Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000400.1

Orthogroup ID

OG0009522

Physical Location & Seq

Genomic Coordinates Forward (+)

394808 .. 396343

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000400.1_g000104.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggaaggtacagtctttagaagagttattccctcagacaatagttgcctcttcaatgcagttgggtatgttatggaccatgacaagcaaaaagcttctgaattgagacaggttatagccgcaacggtggcaagtgatccaactaaatattctgaagcaattctgggtaaaccaaatgaagagtattgtgcttggattctcaacccagagaagtggggaggtgctattgagctttcaatattagcagattattatggacgtgaaattgcagcatatgatatccagactacaagatgcgatttgtatggtcaggagaaaaactattctgaaagggttatgctgatctatgatgggcttcactacgatgctttagctatgtctccatttgaagaagccccggaggagtttgatcagactatatttgcagttaagaacaagaccattgggccagtggagggcatcactcttaatcttgtgaaagagcaacaacggtataactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

OTU

Protein Analysis

166

Amino Acids

18.83

Weight (kDa)

4.66

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50670 AT1G50670 AT1G50670
fragaria_vesca	FvH4_3g22670 FvH4_3g22670
malus_domestica	MD11G1218600.v1.1
prunus_persica	Prupe.4G212700_v2.0.a1 Prupe.4G212700_v2.0.a1
pyrus_communis	pycom03g15250
rosa_chinensis	RchiOBHm_Chr5g0039431
rosa_laevigata	RLG00000033914
rosa_multiflora	Rmu_ssc0000400.1_g000104
rosa_roxburghii	Rroxscaffold_1G00040570 Rroxscaffold_1G00041780
rosa_rugosa	Rorug05G0179100 Rorug05G0179100 Rorug05G0179100
rosa_samantha	Rh5AG265800 Rh5BG270400 Rh5CG303400 Rh5DG278400
rosa_wichuraiana	Rw5G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	3 cut(s)	55, 237, 389
AjiI	CACGTC	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	3 cut(s)	95, 232, 374
AluI	AGCT	3 cut(s)	95, 232, 374
Alw26I	GTCTC	2 cut(s)	100, 384
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	76, 446
AsuC2I	CCSGG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	1 cut(s)	344
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	100, 384
BisI	GCNGC	2 cut(s)	120, 270
BlsI	GCNGC	2 cut(s)	121, 271
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	76, 446
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	3 cut(s)	284, 355, 468
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	281
BshFI	GGCC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	100, 384
BsnI	GGCC	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	136, 342, 409
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	1 cut(s)	47
BspPI	GGATC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	3 cut(s)	136, 342, 409
Bst4CI	ACNGT	3 cut(s)	13, 127, 492
Bst6I	CTCTTC	3 cut(s)	16, 56, 174
BstDEI	CTNAG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	139, 345, 412
BstMAI	GTCTC	2 cut(s)	100, 384
BstMBI	GATC	3 cut(s)	136, 342, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	281
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	76, 446
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	7 cut(s)	95, 119, 232, 355, 374, 395, 448
CviKI_1	RGCY	7 cut(s)	95, 119, 232, 355, 374, 395, 448
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	3 cut(s)	138, 344, 411
DpnII	GATC	3 cut(s)	136, 342, 409
Eam1104I	CTCTTC	3 cut(s)	16, 56, 174
EarI	CTCTTC	3 cut(s)	16, 56, 174
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	280
FaeI	CATG	1 cut(s)	83
FatI	CATG	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	120, 270
Fsp4HI	GCNGC	2 cut(s)	120, 270
GluI	GCNGC	2 cut(s)	120, 270
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	1 cut(s)	398
Hin1II	CATG	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	5 cut(s)	37, 100, 154, 328, 414
Hpy188III	TCNNGA	2 cut(s)	283, 311
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4III	ACNGT	3 cut(s)	13, 127, 492
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	59, 269, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	136, 342, 409
LpnPI	CCDG	7 cut(s)	95, 149, 219, 296, 296, 411, 462
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	3 cut(s)	284, 355, 468
MaeII	ACGT	1 cut(s)	259
MalI	GATC	3 cut(s)	138, 344, 411
MboI	GATC	3 cut(s)	136, 342, 409
MboII	GAAGA	4 cut(s)	33, 43, 191, 401
MluCI	AATT	3 cut(s)	101, 159, 264
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	5 cut(s)	43, 59, 212, 394, 448
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	2 cut(s)	429, 468
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	398
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	3 cut(s)	136, 342, 409
NlaIII	CATG	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	121, 271
PspPI	GGNCC	2 cut(s)	76, 446
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	429, 468
SatI	GCNGC	2 cut(s)	120, 270
Sau3AI	GATC	3 cut(s)	136, 342, 409
Sau96I	GGNCC	2 cut(s)	76, 446
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	7 cut(s)	10, 97, 114, 223, 234, 262, 376
SfaNI	GCATC	3 cut(s)	284, 355, 468
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	101, 159, 264
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	2 cut(s)	149, 240
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	3 cut(s)	13, 127, 492
TaiI	ACGT	1 cut(s)	262
TasI	AATT	3 cut(s)	101, 159, 264
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	429, 468
Tru9I	TTAA	2 cut(s)	429, 468
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.