Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009522

Physical Location & Seq

Genomic Coordinates Reverse (-)

18774805 .. 18777030

Gene Structure 2226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAAGGAATCATTGTGAGAAGAGTTATACCATCTGATAACAGTTGTCTCTTCAATGCAATCGGTTATGTCATGGACAAGGACAAAAACAAAGCTCCTGAGCTCAGACAGGTGATAGCAGCAGCAGTTGCAAGCAACAAGGAGAAATATAATGAAGCATTTCTAGGGAAGCTCAATGAAGAATATTGTGCTTGGATTCTCAATCCAGACAAGTGGGGAGGTGCGATTGAGCTTTCGATATTAGCAGATTATTATGGTCGAGAAATTGCAGCTTACGACATTCAAACTAGTCGATGTGACTTGTATGGACAGACGAGAAACTACGACGAAAGAGTTATGCTGATCTATGACGGTCTTCATTACGATGCTCTTGCTCTGTCTCCATTTGAAGGGGCCGAGGAAGATTTTGATATGACTATATATCCAGTTGGTAAAGATAGATCCATAGGATCAATTGAAGGGCTTGCTTTGAATCTAGTGAAGGACCAACAAAGGAAAAGGAGTTACACAGATACTGCAAACTTCACTCTACGTTGCGGTGTTTGCCAAATTGGAGTTATTGGACAAAAGGAAGCTGTGGAACATGCTCAAGCAACTGGTCATGTTAATTTTCAAGAATACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

OTU

Protein Analysis

208

Amino Acids

23.43

Weight (kDa)

4.98

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	11 - 112	1.3e-09	OTU-like cysteine protease
zf-C2H2_OTU1_C	PF24560	173 - 207	2.9e-22	Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50670 AT1G50670 AT1G50670
fragaria_vesca	FvH4_3g22670 FvH4_3g22670
malus_domestica	MD11G1218600.v1.1
prunus_persica	Prupe.4G212700_v2.0.a1 Prupe.4G212700_v2.0.a1
pyrus_communis	pycom03g15250
rosa_chinensis	RchiOBHm_Chr5g0039431
rosa_laevigata	RLG00000033914
rosa_multiflora	Rmu_ssc0000400.1_g000104
rosa_roxburghii	Rroxscaffold_1G00040570 Rroxscaffold_1G00041780
rosa_rugosa	Rorug05G0179100 Rorug05G0179100 Rorug05G0179100
rosa_samantha	Rh5AG265800 Rh5BG270400 Rh5CG303400 Rh5DG278400
rosa_wichuraiana	Rw5G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	435, 457
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	6 cut(s)	55, 284, 389, 458, 472, 614
AhlI	ACTAGT	1 cut(s)	287
AluBI	AGCT	6 cut(s)	95, 103, 172, 232, 272, 575
AluI	AGCT	6 cut(s)	95, 103, 172, 232, 272, 575
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	53, 384
AlwI	GGATC	2 cut(s)	435, 457
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	3 cut(s)	119, 122, 269
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	393, 484
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	131, 134, 281
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BcoDI	GTCTC	2 cut(s)	53, 384
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	3 cut(s)	164, 288, 476
BisI	GCNGC	3 cut(s)	120, 123, 270
BlsI	GCNGC	3 cut(s)	121, 124, 271
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	393, 484
BmiI	GGNNCC	1 cut(s)	394
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	425, 601
BseDI	CCNNGG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	90, 118
BseNI	ACTGG	2 cut(s)	425, 601
BseXI	GCAGC	3 cut(s)	131, 134, 281
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	53, 384
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	342, 440, 449
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	91, 117
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	435, 457
BsrI	ACTGG	2 cut(s)	425, 601
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	3 cut(s)	342, 440, 449
Bst4CI	ACNGT	2 cut(s)	44, 353
Bst6I	CTCTTC	2 cut(s)	16, 56
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	133, 465
BstDEI	CTNAG	2 cut(s)	99, 104
BstKTI	GATC	3 cut(s)	345, 443, 452
BstMAI	GTCTC	2 cut(s)	53, 384
BstMBI	GATC	3 cut(s)	342, 440, 449
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 543
BstNSI	RCATGY	1 cut(s)	587
BstV1I	GCAGC	3 cut(s)	131, 134, 281
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	440
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	133, 465
CaiI	CAGNNNCTG	1 cut(s)	515
Cfr13I	GGNCC	2 cut(s)	393, 484
CviAII	CATG	3 cut(s)	73, 584, 602
CviJI	RGCY	8 cut(s)	95, 103, 172, 232, 272, 395, 463, 575
CviKI_1	RGCY	8 cut(s)	95, 103, 172, 232, 272, 395, 463, 575
DdeI	CTNAG	2 cut(s)	99, 104
DpnI	GATC	3 cut(s)	344, 442, 451
DpnII	GATC	3 cut(s)	342, 440, 449
Eam1104I	CTCTTC	2 cut(s)	16, 56
EarI	CTCTTC	2 cut(s)	16, 56
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	3 cut(s)	76, 587, 605
FatI	CATG	3 cut(s)	72, 583, 601
Fnu4HI	GCNGC	3 cut(s)	120, 123, 270
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	120, 123, 270
FspBI	CTAG	3 cut(s)	164, 288, 476
GluI	GCNGC	3 cut(s)	120, 123, 270
HaeIII	GGCC	1 cut(s)	395
Hin1II	CATG	3 cut(s)	76, 587, 605
HinfI	GANTC	3 cut(s)	9, 196, 472
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	37, 107
Hpy188III	TCNNGA	4 cut(s)	98, 206, 260, 614
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	3 cut(s)	383, 452, 475
HpyCH4III	ACNGT	2 cut(s)	44, 353
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	4 cut(s)	59, 131, 269, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 543
HpyF3I	CTNAG	2 cut(s)	99, 104
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	76, 587, 605
Kzo9I	GATC	3 cut(s)	342, 440, 449
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	95, 111, 219, 438, 582
Lsp1109I	GCAGC	3 cut(s)	131, 134, 281
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	3 cut(s)	164, 288, 476
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	2 cut(s)	296, 503
MalI	GATC	3 cut(s)	344, 442, 451
MboI	GATC	3 cut(s)	342, 440, 449
MboII	GAAGA	5 cut(s)	33, 43, 191, 347, 413
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	4 cut(s)	264, 453, 549, 607
MnlI	CCTC	2 cut(s)	212, 391
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	128, 543
NdeII	GATC	3 cut(s)	342, 440, 449
NlaIII	CATG	3 cut(s)	76, 587, 605
NlaIV	GGNNCC	1 cut(s)	394
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	9, 196, 472
PkrI	GCNGC	3 cut(s)	121, 124, 271
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	393, 484
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	3 cut(s)	120, 123, 270
Sau3AI	GATC	3 cut(s)	342, 440, 449
Sau96I	GGNCC	2 cut(s)	393, 484
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	9 cut(s)	97, 105, 114, 174, 223, 234, 274, 535, 577
SfaNI	GCATC	1 cut(s)	355
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	4 cut(s)	264, 453, 549, 607
SsiI	CCGC	1 cut(s)	537
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	3 cut(s)	164, 288, 476
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	44, 353
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	3 cut(s)	236, 259, 292
TasI	AATT	4 cut(s)	264, 453, 549, 607
TfiI	GAWTC	3 cut(s)	9, 196, 472
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	3 cut(s)	119, 122, 269
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	168, 192, 347
VpaK11BI	GGWCC	1 cut(s)	484
XceI	RCATGY	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	3 cut(s)	164, 288, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.