Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009522

Physical Location & Seq

Genomic Coordinates Forward (+)

16561080 .. 16563041

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGAGTATTGTGCTTGGATTCTTGACTCAGAGAAGTGGGGAGGTTTGGGCCATAGAGCTGTCTATATTAGCAGATTATTACGGACGGGAAATTGCAGCATATGATATCCAGACTACACGTTGTGATTTGTATGGTCAGGAGAAGAAGTATTCAGAAAGGGTTATGTTGATCTATGACGGACTTCATTACGATGCTTTAGCTATGTCTCCCTTCGAGGGAGCTCCAGAGGAGTTTGATCAGACGATATTTGCAGTCCAGAACGGTTCCATTGGGCCTGTTGAGGGGCTCGCCCTTAACCTAGTGAAAGAGCAACAAAGTAAAAGGCGATACACAGACACTGCCAACTTCACTTTGCGCTGTGGAGTGTGCCAACTCGGACTAGTCGGCCAGAAGGAGGCTGTAGAGCATGCACGGGCGACAGGGCATGTCAACTTTCAAGAATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

OTU

Protein Analysis

151

Amino Acids

16.92

Weight (kDa)

5.2

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50670 AT1G50670 AT1G50670
fragaria_vesca	FvH4_3g22670 FvH4_3g22670
malus_domestica	MD11G1218600.v1.1
prunus_persica	Prupe.4G212700_v2.0.a1 Prupe.4G212700_v2.0.a1
pyrus_communis	pycom03g15250
rosa_chinensis	RchiOBHm_Chr5g0039431
rosa_laevigata	RLG00000033914
rosa_multiflora	Rmu_ssc0000400.1_g000104
rosa_roxburghii	Rroxscaffold_1G00040570 Rroxscaffold_1G00041780
rosa_rugosa	Rorug05G0179100 Rorug05G0179100 Rorug05G0179100
rosa_samantha	Rh5AG265800 Rh5BG270400 Rh5CG303400 Rh5DG278400
rosa_wichuraiana	Rw5G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	388
AdeI	CACNNNGTG	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	218, 284, 397
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	440
AhlI	ACTAGT	1 cut(s)	382
AluBI	AGCT	3 cut(s)	61, 203, 224
AluI	AGCT	3 cut(s)	61, 203, 224
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	213
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	3 cut(s)	51, 275, 388
ApeKI	GCWGC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	51, 275
BanII	GRGCYC	2 cut(s)	226, 291
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	110
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	382
BfaI	CTAG	2 cut(s)	302, 383
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	51, 275
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 284, 397
BseLI	CCNNNNNNNGG	3 cut(s)	218, 284, 397
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	3 cut(s)	53, 277, 390
BsiHKAI	GWGCWC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	218, 284, 397
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	3 cut(s)	53, 277, 390
Bsp1286I	GDGCHC	2 cut(s)	226, 291
Bsp143I	GATC	2 cut(s)	171, 238
BspANI	GGCC	3 cut(s)	53, 277, 390
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	268
BssMI	GATC	2 cut(s)	171, 238
Bst4CI	ACNGT	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	291, 411
BstDEI	CTNAG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	2 cut(s)	174, 241
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	171, 238
BstNSI	RCATGY	2 cut(s)	413, 431
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	53, 277, 390
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	291, 411
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	51, 275
CviAII	CATG	2 cut(s)	410, 428
CviJI	RGCY	8 cut(s)	53, 61, 203, 224, 277, 289, 390, 401
CviKI_1	RGCY	8 cut(s)	53, 61, 203, 224, 277, 289, 390, 401
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	173, 240
DpnII	GATC	2 cut(s)	171, 238
DraIII	CACNNNGTG	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	388
Ecl136II	GAGCTC	1 cut(s)	224
Eco24I	GRGCYC	2 cut(s)	226, 291
Eco32I	GATATC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	109
EcoT38I	GRGCYC	2 cut(s)	226, 291
FaeI	CATG	2 cut(s)	413, 431
FatI	CATG	2 cut(s)	409, 427
FauNDI	CATATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	2 cut(s)	226, 291
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	302, 383
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	53, 277, 390
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	413, 431
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	21, 28
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	4 cut(s)	33, 157, 243, 380
Hpy188III	TCNNGA	6 cut(s)	25, 112, 140, 227, 259, 440
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	2 cut(s)	223, 388
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	98, 254, 413
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	2 cut(s)	413, 431
HspAI	GCGC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	171, 238
LmnI	GCTCC	2 cut(s)	221, 229
LpnPI	CCDG	7 cut(s)	125, 125, 240, 272, 291, 404, 408
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	302, 383
MaeII	ACGT	1 cut(s)	121
MalI	GATC	2 cut(s)	173, 240
MboI	GATC	2 cut(s)	171, 238
MboII	GAAGA	2 cut(s)	16, 157
MhlI	GDGCHC	2 cut(s)	226, 291
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	5 cut(s)	37, 211, 223, 277, 391
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	2 cut(s)	171, 238
NlaIII	CATG	2 cut(s)	413, 431
NlaIV	GGNNCC	1 cut(s)	268
NspI	RCATGY	2 cut(s)	413, 431
PaeI	GCATGC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	51, 275
PstNI	CAGNNNCTG	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	171, 238
Sau96I	GGNCC	2 cut(s)	51, 275
SchI	GAGTC	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	226, 291
SetI	ASST	6 cut(s)	48, 63, 124, 205, 226, 303
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	382
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	1 cut(s)	93
SspMI	CTAG	2 cut(s)	302, 383
SstI	GAGCTC	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	17, 176
TspGWI	ACGGA	2 cut(s)	99, 195
TspRI	CASTG	1 cut(s)	346
XceI	RCATGY	2 cut(s)	413, 431
XspI	CTAG	2 cut(s)	302, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.