Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009522

Physical Location & Seq

Genomic Coordinates Forward (+)

31873461 .. 31877533

Gene Structure 4073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1218600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAAGGTATCGTAGTAAGAAGGGTTATTCCCTCAGACAATAGTTGCCTCTTCAATGCGGTCGGGTATGTGATGGATCATGACCAGAAAAAAGCTCCTGAATTGAGACAGGTTATAGCTGCAACGGTAGCAAGTGATCCAACTAAGTATTCTGAAGCATTTCTTGGTAAATCGAACGAAGAGTATTGTGCTTGGATTCTTGACTCAGAGAAGTGGGGAGGTGCCATAGAGCTATCTATATTAGCAGATTATTATGGACGTGAAATCGCAGCGTATGATATCCAGACTACACGTTGTGATTTGTATGGTCAGGAGAAGAAGTATTCAGAAAGGGTTATGTTGATCTATGATGGACTTCATTACGATGCTTTAGCTATGTCTCCCTTCGAGGGAGCTCCAGAGGAGTTTGATCAGACAATATTTGCAGTCCATAACAGTTCCATTGGGCCAGTTGAGGGGCTCGCTCTTAACCTTGTCAAAGAGCAACAAAGTAAGAGGAGATACACGGACACTGCCAACTTCACTTTGCGCTGTGGGGTGTGCCAACTTGGACTGGTCGGCCAGAAGGAGGCTGTGGAGCATGCACGGGCGACAGGGCATGTCAACTTTCAAGAATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

OTU

Protein Analysis

208

Amino Acids

23.25

Weight (kDa)

5.07

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	11 - 113	6.8e-09	OTU-like cysteine protease
zf-C2H2_OTU1_C	PF24560	172 - 206	3.4e-22	Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50670 AT1G50670 AT1G50670
fragaria_vesca	FvH4_3g22670 FvH4_3g22670
malus_domestica	MD11G1218600.v1.1
prunus_persica	Prupe.4G212700_v2.0.a1 Prupe.4G212700_v2.0.a1
pyrus_communis	pycom03g15250
rosa_chinensis	RchiOBHm_Chr5g0039431
rosa_laevigata	RLG00000033914
rosa_multiflora	Rmu_ssc0000400.1_g000104
rosa_roxburghii	Rroxscaffold_1G00040570 Rroxscaffold_1G00041780
rosa_rugosa	Rorug05G0179100 Rorug05G0179100 Rorug05G0179100
rosa_samantha	Rh5AG265800 Rh5BG270400 Rh5CG303400 Rh5DG278400
rosa_wichuraiana	Rw5G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	2 cut(s)	84, 131
AcoI	YGGCCR	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	389, 455, 568
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	55, 611
AjiI	CACGTC	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	4 cut(s)	133, 147, 165, 179
AluBI	AGCT	5 cut(s)	95, 119, 232, 374, 395
AluI	AGCT	5 cut(s)	95, 119, 232, 374, 395
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	100, 384
AlwI	GGATC	2 cut(s)	84, 131
AoxI	GGCC	2 cut(s)	446, 559
ApeKI	GCWGC	2 cut(s)	119, 269
Asp700I	GAANNNNTTC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	397, 462
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	106, 281
BccI	CCATC	2 cut(s)	67, 344
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	100, 384
BisI	GCNGC	2 cut(s)	120, 270
BlsI	GCNGC	2 cut(s)	121, 271
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	3 cut(s)	389, 455, 568
Bse1I	ACTGG	2 cut(s)	449, 558
BseLI	CCNNNNNNNGG	3 cut(s)	389, 455, 568
BseMII	CTCAG	2 cut(s)	48, 219
BseNI	ACTGG	2 cut(s)	449, 558
BseRI	GAGGAG	2 cut(s)	416, 511
BseXI	GCAGC	2 cut(s)	106, 281
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	448, 561
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	389, 455, 568
BsmAI	GTCTC	2 cut(s)	100, 384
BsnI	GGCC	2 cut(s)	448, 561
Bsp1286I	GDGCHC	2 cut(s)	397, 462
Bsp143I	GATC	4 cut(s)	76, 136, 342, 409
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	448, 561
BspCNI	CTCAG	2 cut(s)	47, 218
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	84, 131
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	449, 558
BssMI	GATC	4 cut(s)	76, 136, 342, 409
Bst4CI	ACNGT	2 cut(s)	127, 437
Bst6I	CTCTTC	2 cut(s)	56, 174
BstC8I	GCNNGC	2 cut(s)	462, 582
BstDEI	CTNAG	3 cut(s)	34, 144, 205
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	4 cut(s)	79, 139, 345, 412
BstMAI	GTCTC	2 cut(s)	100, 384
BstMBI	GATC	4 cut(s)	76, 136, 342, 409
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	2 cut(s)	584, 602
BstV1I	GCAGC	2 cut(s)	106, 281
BsuRI	GGCC	2 cut(s)	448, 561
BtrI	CACGTC	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	462, 582
CciI	TCATGA	1 cut(s)	79
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	446
CviAII	CATG	3 cut(s)	80, 581, 599
CviJI	RGCY	9 cut(s)	95, 119, 232, 374, 395, 448, 460, 561, 572
CviKI_1	RGCY	9 cut(s)	95, 119, 232, 374, 395, 448, 460, 561, 572
DdeI	CTNAG	3 cut(s)	34, 144, 205
DpnI	GATC	4 cut(s)	78, 138, 344, 411
DpnII	GATC	4 cut(s)	76, 136, 342, 409
DraIII	CACNNNGTG	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	2 cut(s)	56, 174
EarI	CTCTTC	2 cut(s)	56, 174
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	2 cut(s)	397, 462
Eco32I	GATATC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	280
EcoT38I	GRGCYC	2 cut(s)	397, 462
FaeI	CATG	3 cut(s)	83, 584, 602
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	3 cut(s)	79, 580, 598
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	120, 270
FriOI	GRGCYC	2 cut(s)	397, 462
Fsp4HI	GCNGC	2 cut(s)	120, 270
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	120, 270
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	448, 561
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	3 cut(s)	83, 584, 602
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	196, 203
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	5 cut(s)	37, 154, 208, 328, 414
Hpy188III	TCNNGA	7 cut(s)	80, 98, 200, 283, 311, 398, 611
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	3 cut(s)	15, 394, 559
HpyCH4III	ACNGT	2 cut(s)	127, 437
HpyCH4IV	ACGT	2 cut(s)	259, 292
HpyCH4V	TGCA	3 cut(s)	122, 425, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	3 cut(s)	34, 144, 205
HpySE526I	ACGT	2 cut(s)	259, 292
Hsp92II	CATG	3 cut(s)	83, 584, 602
HspAI	GCGC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	76, 136, 342, 409
LmnI	GCTCC	4 cut(s)	100, 392, 400, 577
Lsp1109I	GCAGC	2 cut(s)	106, 281
LweI	GCATC	1 cut(s)	355
MaeII	ACGT	2 cut(s)	259, 292
MalI	GATC	4 cut(s)	78, 138, 344, 411
MboI	GATC	4 cut(s)	76, 136, 342, 409
MboII	GAAGA	3 cut(s)	43, 191, 328
MhlI	GDGCHC	2 cut(s)	397, 462
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	43, 59, 212, 382, 394, 448, 489, 562
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	4 cut(s)	76, 136, 342, 409
NlaIII	CATG	3 cut(s)	83, 584, 602
NlaIV	GGNNCC	1 cut(s)	223
NspI	RCATGY	2 cut(s)	584, 602
PaeI	GCATGC	1 cut(s)	584
PagI	TCATGA	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	121, 271
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	2 cut(s)	120, 270
Sau3AI	GATC	4 cut(s)	76, 136, 342, 409
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	397, 462
SfaNI	GCATC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	363
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	127, 437
TaiI	ACGT	2 cut(s)	262, 295
TaqI	TCGA	2 cut(s)	173, 387
TasI	AATT	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	2 cut(s)	119, 269
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	517
XceI	RCATGY	2 cut(s)	584, 602
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.