Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004004

Physical Location & Seq

Genomic Coordinates Reverse (-)

76292019 .. 76292666

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0569800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGCAATGGCTCTCTAGCAACCTTCCTCTTCGGAGAGTCAAGACCAAACTGGAATACAAGAAAAAAAATTGCCTTGGGAACTGCAAGAGGGCTCTTGTATTTGCATGAGGAGTGCAGCAACCAAATCATACATTGTGACATTAAGCCTCAAAACATTCTTCTAGACGATTCTTTCACAGCAAGAATAGCAGACTTTGGGGTATGCAAGCTTCTGAAATCTGACCAAACTCGAACAGCTACTAGAATCAGAGGCACAAAAGGTTATGTTGCTCCTGAATGGTTCAAAAGTATGCCTGTCACAGTGAAGGTTGATGTTTACAGCTACGGCATGGTGTTGTTGGAGATTGTTTGCTGCAGGAAAAACTACGAACCAGAAGCACCAGCTGAAGATCAAATGATATTAGCCGATTGGGCATACGATTGCTATAAGCAAAAGAAACTGCATCTGTTGTGGCAGAATGTAGGCGACGATCAGGAAATGGATGGCATCGAAAAGTTGGAGAAGTATTTGATGATTGCATTTTGGTGCATTCAAGAGGATCCATCAGTAAGACCTACCATAAAGAAAGTGACACAGATGCTCGAAGGGACAGTTGAAGTCTCAGTGCCTCCAAATCTGTCCTCATTATATGTTCAATATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905959 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

215

Amino Acids

24.64

Weight (kDa)

6.32

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 195	2e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 193	7e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49720 AT1G49720 AT1G49720 AT3G19290 AT3G19290 AT3G19290 AT3G19290 AT3G19290
fragaria_vesca	FvH4_2g05900 FvH4_2g05900 FvH4_2g05900 FvH4_2g05900 FvH4_2g05900 FvH4_2g05900
malus_domestica	MD05G1082000.v1.1
prunus_persica	Prupe.8G126600_v2.0.a1 Prupe.8G126600_v2.0.a1 Prupe.8G126600_v2.0.a1 Prupe.8G126600_v2.0.a1
pyrus_communis	pycom05g07690
rosa_chinensis	RchiOBHm_Chr6g0257641
rosa_laevigata	RLG00000014714
rosa_multiflora	Rmu_sc0006683.1_g000019 Rmu_sc0041937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00208870
rosa_rugosa	Rorug05G0569700 Rorug05G0569800 Rorug05G0569900
rosa_samantha	Rh6AG086200 Rh6BG080300 Rh6CG075300 Rh6DG072200
rosa_wichuraiana	Rw6G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	536, 549
AcuI	CTGAAG	1 cut(s)	408
AgsI	TTSAA	4 cut(s)	286, 536, 599, 638
AluBI	AGCT	4 cut(s)	211, 239, 324, 386
AluI	AGCT	4 cut(s)	211, 239, 324, 386
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	536, 549
ApeKI	GCWGC	2 cut(s)	117, 354
BamHI	GGATCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	195, 227
BbvI	GCAGC	2 cut(s)	129, 341
BccI	CCATC	2 cut(s)	479, 553
BceAI	ACGGC	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	3 cut(s)	17, 164, 243
BfmI	CTRYAG	1 cut(s)	355
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	2 cut(s)	118, 355
BlsI	GCNGC	2 cut(s)	119, 356
BmiI	GGNNCC	1 cut(s)	543
BmsI	GCATC	3 cut(s)	454, 498, 570
BsaJI	CCNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	490
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	129, 341
BsgI	GTGCAG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	391, 472, 541
BspCNI	CTCAG	1 cut(s)	617
BspLI	GGNNCC	1 cut(s)	543
BspMAI	CTGCAG	1 cut(s)	359
BspPI	GGATC	2 cut(s)	536, 549
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	391, 472, 541
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	304, 595
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	3 cut(s)	394, 475, 544
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	3 cut(s)	391, 472, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 413
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	129, 341
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	309, 612
Cac8I	GCNNGC	1 cut(s)	209
CviAII	CATG	2 cut(s)	107, 331
CviJI	RGCY	8 cut(s)	12, 94, 148, 211, 239, 324, 386, 407
CviKI_1	RGCY	8 cut(s)	12, 94, 148, 211, 239, 324, 386, 407
DdeI	CTNAG	1 cut(s)	604
DpnI	GATC	3 cut(s)	393, 474, 543
DpnII	GATC	3 cut(s)	391, 472, 541
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	110, 334
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	2 cut(s)	106, 330
Fnu4HI	GCNGC	2 cut(s)	118, 355
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	118, 355
FspBI	CTAG	3 cut(s)	17, 164, 243
GluI	GCNGC	2 cut(s)	118, 355
Hin1II	CATG	2 cut(s)	110, 334
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	38, 170, 246
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	35, 216, 223, 251
Hpy188III	TCNNGA	5 cut(s)	42, 164, 275, 476, 536
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	34, 301, 581
HpyCH4III	ACNGT	2 cut(s)	304, 595
HpyCH4V	TGCA	8 cut(s)	86, 106, 117, 207, 357, 445, 521, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 413
HpyF3I	CTNAG	1 cut(s)	604
Hsp92II	CATG	2 cut(s)	110, 334
Kzo9I	GATC	3 cut(s)	391, 472, 541
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	37, 288, 309, 343, 387, 396, 461
Lsp1109I	GCAGC	2 cut(s)	129, 341
LweI	GCATC	3 cut(s)	454, 498, 570
MaeI	CTAG	3 cut(s)	17, 164, 243
MaeIII	GTNAC	3 cut(s)	137, 298, 571
MalI	GATC	3 cut(s)	393, 474, 543
MboI	GATC	3 cut(s)	391, 472, 541
MboII	GAAGA	3 cut(s)	22, 152, 401
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	321, 480
MnlI	CCTC	8 cut(s)	38, 83, 103, 159, 245, 532, 621, 634
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	526
MspA1I	CMGCKG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	188, 413
NdeII	GATC	3 cut(s)	391, 472, 541
NlaIII	CATG	2 cut(s)	110, 334
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	3 cut(s)	137, 298, 571
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	170, 246
PkrI	GCNGC	2 cut(s)	119, 356
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	543
PstI	CTGCAG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	526
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	118, 355
Sau3AI	GATC	3 cut(s)	391, 472, 541
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	26, 213, 241, 265, 312, 326, 388, 559
SfaNI	GCATC	3 cut(s)	454, 498, 570
SfcI	CTRYAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	526
Sse9I	AATT	1 cut(s)	69
SspMI	CTAG	3 cut(s)	17, 164, 243
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	304, 595
TaqI	TCGA	3 cut(s)	232, 492, 585
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	170, 246
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	309, 612
TseFI	GTSAC	3 cut(s)	137, 298, 571
TseI	GCWGC	2 cut(s)	117, 354
Tsp45I	GTSAC	3 cut(s)	137, 298, 571
TspRI	CASTG	2 cut(s)	309, 612
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	3 cut(s)	17, 164, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.