AT1G51080

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18929744 .. 18930811
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51080.1

Sequence Viewer

Length: 858 bp
ATGAGTTTCTCGGTGGTCTTGTTCCACAGTCCTCACTCTGCTGCAGTAACAACAAAAACCATCTTCAGAATCTCATCATCATCATCTTTCAGACCAAGAAGAAATCTTTCTTCATCTAATGGTATCTTCTCCACCAATCAGTCTAAACCCTTAATCAAAAAACTTCAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTCGGCAAACACAAGGGCAAAATGCTTGGTACTTTGCCTTCTTCTTATCTTAAATGGGTCTCAAAGAATCTTCGTGCAGGAGTTTTTGAGTATTGGGCAAAGCTTGCTGATGAAGTGCTCGAAGACGATGTTTATAAAGATAGAACTGAGTGGGAATTTGCAGAGAAAATCCTCCATGGAAGTGATGAGAGCATGAGAGCTTTAACTTCTGTAAGGAAGAGTAGAGAAGAGGTAAACTCTGTTTCGATGTTGTTGGAGATTAGTGAGAGATTTGGTTGGGATAATGAAGATAAGATTGGTTGGAGCAAAATCAATTTTGAGCTTTTAGGGACAAGCAAAGGTGGTCGGATTCCTAGGTTAAGGAAGGCGAACGAAGAAGAAGAAGAGAGAGGAGAAATGGTAAGAAGAAGAGAGATTAAGAAGAAGGAAGAAGAGGAAGATGAGAATGGATGGAGGAGAAAACAGAGGAGAGAAAGGATGAGACAGAGTCTTGGGAGAGATGATGGCAAGACAGTGAATAGAAGTGAGCAGAAGGGTGTTTTGGGAAAGCTAGAAGATGTAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCTTTTCCTGGTCGTGAGAGTCTGTTGAAGAAAGTCATGAACAAGAGAAGGTCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

285

Amino Acids

33.09

Weight (kDa)

9.77

Isoelectric Point (pI)

59.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51080
fragaria_vesca FvH4_6g36940
malus_domestica MD09G1165300.v1.1
prunus_persica Prupe.3G023000_v2.0.a1
pyrus_communis pycom04g06160
rosa_wichuraiana Rw2G038390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AciI CCGC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 49
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 806
AgsI TTSAA 3 cut(s) 167, 794, 826
AjnI CCWGG 1 cut(s) 805
AjuI GAANNNNNNNTTGG 4 cut(s) 486, 518, 731, 763
AluBI AGCT 4 cut(s) 310, 407, 529, 757
AluI AGCT 4 cut(s) 310, 407, 529, 757
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 3 cut(s) 186, 271, 682
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 106
AspA2I CCTAGG 1 cut(s) 560
AvrII CCTAGG 1 cut(s) 560
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 28
BccI CCATC 3 cut(s) 68, 651, 704
BciT130I CCWGG 1 cut(s) 807
BcoDI GTCTC 3 cut(s) 186, 271, 682
BfaI CTAG 3 cut(s) 182, 561, 758
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 2 cut(s) 42, 186
BlnI CCTAGG 1 cut(s) 560
BlsI GCNGC 2 cut(s) 43, 187
Bme1390I CCNGG 1 cut(s) 807
BmrFI CCNGG 1 cut(s) 807
BpiI GAAGAC 1 cut(s) 336
BplI GAGNNNNNCTC 3 cut(s) 428, 460, 835
BpuEI CTTGAG 1 cut(s) 800
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 382, 560
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 806
BseBI CCWGG 1 cut(s) 807
BseDI CCNNGG 2 cut(s) 382, 560
BseGI GGATG 2 cut(s) 662, 690
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMII CTCAG 1 cut(s) 345
BseRI GAGGAG 3 cut(s) 612, 676, 688
BseXI GCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 327
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 3 cut(s) 186, 271, 682
BsmFI GGGAC 1 cut(s) 550
Bso31I GGTCTC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 834
BspMAI CTGCAG 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 382, 560
BssT1I CCWWGG 2 cut(s) 382, 560
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 2 cut(s) 29, 721
Bst6I CTCTTC 5 cut(s) 419, 429, 585, 610, 633
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 2 cut(s) 662, 690
BstMAI GTCTC 3 cut(s) 186, 271, 682
BstMWI GCNNNNNNNGC 2 cut(s) 311, 781
BstNI CCWGG 1 cut(s) 807
BstSCI CCNGG 1 cut(s) 805
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 382
BtsCI GGATG 2 cut(s) 662, 690
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 834
Csp6I GTAC 1 cut(s) 237
CviAII CATG 3 cut(s) 383, 400, 835
CviJI RGCY 6 cut(s) 185, 310, 407, 529, 757, 784
CviKI_1 RGCY 6 cut(s) 185, 310, 407, 529, 757, 784
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 354
Eam1104I CTCTTC 5 cut(s) 419, 429, 585, 610, 633
EarI CTCTTC 5 cut(s) 419, 429, 585, 610, 633
Eco130I CCWWGG 2 cut(s) 382, 560
Eco31I GGTCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 805
EcoT14I CCWWGG 2 cut(s) 382, 560
ErhI CCWWGG 2 cut(s) 382, 560
FaeI CATG 3 cut(s) 386, 403, 838
FaiI YATR 5 cut(s) 203, 342, 384, 401, 836
FaqI GGGAC 1 cut(s) 550
FatI CATG 3 cut(s) 382, 399, 834
Fnu4HI GCNGC 2 cut(s) 42, 186
FokI GGATG 2 cut(s) 669, 697
Fsp4HI GCNGC 2 cut(s) 42, 186
FspBI CTAG 3 cut(s) 182, 561, 758
GluI GCNGC 2 cut(s) 42, 186
Hin1II CATG 3 cut(s) 386, 403, 838
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 6 cut(s) 69, 274, 556, 694, 790, 817
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 68, 92, 555
Hpy188III TCNNGA 2 cut(s) 812, 835
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 5 cut(s) 255, 565, 625, 733, 840
HpyCH4III ACNGT 2 cut(s) 29, 721
HpyCH4V TGCA 3 cut(s) 44, 284, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 781
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 3 cut(s) 386, 403, 838
LmnI GCTCC 1 cut(s) 510
LpnPI CCDG 4 cut(s) 202, 270, 792, 819
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 3 cut(s) 182, 561, 758
MaeIII GTNAC 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 2 cut(s) 362, 520
MlyI GAGTC 2 cut(s) 703, 826
MmeI TCCRAC 3 cut(s) 441, 488, 533
MnlI CCTC 7 cut(s) 42, 389, 430, 590, 634, 654, 666
MroXI GAANNNNTTC 1 cut(s) 106
MseI TTAA 5 cut(s) 152, 258, 410, 566, 624
MslI CAYNNNNRTG 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 807
MwoI GCNNNNNNNGC 2 cut(s) 311, 781
NcoI CCATGG 1 cut(s) 382
NlaIII CATG 3 cut(s) 386, 403, 838
PagI TCATGA 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 4 cut(s) 69, 274, 556, 790
PflFI GACNNNGTC 1 cut(s) 693
PkrI GCNGC 2 cut(s) 43, 187
PleI GAGTC 2 cut(s) 702, 825
PpsI GAGTC 2 cut(s) 702, 825
PsiI TTATAA 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 805
PspGI CCWGG 1 cut(s) 805
PstI CTGCAG 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 693
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 5 cut(s) 152, 258, 410, 566, 624
SatI GCNGC 2 cut(s) 42, 186
SchI GAGTC 2 cut(s) 703, 826
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 1 cut(s) 327
SetI ASST 8 cut(s) 312, 409, 441, 531, 550, 566, 759, 851
SfcI CTRYAG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
Sse9I AATT 2 cut(s) 362, 520
SsiI CCGC 1 cut(s) 186
SspMI CTAG 3 cut(s) 182, 561, 758
StyD4I CCNGG 1 cut(s) 805
StyI CCWWGG 2 cut(s) 382, 560
TaaI ACNGT 2 cut(s) 29, 721
TaqI TCGA 3 cut(s) 174, 327, 452
TasI AATT 2 cut(s) 362, 520
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 4 cut(s) 69, 274, 556, 790
Tru1I TTAA 5 cut(s) 152, 258, 410, 566, 624
Tru9I TTAA 5 cut(s) 152, 258, 410, 566, 624
TscAI CASTG 1 cut(s) 726
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 102, 333, 507, 851
TspRI CASTG 1 cut(s) 726
Tth111I GACNNNGTC 1 cut(s) 693
XapI RAATTY 1 cut(s) 362
XmaJI CCTAGG 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 3 cut(s) 182, 561, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.