I	GRGCYC	1 cut(s)	622
Eco31I	GGTCTC	2 cut(s)	328, 618
Eco47I	GGWCC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	620
Eco88I	CYCGRG	1 cut(s)	615
EcoICRI	GAGCTC	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	10, 70
EcoT14I	CCWWGG	2 cut(s)	639, 800
EcoT22I	ATGCAT	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	622
ErhI	CCWWGG	2 cut(s)	639, 800
Esp3I	CGTCTC	1 cut(s)	775
FaeI	CATG	1 cut(s)	520
FaiI	YATR	3 cut(s)	272, 446, 518
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	1 cut(s)	516
Fnu4HI	GCNGC	5 cut(s)	194, 224, 227, 606, 749
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	5 cut(s)	194, 224, 227, 606, 749
FspBI	CTAG	3 cut(s)	300, 345, 647
GluI	GCNGC	5 cut(s)	194, 224, 227, 606, 749
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	10, 632, 798
HapII	CCGG	2 cut(s)	60, 320
Hin1II	CATG	1 cut(s)	520
HinfI	GANTC	2 cut(s)	24, 599
HpaII	CCGG	2 cut(s)	60, 320
HphI	GGTGA	2 cut(s)	450, 495
Hpy166II	GTNNAC	3 cut(s)	179, 522, 626
Hpy188I	TCNGA	4 cut(s)	156, 381, 453, 732
Hpy188III	TCNNGA	1 cut(s)	615
Hpy8I	GTNNAC	3 cut(s)	179, 522, 626
HpyAV	CCTTC	4 cut(s)	276, 351, 525, 564
HpyCH4III	ACNGT	2 cut(s)	427, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 659
HpyF3I	CTNAG	3 cut(s)	182, 291, 474
Hsp92II	CATG	1 cut(s)	520
Kzo9I	GATC	1 cut(s)	727
LmnI	GCTCC	2 cut(s)	73, 545
Lsp1109I	GCAGC	5 cut(s)	205, 235, 238, 592, 760
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	3 cut(s)	300, 345, 647
MaeIII	GTNAC	5 cut(s)	50, 125, 421, 456, 501
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	3 cut(s)	226, 486, 695
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	5 cut(s)	35, 133, 157, 686, 708
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	410, 643, 755
Mph1103I	ATGCAT	1 cut(s)	276
MseI	TTAA	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	751
MspI	CCGG	2 cut(s)	60, 320
MspR9I	CCNGG	2 cut(s)	12, 72
MvaI	CCWGG	2 cut(s)	12, 72
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	545, 659
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	1 cut(s)	520
NlaIV	GGNNCC	4 cut(s)	77, 141, 318, 339
NmuCI	GTSAC	2 cut(s)	456, 501
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	615
PceI	AGGCCT	2 cut(s)	10, 632
PciI	ACATGT	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	24, 599
PinAI	ACCGGT	2 cut(s)	59, 319
PkrI	GCNGC	5 cut(s)	195, 225, 228, 607, 750
PscI	ACATGT	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	10, 70
PspGI	CCWGG	2 cut(s)	10, 70
PspN4I	GGNNCC	4 cut(s)	77, 141, 318, 339
PspPI	GGNCC	2 cut(s)	317, 797
PstI	CTGCAG	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	622
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	5 cut(s)	194, 224, 227, 606, 749
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	2 cut(s)	317, 797
ScrFI	CCNGG	2 cut(s)	12, 72
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	327
Sfr274I	CTCGAG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	615
SmlI	CTYRAG	3 cut(s)	363, 615, 778
SmoI	CTYRAG	3 cut(s)	363, 615, 778
Sse9I	AATT	5 cut(s)	35, 133, 157, 686, 708
SseBI	AGGCCT	2 cut(s)	10, 632
SsiI	CCGC	2 cut(s)	528, 751
SspMI	CTAG	3 cut(s)	300, 345, 647
SstI	GAGCTC	1 cut(s)	622
StuI	AGGCCT	2 cut(s)	10, 632
StyD4I	CCNGG	2 cut(s)	10, 70
StyI	CCWWGG	2 cut(s)	639, 800
TaaI	ACNGT	2 cut(s)	427, 774
TaqI	TCGA	3 cut(s)	91, 115, 616
TasI	AATT	5 cut(s)	35, 133, 157, 686, 708
TfiI	GAWTC	2 cut(s)	24, 599
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	4 cut(s)	171, 358, 487, 779
TseFI	GTSAC	2 cut(s)	456, 501
TseI	GCWGC	5 cut(s)	193, 223, 226, 605, 748
Tsp45I	GTSAC	2 cut(s)	456, 501
TspDTI	ATGAA	3 cut(s)	486, 692, 696
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	4 cut(s)	171, 358, 487, 779
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	615
XspI	CTAG	3 cut(s)	300, 345, 647
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.