pycom04g06160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0020158
Physical Location & Seq
Reverse (-)
6118908 .. 6119147
240 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g06160.1

Sequence Viewer

Length: 240 bp
ATGCTAGGTACCCTCCCTTCAACCTACCTCAAGTGGGTCTCCAAAAATCTCCGCGCTCACAACTTCGAGGACTGGGCAAAGCTCACCGACCAGGTCCTTGACAACGCCGTTTACCGAGACTGGATCGAGTGGGAGCTGGCGGAGAACGTCCTGAACGAAAATCGAAGGAAAACAGACCTAGCCTCTGACGTCATTTCGTCCACCAAGCTATGGTGGCTCCAAACCCATCAAGAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QSregVF_b

Protein Analysis

80

Amino Acids

9.43

Weight (kDa)

5.21

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51080
fragaria_vesca FvH4_6g36940
malus_domestica MD09G1165300.v1.1
prunus_persica Prupe.3G023000_v2.0.a1
pyrus_communis pycom04g06160
rosa_wichuraiana Rw2G038390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
Acc65I GGTACC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 210
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 52, 140
AclWI GGATC 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 34, 210
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 3 cut(s) 82, 136, 208
AluI AGCT 3 cut(s) 82, 136, 208
Alw26I GTCTC 2 cut(s) 43, 111
AlwI GGATC 1 cut(s) 131
Asp718I GGTACC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 8
BarI GAAGNNNNNNTAC 1 cut(s) 33
BccI CCATC 1 cut(s) 234
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 43, 111
BfaI CTAG 2 cut(s) 5, 179
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 10, 218
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 82
BmuI ACTGGG 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 210
Bse1I ACTGG 2 cut(s) 77, 125
BseBI CCWGG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 34, 210
BseNI ACTGG 2 cut(s) 77, 125
Bsh1236I CGCG 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 34, 210
BsmAI GTCTC 2 cut(s) 43, 111
Bso31I GGTCTC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 2 cut(s) 52, 140
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 10, 218
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 77, 125
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 138
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 2 cut(s) 43, 111
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 90
Csp6I GTAC 1 cut(s) 9
CviJI RGCY 5 cut(s) 82, 136, 182, 208, 217
CviKI_1 RGCY 5 cut(s) 82, 136, 182, 208, 217
CviQI GTAC 1 cut(s) 9
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 90
FaiI YATR 1 cut(s) 211
FspBI CTAG 2 cut(s) 5, 179
GlaI GCGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 189
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 112, 201
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 151, 230
Hpy8I GTNNAC 2 cut(s) 112, 201
HpyAV CCTTC 2 cut(s) 27, 159
HpyCH4IV ACGT 2 cut(s) 147, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpySE526I ACGT 2 cut(s) 147, 189
Hsp92I GRCGYC 1 cut(s) 189
HspAI GCGC 1 cut(s) 54
KpnI GGTACC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 133, 222
LpnPI CCDG 6 cut(s) 58, 77, 104, 106, 122, 164
MabI ACCWGGT 1 cut(s) 90
MaeI CTAG 2 cut(s) 5, 179
MaeII ACGT 2 cut(s) 147, 189
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MnlI CCTC 4 cut(s) 23, 38, 61, 193
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 1 cut(s) 123
NlaIV GGNNCC 2 cut(s) 10, 218
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 10, 218
PspPI GGNCC 1 cut(s) 94
PspPPI RGGWCCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 92
SexAI ACCWGGT 1 cut(s) 90
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SsiI CCGC 2 cut(s) 52, 140
SspMI CTAG 2 cut(s) 5, 179
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 2 cut(s) 150, 192
TaqI TCGA 3 cut(s) 66, 126, 163
Tth111I GACNNNGTC 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 94
XspI CTAG 2 cut(s) 5, 179
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.